Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.5e-243 845.9 470 100.0
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.7e-133 480.3 470 64.5
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.0e-122 444.5 474 63.5
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 3.8e-122 442.6 472 61.4
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 7.5e-118 428.3 479 57.0
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 4.1e-116 422.5 454 58.6
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 8.6e-114 414.8 474 57.4
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.9e-113 413.7 344 74.1
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 3.1e-108 396.4 344 71.2
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 4.3e-105 386.0 483 55.1
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 2.1e-104 383.6 467 56.7
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 4.7e-104 382.5 482 54.4
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 6.4e-101 372.1 482 53.1
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 4.6e-99 365.9 460 52.8
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 3.6e-96 356.3 461 54.9
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 8.3e-93 345.1 485 52.8
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.7e-90 337.4 461 52.5
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 1.5e-89 334.3 471 50.7
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 1.2e-88 331.3 470 50.6
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 1.2e-88 331.3 470 50.6
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 8.9e-87 325.1 512 47.7
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 8.3e-85 318.5 448 49.3
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 1.2e-83 314.7 482 47.9
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 8.6e-82 308.5 468 48.5
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 1.1e-81 308.1 397 50.1
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 1.5e-81 307.8 530 45.8
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 2.8e-80 303.5 488 48.6
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 1.8e-79 300.8 484 49.8
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 3.1e-79 300.1 493 46.9
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.5e-78 297.7 439 51.0
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 6.4e-77 292.4 492 45.7
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 3.2e-76 290.0 483 47.2
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 2.1e-75 287.3 465 46.5
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 3.5e-75 286.6 419 47.7
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 1.7e-74 284.3 511 44.8
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 3.9e-74 283.1 508 44.1
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 1.1e-73 281.6 421 47.7
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 3.3e-73 280.0 435 45.5
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 4.3e-73 279.6 490 44.9
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 9.6e-73 278.5 539 43.4
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 1.3e-72 278.1 418 45.2
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 2.8e-72 276.9 514 43.4
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 1.1e-71 275.0 487 43.3
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 3.1e-71 273.5 488 44.7
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 3.1e-71 273.5 544 40.8
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 4.0e-71 273.1 473 47.4
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 6.9e-71 272.3 543 40.9
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 2.0e-70 270.8 480 45.0
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 2.0e-70 270.8 480 45.0
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 2.6e-70 270.4 488 44.1
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 3.4e-70 270.0 452 44.0
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 5.8e-70 269.2 463 45.4
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.7e-69 267.7 511 43.8
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 2.9e-69 266.9 526 43.0
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 9.3e-68 261.9 547 41.7
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 1.2e-67 261.5 541 41.2
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 4.6e-67 259.6 423 45.4
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 7.8e-67 258.8 408 44.4
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 1.0e-66 258.5 473 44.0
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 1.1e-65 255.0 434 43.5
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 1.5e-65 254.6 521 42.6
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 9.6e-65 251.9 461 43.6
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 1.6e-64 251.1 508 43.3
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 2.1e-64 250.8 522 39.8
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 3.6e-64 250.0 386 45.1
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 1.8e-63 247.7 464 42.2
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 5.3e-63 246.1 527 41.7
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 5.8e-62 242.7 426 42.3
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 7.6e-62 242.3 479 42.6
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 4.9e-61 239.6 414 46.4
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 1.1e-60 238.4 369 48.8
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 5.4e-60 236.1 610 35.6
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 1.0e-58 231.9 582 39.0
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 1.3e-58 231.5 445 41.1
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 1.3e-58 231.5 445 41.1
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 1.3e-58 231.5 501 41.9
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 3.9e-58 229.9 393 43.8
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 3.9e-58 229.9 578 37.2
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 5.1e-58 229.6 554 38.3
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 1.5e-57 228.0 393 44.0
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 1.5e-57 228.0 491 39.9
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 5.6e-57 226.1 469 41.6
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 7.4e-57 225.7 505 38.6
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 1.6e-56 224.6 436 44.5
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 8.1e-56 222.2 432 40.0
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 1.4e-55 221.5 505 38.4
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 4.0e-55 219.9 517 36.8
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 2.0e-54 217.6 467 37.5
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 3.4e-54 216.9 482 38.6
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 4.5e-54 216.5 507 39.3
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 5.8e-54 216.1 566 35.7
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 7.6e-54 215.7 422 41.0
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 1.3e-53 214.9 570 37.7
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 2.9e-53 213.8 540 38.1
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 6.5e-53 212.6 482 41.5
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 2.5e-52 210.7 355 46.8
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 3.2e-52 210.3 521 35.9
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 4.2e-52 209.9 572 34.8
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 9.3e-52 208.8 611 36.0
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 9.3e-52 208.8 572 37.2
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 1.2e-51 208.4 403 41.4
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 1.2e-51 208.4 471 36.7
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 1.6e-51 208.0 572 35.0
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 3.5e-51 206.8 490 38.0
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 1.0e-50 205.3 388 43.0
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 3.0e-50 203.8 488 36.9
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 6.7e-50 202.6 487 37.8
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 1.1e-49 201.8 480 38.3
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 1.1e-49 201.8 533 36.8
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 1.9e-49 201.1 477 42.1
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 9.6e-49 198.7 463 39.7
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 8.4e-45 185.7 526 35.4
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 1.9e-44 184.5 583 34.8
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 1.6e-43 181.4 554 33.9
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.3e-42 178.3 231 50.6
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.8e-42 177.9 376 40.7
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 6.7e-42 176.0 514 35.6
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 1.3e-40 171.8 557 32.9
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 2.2e-40 171.0 564 34.6
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 8.2e-40 169.1 549 33.3
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.1e-39 168.7 596 32.9
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 1.4e-39 168.3 544 34.9
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 2.4e-39 167.5 560 35.4
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 3.1e-39 167.2 480 35.0
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 6.9e-39 166.0 226 52.2
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 2.6e-38 164.1 422 36.3
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 4.5e-38 163.3 553 34.5
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 4.5e-38 163.3 541 32.7
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 1.9e-36 157.9 553 33.6
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 3.2e-36 157.1 529 33.5
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 3.2e-36 157.1 429 37.3
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 2.1e-35 154.5 550 30.5
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 3.0e-34 150.6 208 49.5
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 9.7e-33 145.6 531 33.5
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 2.4e-31 141.0 407 33.2
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 4.1e-31 140.2 574 31.4
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 2.0e-30 137.9 425 33.4
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 2.2e-29 134.4 519 32.9
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 2.5e-28 131.0 511 31.9
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 5.5e-28 129.8 530 30.0
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 1.6e-27 128.3 445 36.2
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 2.1e-27 127.9 474 32.5
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 2.1e-27 127.9 440 35.0
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 2.7e-27 127.5 534 30.5
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 6.1e-27 126.3 469 32.6
CSS0014575 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.8e-26 124.8 83 84.3
CSS0018014 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 8.8e-26 122.5 83 83.1
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 9.7e-25 119.0 185 47.0
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 1.5e-22 111.7 546 29.3
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 2.6e-22 110.9 148 49.3
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 2.6e-22 110.9 544 30.7
Lalb_Chr05g0216131 Lupinus albus HOM05D001142 ORTHO05D003453 2.2e-21 107.8 302 34.1
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 1.5e-20 105.1 438 32.4
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 1.6e-19 101.7 435 33.3
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 2.1e-19 101.3 437 32.5
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 2.7e-19 100.9 413 30.5
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 6.1e-19 99.8 157 52.2
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 1.4e-18 98.6 436 32.1
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 1.4e-18 98.6 448 31.7
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 1.1e-17 95.5 484 29.5
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 1.5e-17 95.1 398 29.1
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.5e-17 95.1 468 28.4
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 4.4e-17 93.6 203 38.9
COL.COLO4_36255 Corchorus olitorius HOM05D003733 ORTHO05D004035 1.7e-16 91.7 428 33.9
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 1.1e-15 89.0 436 28.9
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 5.3e-15 86.7 284 32.4
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 4.5e-14 83.6 437 28.6
CARHR207720 Cardamine hirsuta HOM05D003733 ORTHO05D004035 5.9e-14 83.2 411 28.0
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 5.9e-14 83.2 457 28.9
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 7.7e-14 82.8 381 29.1
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 2.2e-13 81.3 91 53.8
Mapoly0034s0125 Marchantia polymorpha HOM05D025130 ORTHO05D030134 8.5e-13 79.3 586 25.6
Ah.03g142000 Amaranthus hybridus HOM05D000288 ORTHO05D000173 1.9e-12 78.2 445 28.5
MD02G1269600 Malus domestica HOM05D003733 ORTHO05D004035 1.2e-09 68.9 132 39.4
Thhalv10026061m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 2.0e-09 68.2 323 29.1
Sc16g0000800 Simmondsia chinensis HOM05D003733 ORTHO05D004035 2.0e-09 68.2 160 38.8
SGA_v2.0_scaffold55G19776 Striga asiatica HOM05D003733 ORTHO05D004035 7.5e-09 66.2 406 26.1
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 6.3e-08 63.2 405 27.4
Dinv36995 Davidia involucrata HOM05D003733 ORTHO05D004035 7.0e-07 59.7 105 43.8
AagrBONN_evm.TU.Sc2ySwM_117.778 Anthoceros agrestis HOM05D025130 ORTHO05D004035 9.1e-07 59.3 135 31.9
Zm00001eb186830 Zea mays HOM05D003733 ORTHO05D004035 9.1e-07 59.3 145 35.2
TAR628G0576 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.2e-06 58.9 45 64.4


User provided reference genes

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