Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.4e-221 772.7 403 100.0
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 5.0e-195 684.5 406 86.7
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 9.7e-191 670.2 404 85.9
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 2.0e-188 662.5 404 87.4
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 2.5e-186 655.6 406 84.2
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 7.9e-185 650.6 399 84.7
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 2.6e-183 645.6 404 82.7
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 2.8e-182 642.1 404 81.2
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 5.3e-181 637.9 405 81.2
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 7.7e-180 634.0 405 80.0
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 2.5e-178 629.0 404 79.0
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 3.2e-178 628.6 405 79.8
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 3.2e-178 628.6 405 79.8
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 3.2e-178 628.6 404 78.7
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 7.2e-178 627.5 404 80.7
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 3.0e-176 622.1 409 79.7
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 3.0e-176 622.1 404 79.7
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 4.0e-176 621.7 404 78.7
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 5.2e-176 621.3 409 79.7
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 6.7e-176 620.9 404 78.7
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 6.7e-176 620.9 404 78.7
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 2.0e-175 619.4 399 80.5
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 2.6e-175 619.0 419 76.8
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 2.8e-174 615.5 405 78.5
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 2.8e-174 615.5 407 77.9
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 3.7e-174 615.1 406 78.1
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 1.4e-173 613.2 404 77.2
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 1.4e-173 613.2 406 77.6
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 1.6e-172 609.8 407 77.6
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 1.6e-172 609.8 407 77.6
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 4.5e-172 608.2 405 78.8
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 5.9e-172 607.8 406 79.1
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 7.7e-172 607.4 406 77.1
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 2.9e-171 605.5 399 78.4
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 3.8e-171 605.1 409 76.8
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 3.8e-171 605.1 404 78.2
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 5.0e-171 604.7 405 78.0
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 6.5e-171 604.4 404 76.7
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.2e-170 602.1 409 76.0
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 4.2e-170 601.7 403 77.2
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 5.5e-170 601.3 409 75.8
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 7.2e-170 600.9 409 76.0
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 1.2e-169 600.1 406 77.6
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 1.6e-169 599.7 404 76.5
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.6e-169 599.7 409 75.8
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 2.7e-169 599.0 404 77.2
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 8.0e-169 597.4 403 76.9
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 4.0e-168 595.1 404 75.5
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 4.0e-168 595.1 404 75.7
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 1.2e-167 593.6 402 76.4
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 7.5e-167 590.9 409 74.8
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 9.8e-167 590.5 405 75.6
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 9.8e-167 590.5 404 75.5
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 1.7e-166 589.7 399 75.4
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 1.7e-166 589.7 405 76.0
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 2.2e-166 589.3 407 75.7
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 1.1e-165 587.0 409 75.3
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 1.1e-165 587.0 398 76.1
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 1.4e-165 586.6 402 75.1
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 3.1e-165 585.5 400 76.8
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 4.1e-165 585.1 404 75.0
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 5.4e-165 584.7 404 75.0
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 5.4e-165 584.7 453 70.2
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.6e-164 583.2 400 75.5
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 3.5e-164 582.0 450 68.7
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 7.7e-164 580.9 439 69.9
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 1.0e-163 580.5 443 71.8
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 2.2e-163 579.3 406 75.1
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 6.5e-163 577.8 404 73.3
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 4.2e-162 575.1 402 74.9
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 7.2e-162 574.3 402 73.9
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 1.2e-161 573.5 389 76.3
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 2.1e-161 572.8 409 73.8
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 1.4e-160 570.1 405 75.8
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 1.4e-160 570.1 402 74.9
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 3.0e-160 568.9 405 73.3
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 3.4e-159 565.5 412 72.6
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 3.4e-159 565.5 410 73.7
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 2.2e-158 562.8 400 74.2
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 2.8e-158 562.4 404 73.3
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 6.3e-158 561.2 404 73.3
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 2.4e-157 559.3 406 73.2
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 2.7e-156 555.8 402 71.4
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 7.7e-156 554.3 404 72.0
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 7.7e-156 554.3 407 74.2
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 1.0e-155 553.9 402 71.1
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 2.3e-155 552.7 400 74.0
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 1.9e-154 549.7 406 71.9
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 4.3e-154 548.5 402 70.9
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 7.3e-154 547.7 406 70.7
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 9.5e-154 547.4 402 70.6
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 1.6e-153 546.6 408 69.6
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 6.1e-153 544.7 402 71.1
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 6.1e-153 544.7 404 73.0
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 3.0e-152 542.3 406 70.9
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 4.0e-152 542.0 430 67.0
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 7.5e-151 537.7 407 70.8
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 9.8e-151 537.3 406 70.4
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 2.2e-150 536.2 404 68.6
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 2.9e-150 535.8 401 71.1
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 3.7e-150 535.4 406 70.0
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 3.7e-150 535.4 397 69.0
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 8.3e-150 534.3 407 70.3
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 8.3e-150 534.3 406 70.0
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 2.4e-149 532.7 404 69.3
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.6e-148 528.5 408 70.1
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.6e-148 528.5 414 69.8
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 4.6e-148 528.5 403 68.5
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 1.1e-146 523.9 408 67.4
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 3.3e-146 522.3 404 70.8
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 2.1e-145 519.6 397 66.5
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 3.6e-145 518.8 406 67.5
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 3.1e-144 515.8 401 69.6
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 5.2e-144 515.0 404 68.6
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 1.9e-141 506.5 416 67.5
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 1.7e-139 500.0 404 63.1
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 1.8e-136 490.0 399 64.2
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 1.3e-131 473.8 374 66.8
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 1.6e-129 466.8 294 82.0
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 3.4e-127 459.1 524 51.7
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 2.9e-126 456.1 332 73.8
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 2.4e-125 453.0 441 59.6
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 5.1e-123 445.3 337 69.7
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 1.6e-121 440.3 375 62.9
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 2.1e-116 423.3 435 56.1
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 6.6e-115 418.3 404 56.2
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 1.1e-106 391.0 406 57.4
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 2.6e-103 379.8 405 51.6
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 2.6e-103 379.8 405 51.6
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 1.9e-101 373.6 399 57.6
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 1.1e-98 364.4 398 52.0
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 5.7e-90 335.5 203 86.2
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 4.1e-88 329.3 406 46.3
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 1.4e-75 287.7 406 47.0
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 3.2e-69 266.5 358 47.2
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 2.4e-64 250.4 428 39.3
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 3.2e-61 240.0 299 48.2
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 2.2e-57 227.3 276 51.8
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.2e-55 221.5 149 78.5
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 8.0e-44 182.2 145 69.7
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 9.2e-32 142.1 102 71.6
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 3.0e-30 137.1 93 75.3
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 2.6e-26 124.0 73 89.0
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 3.4e-26 123.6 416 28.6
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 8.3e-25 119.0 87 65.5
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 3.2e-24 117.1 128 52.3
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 5.4e-24 116.3 187 43.9
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 1.9e-21 107.8 69 81.2
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 2.1e-20 104.4 84 69.0
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.9e-16 91.3 68 66.2
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 3.2e-16 90.5 440 25.7
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 1.6e-15 88.2 60 68.3
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 3.5e-15 87.0 380 25.8
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 3.6e-12 77.0 450 23.3
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 6.2e-12 76.3 62 69.4
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 5.2e-11 73.2 55 69.1
Rhsim03G0259700 Rhododendron simsii HOM05D004576 ORTHO05D005321 1.2e-07 62.0 41 73.2
C03p88580 Brassica napus HOM05D004576 ORTHO05D005321 7.8e-07 59.3 85 42.4


User provided reference genes

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