Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008619 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 7.4e-49 197.2 124 100.0
CSS0048777 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 2.1e-19 99.4 112 50.9
Rhsim02G0116500 Rhododendron simsii HOM05D007156 ORTHO05D003871 2.6e-17 92.4 113 47.8
Rhsim13G0163300 Rhododendron simsii HOM05D007156 ORTHO05D003871 6.3e-16 87.8 112 46.4
Dinv17859 Davidia involucrata HOM05D001601 ORTHO05D006936 5.9e-14 81.3 111 42.3
Nitab4.5_0005140g0010 Nicotiana tabacum HOM05D007156 ORTHO05D003871 1.3e-13 80.1 97 47.4
Sopen02g024570 Solanum pennellii HOM05D007156 ORTHO05D003871 6.8e-10 67.8 89 43.8
PGSC0003DMG400021719 Solanum tuberosum HOM05D001601 ORTHO05D006936 6.8e-10 67.8 89 43.8
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.2e-09 67.0 47 66.0
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 2.6e-09 65.9 47 68.1
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 3.4e-09 65.5 42 71.4
Solyc02g079800.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 3.4e-09 65.5 89 42.7
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 4.4e-09 65.1 49 65.3
Potri.004G029700 Populus trichocarpa HOM05D012748 ORTHO05D014783 5.7e-09 64.7 42 71.4
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 9.8e-09 63.9 40 75.0
TPR.G19047 Trifolium pratense HOM05D007156 ORTHO05D003871 1.3e-08 63.5 46 63.0
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 2.2e-08 62.8 40 72.5
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 2.8e-08 62.4 46 67.4
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 2.8e-08 62.4 46 67.4
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 3.7e-08 62.0 40 72.5
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 3.7e-08 62.0 40 72.5
Sabra04G0016700 Salix brachista HOM05D007156 ORTHO05D003871 3.7e-08 62.0 44 63.6
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 3.7e-08 62.0 40 72.5
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 4.9e-08 61.6 41 65.9
Dinv18957 Davidia involucrata HOM05D007156 ORTHO05D003871 6.3e-08 61.2 40 72.5
Migut.M00380 Erythranthe guttata HOM05D007156 ORTHO05D003871 6.3e-08 61.2 41 65.9
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 6.3e-08 61.2 41 68.3
PGSC0003DMG400013754 Solanum tuberosum HOM05D007156 ORTHO05D003871 6.3e-08 61.2 38 65.8
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 8.3e-08 60.8 47 59.6
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 8.3e-08 60.8 47 59.6
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 8.3e-08 60.8 47 63.8
Solyc12g005690.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 8.3e-08 60.8 42 59.5
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 1.4e-07 60.1 40 70.0
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 1.8e-07 59.7 39 66.7
Atru.chr6.3108 Acer truncatum HOM05D007156 ORTHO05D003871 2.4e-07 59.3 39 74.4
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.4e-07 59.3 45 60.0
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 2.4e-07 59.3 35 77.1
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 2.4e-07 59.3 47 63.8
Glyma.13G304200 Glycine max HOM05D007156 ORTHO05D003871 3.1e-07 58.9 45 55.6
Lj3g0015957 Lotus japonicus HOM05D007156 ORTHO05D003871 3.1e-07 58.9 35 77.1
unitig_746.g26730 Utricularia gibba HOM05D007156 ORTHO05D003871 3.1e-07 58.9 43 62.8
Actinidia12482 Actinidia chinensis HOM05D007156 ORTHO05D003871 4.1e-07 58.5 51 56.9
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 4.1e-07 58.5 42 64.3
Hma1.2p1_0712F.1_g207550 Hydrangea macrophylla HOM05D007156 ORTHO05D003871 5.4e-07 58.2 39 69.2
Psat7g163320 Pisum sativum HOM05D007156 ORTHO05D003871 5.4e-07 58.2 40 70.0
QL08p034497 Quercus lobata HOM05D007156 ORTHO05D003871 5.4e-07 58.2 39 69.2
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 5.4e-07 58.2 41 68.3
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 5.4e-07 58.2 40 65.0
CiPaw.04G120100 Carya illinoinensis HOM05D007156 ORTHO05D003871 7.0e-07 57.8 39 69.2
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 7.0e-07 57.8 37 70.3
Rhsim02G0116800 Rhododendron simsii HOM05D007156 ORTHO05D003871 7.0e-07 57.8 91 40.7
Sed0007405 Sechium edule HOM05D007156 ORTHO05D003871 7.0e-07 57.8 39 69.2
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 9.2e-07 57.4 41 65.9
Cfa014479 Carpinus fangiana HOM05D007156 ORTHO05D003871 9.2e-07 57.4 39 69.2
Haze_12992 Corylus avellana HOM05D007156 ORTHO05D003871 9.2e-07 57.4 39 69.2
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 9.2e-07 57.4 41 61.0
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 1.2e-06 57.0 41 63.4
Duzib160G0418 Durio zibethinus HOM05D001601 ORTHO05D006936 1.2e-06 57.0 41 58.5
Eucgr.A01740 Eucalyptus grandis HOM05D007156 ORTHO05D003871 1.2e-06 57.0 38 71.1
Solyc07g052990.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 1.2e-06 57.0 41 61.0
Sopen07g026540 Solanum pennellii HOM05D007156 ORTHO05D003871 1.2e-06 57.0 41 61.0
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 1.6e-06 56.6 35 71.4
MBI18_g38397_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.6e-06 56.6 39 69.2
Cpa.g.sc34.47 Carica papaya HOM05D007156 ORTHO05D003871 2.0e-06 56.2 40 67.5
COL.COLO4_13040 Corchorus olitorius HOM05D007156 ORTHO05D003871 2.0e-06 56.2 40 65.0
Thecc.02G165500 Theobroma cacao HOM05D007156 ORTHO05D003871 2.0e-06 56.2 40 67.5
Thecc.06G206300 Theobroma cacao HOM05D001601 ORTHO05D006936 2.0e-06 56.2 42 59.5
Ah.09g237010 Amaranthus hybridus HOM05D012748 ORTHO05D014783 2.7e-06 55.8 51 51.0
EL10Ac7g16230 Beta vulgaris HOM05D007866 ORTHO05D003871 2.7e-06 55.8 37 70.3
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 3.5e-06 55.5 41 68.3
Ciclev10017232m.g Citrus clementina HOM05D007156 ORTHO05D003871 3.5e-06 55.5 42 66.7
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 3.5e-06 55.5 37 62.2
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 3.5e-06 55.5 37 62.2
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 3.5e-06 55.5 37 62.2
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 3.5e-06 55.5 49 49.0
HPP92_022326 Vanilla planifolia HOM05D066303 ORTHO05D051580 3.5e-06 55.5 34 73.5
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 4.5e-06 55.1 40 65.0
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 4.5e-06 55.1 35 68.6
PGSC0003DMG400026188 Solanum tuberosum HOM05D007156 ORTHO05D003871 4.5e-06 55.1 35 68.6
EL10As6g23655 Beta vulgaris HOM05D012748 ORTHO05D014783 5.9e-06 54.7 47 57.4
unitig_899.g15247 Utricularia gibba HOM05D007156 ORTHO05D003871 5.9e-06 54.7 49 51.0
Actinidia24046 Actinidia chinensis HOM05D001601 ORTHO05D006936 7.7e-06 54.3 35 80.0
QL07p028342 Quercus lobata HOM05D007866 ORTHO05D003871 7.7e-06 54.3 48 54.2


User provided reference genes

Program Settings