Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008601 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 1.0e-199 699.9 365 100.0
CSS0022704 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 3.1e-196 688.3 365 98.6
CSS0039233 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 4.0e-167 591.7 367 87.2
SGA_v2.0_scaffold119G32763 Striga asiatica HOM05D003693 ORTHO05D004698 2.3e-162 575.9 367 83.9
Dinv43405 Davidia involucrata HOM05D003693 ORTHO05D004698 5.0e-162 574.7 367 83.4
Manes.12G004200 Manihot esculenta HOM05D003693 ORTHO05D004698 1.1e-161 573.5 367 82.6
TAR563G0002 Trochodendron aralioides HOM05D003693 ORTHO05D004698 3.3e-161 572.0 367 82.8
Atru.chr12.1748 Acer truncatum HOM05D003693 ORTHO05D004698 9.5e-161 570.5 367 82.3
Migut.B01266 Erythranthe guttata HOM05D003693 ORTHO05D004698 1.2e-160 570.1 367 83.4
Duzib128G1866 Durio zibethinus HOM05D003693 ORTHO05D004698 1.6e-160 569.7 367 82.0
CiPaw.16G119500 Carya illinoinensis HOM05D003693 ORTHO05D004698 2.1e-160 569.3 367 81.5
Hma1.2p1_0685F.1_g203180 Hydrangea macrophylla HOM05D003693 ORTHO05D004698 1.0e-159 567.0 367 82.3
Eucgr.H01402 Eucalyptus grandis HOM05D003693 ORTHO05D004698 1.4e-159 566.6 367 81.7
Thecc.05G189800 Theobroma cacao HOM05D003693 ORTHO05D004698 1.4e-159 566.6 367 82.3
Haze_19361 Corylus avellana HOM05D003693 ORTHO05D004698 1.8e-159 566.2 369 81.6
Nitab4.5_0005367g0010 Nicotiana tabacum HOM05D003693 ORTHO05D004698 1.8e-159 566.2 367 82.6
vmacro13696 Vaccinium macrocarpon HOM05D003693 ORTHO05D004698 3.0e-159 565.5 367 82.3
Cpa.g.sc39.19 Carica papaya HOM05D003693 ORTHO05D004698 4.0e-159 565.1 367 82.6
Nitab4.5_0001244g0140 Nicotiana tabacum HOM05D003693 ORTHO05D004698 4.0e-159 565.1 367 82.6
Prupe.6G362600 Prunus persica HOM05D003693 ORTHO05D004698 6.8e-159 564.3 367 82.0
GSVIVG01032211001 Vitis vinifera HOM05D003693 ORTHO05D004698 6.8e-159 564.3 367 82.6
Potri.019G054500 Populus trichocarpa HOM05D003693 ORTHO05D004698 8.9e-159 563.9 367 82.3
Thecc.01G406700 Theobroma cacao HOM05D003693 ORTHO05D004698 8.9e-159 563.9 367 81.2
MSTRG.20559 Avicennia marina HOM05D003693 ORTHO05D004698 1.2e-158 563.5 367 82.3
Cfa020929 Carpinus fangiana HOM05D003693 ORTHO05D004698 1.2e-158 563.5 367 82.3
Gorai.012G026300 Gossypium raimondii HOM05D003693 ORTHO05D004698 2.0e-158 562.8 367 81.7
SalBow6G5509 Salvia bowleyana HOM05D003693 ORTHO05D004698 7.5e-158 560.8 367 80.9
SalBow6G6742 Salvia bowleyana HOM05D003693 ORTHO05D004698 7.5e-158 560.8 367 80.9
Peaxi162Scf00694g00440 Petunia axillaris HOM05D003693 ORTHO05D004698 9.8e-158 560.5 365 81.6
CANSAT21G0769 Cannabis sativa HOM05D003693 ORTHO05D004698 1.7e-157 559.7 367 81.5
COL.COLO4_12338 Corchorus olitorius HOM05D003693 ORTHO05D004698 1.7e-157 559.7 367 80.4
MSTRG.17008 Avicennia marina HOM05D003693 ORTHO05D004698 2.2e-157 559.3 367 81.5
Ciclev10011203m.g Citrus clementina HOM05D003693 ORTHO05D004698 2.2e-157 559.3 367 82.3
Duzib268G0828 Durio zibethinus HOM05D003693 ORTHO05D004698 2.2e-157 559.3 367 80.7
MD12G1263800 Malus domestica HOM05D003693 ORTHO05D004698 2.8e-157 558.9 367 81.2
Medtr7g080270 Medicago truncatula HOM05D003693 ORTHO05D004698 2.8e-157 558.9 367 81.7
Sabra19G0063500 Salix brachista HOM05D003693 ORTHO05D004698 2.8e-157 558.9 367 81.5
Gohir.D04G022000 Gossypium hirsutum HOM05D003693 ORTHO05D004698 3.7e-157 558.5 367 81.2
PSO339G5758 Papaver somniferum HOM05D003693 ORTHO05D004698 3.7e-157 558.5 367 80.9
TWI36G1545 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 3.7e-157 558.5 367 81.5
Gohir.A05G393100 Gossypium hirsutum HOM05D003693 ORTHO05D004698 4.9e-157 558.1 367 81.2
Oeu014595.1 Olea europaea HOM05D003693 ORTHO05D004698 4.9e-157 558.1 367 81.5
PSO384G0563 Papaver somniferum HOM05D003693 ORTHO05D004698 4.9e-157 558.1 367 80.9
MD04G1246300 Malus domestica HOM05D003693 ORTHO05D004698 6.3e-157 557.8 367 81.2
Lalb_Chr03g0038731 Lupinus albus HOM05D003693 ORTHO05D004698 1.1e-156 557.0 367 81.5
TPR.G33878 Trifolium pratense HOM05D003693 ORTHO05D004698 1.8e-156 556.2 367 81.7
QL10p037598 Quercus lobata HOM05D003693 ORTHO05D004698 2.4e-156 555.8 366 81.1
Lalb_Chr01g0020541 Lupinus albus HOM05D003693 ORTHO05D004698 3.2e-156 555.4 367 81.5
ClCG11G009710 Citrullus lanatus HOM05D003693 ORTHO05D004698 4.1e-156 555.1 367 80.1
RcHm_v2.0_Chr3g0447661 Rosa chinensis HOM05D003693 ORTHO05D004698 4.1e-156 555.1 369 81.3
TWI18G0649 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 7.0e-156 554.3 367 80.9
Phvul.008G053200 Phaseolus vulgaris HOM05D003693 ORTHO05D004698 9.2e-156 553.9 367 81.2
AUR62023098 Chenopodium quinoa HOM05D003693 ORTHO05D004698 1.2e-155 553.5 367 79.8
Duzib133G0510 Durio zibethinus HOM05D003693 ORTHO05D004698 1.2e-155 553.5 367 79.6
Actinidia08353 Actinidia chinensis HOM05D003693 ORTHO05D004698 1.6e-155 553.1 321 89.7
AUR62009420 Chenopodium quinoa HOM05D003693 ORTHO05D004698 1.6e-155 553.1 367 79.6
Ca_07998_v3 Cicer arietinum L. HOM05D003693 ORTHO05D004698 1.6e-155 553.1 367 80.9
Peaxi162Scf00071g01043 Petunia axillaris HOM05D003693 ORTHO05D004698 1.6e-155 553.1 367 81.2
Rhsim07G0058800 Rhododendron simsii HOM05D003693 ORTHO05D004698 2.0e-155 552.7 372 80.6
CsaV3_2G010560 Cucumis sativus L. HOM05D003693 ORTHO05D004698 3.5e-155 552.0 367 79.6
FAN02G0024 Fragaria x ananassa HOM05D003693 ORTHO05D004698 3.5e-155 552.0 369 80.8
Gohir.D12G103600 Gossypium hirsutum HOM05D003693 ORTHO05D004698 5.9e-155 551.2 369 79.7
Psat3g102600 Pisum sativum HOM05D003693 ORTHO05D004698 5.9e-155 551.2 367 80.4
Lj1g0027377 Lotus japonicus HOM05D003693 ORTHO05D004698 7.8e-155 550.8 367 81.5
TPR.G34077 Trifolium pratense HOM05D003693 ORTHO05D004698 7.8e-155 550.8 367 80.7
Gohir.A12G100800 Gossypium hirsutum HOM05D003693 ORTHO05D004698 1.0e-154 550.4 369 79.4
Aa31LG8G10790 Aethionema arabicum HOM05D003693 ORTHO05D004698 1.3e-154 550.1 367 80.1
EL10Ac2g04376 Beta vulgaris HOM05D003693 ORTHO05D004698 1.3e-154 550.1 367 80.1
CAN.G1619.1 Capsicum annuum HOM05D003693 ORTHO05D004698 1.7e-154 549.7 367 80.7
Glyma.09G249100 Glycine max HOM05D003693 ORTHO05D004698 1.7e-154 549.7 367 80.7
PGSC0003DMG400006778 Solanum tuberosum HOM05D003693 ORTHO05D004698 1.7e-154 549.7 367 80.7
FvH4_6g00360 Fragaria vesca HOM05D003693 ORTHO05D004698 2.3e-154 549.3 369 80.5
FAN09G1864 Fragaria x ananassa HOM05D003693 ORTHO05D004698 2.3e-154 549.3 369 80.5
FAN05G2538 Fragaria x ananassa HOM05D003693 ORTHO05D004698 2.9e-154 548.9 369 80.2
unitig_0.g1393 Utricularia gibba HOM05D003693 ORTHO05D004698 3.9e-154 548.5 367 80.1
FAN14G5956 Fragaria x ananassa HOM05D003693 ORTHO05D004698 1.1e-153 547.0 369 79.9
Cc02_g28770 Coffea canephora HOM05D003693 ORTHO05D004698 1.5e-153 546.6 373 78.0
Solyc01g087870.4 Solanum lycopersicum HOM05D003693 ORTHO05D004698 1.9e-153 546.2 367 80.4
Sopen01g034800 Solanum pennellii HOM05D003693 ORTHO05D004698 1.9e-153 546.2 367 80.4
Glyma.18G243300 Glycine max HOM05D003693 ORTHO05D004698 3.3e-153 545.4 367 80.4
Sed0016989 Sechium edule HOM05D003693 ORTHO05D004698 3.3e-153 545.4 367 79.3
ATR1096G033 Amborella trichopoda HOM05D003693 ORTHO05D004698 5.6e-153 544.7 367 78.5
CARHR100130 Cardamine hirsuta HOM05D003693 ORTHO05D004698 5.6e-153 544.7 367 80.1
SalBow5G4957 Salvia bowleyana HOM05D003693 ORTHO05D004698 5.6e-153 544.7 349 83.7
arahy.Tifrunner.gnm1.ann1.55VZFW Arachis hypogaea HOM05D003693 ORTHO05D004698 7.3e-153 544.3 367 80.9
Sc10g0000370 Simmondsia chinensis HOM05D003693 ORTHO05D004698 1.2e-152 543.5 367 80.1
Aqoxy5G04181 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 1.6e-152 543.1 367 79.6
Sp3g21850 Schrenkiella parvula HOM05D003693 ORTHO05D004698 1.6e-152 543.1 367 79.6
BolC7t41766H Brassica oleracea HOM05D003693 ORTHO05D004698 3.6e-152 542.0 367 79.6
PGR119G0062 Punica granatum HOM05D003693 ORTHO05D004698 6.1e-152 541.2 367 79.0
AL3G39260 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 8.0e-152 540.8 367 79.6
AT3G24090 Arabidopsis thaliana HOM05D003693 ORTHO05D004698 1.0e-151 540.4 367 79.8
BcaC06g35626 Brassica carinata HOM05D003693 ORTHO05D004698 1.0e-151 540.4 367 79.3
C07p12800 Brassica napus HOM05D003693 ORTHO05D004698 1.0e-151 540.4 367 79.3
BraA07t28609Z Brassica rapa HOM05D003693 ORTHO05D004698 1.0e-151 540.4 367 79.3
Thhalv10002424m.g Eutrema salsugineum HOM05D003693 ORTHO05D004698 1.0e-151 540.4 367 79.0
BcaB06g26591 Brassica carinata HOM05D003693 ORTHO05D004698 1.8e-151 539.7 367 79.3
arahy.Tifrunner.gnm1.ann1.RCZ69X Arachis hypogaea HOM05D003693 ORTHO05D004698 2.3e-151 539.3 367 80.4
CDE04G2718 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 2.3e-151 539.3 367 77.1
THA.LOC104821617 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 2.3e-151 539.3 368 78.3
A07p08260 Brassica napus HOM05D003693 ORTHO05D004698 3.1e-151 538.9 367 79.0
BcaB03g14607 Brassica carinata HOM05D003693 ORTHO05D004698 4.0e-151 538.5 368 79.1
BcaC01g03357 Brassica carinata HOM05D003693 ORTHO05D004698 4.0e-151 538.5 368 79.1
A03p43420 Brassica napus HOM05D003693 ORTHO05D004698 4.0e-151 538.5 368 79.1
BolC3t17596H Brassica oleracea HOM05D003693 ORTHO05D004698 4.0e-151 538.5 368 79.1
BraA03t13480Z Brassica rapa HOM05D003693 ORTHO05D004698 4.0e-151 538.5 368 79.1
PGR031G3615 Punica granatum HOM05D003693 ORTHO05D004698 4.0e-151 538.5 367 77.9
Lj8C726G3 Lonicera japonica HOM05D003693 ORTHO05D004698 5.2e-151 538.1 322 86.0
Eucgr.H01630 Eucalyptus grandis HOM05D003693 ORTHO05D004698 6.8e-151 537.7 315 87.9
Gorai.008G112800 Gossypium raimondii HOM05D003693 ORTHO05D004698 1.2e-150 537.0 407 72.0
Carub.0003s2444 Capsella rubella HOM05D003693 ORTHO05D004698 2.6e-150 535.8 367 79.3
THA.LOC104808730 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 2.6e-150 535.8 367 78.5
TAR369G0556 Trochodendron aralioides HOM05D003693 ORTHO05D004698 5.8e-150 534.6 367 79.8
C03p53370 Brassica napus HOM05D003693 ORTHO05D004698 7.5e-150 534.3 368 78.5
SHI13710 Sapria himalayana HOM05D003693 ORTHO05D004698 7.5e-150 534.3 365 77.5
VMungo1383G0289 Vigna mungo HOM05D003693 ORTHO05D004698 9.8e-150 533.9 360 78.9
MELO3C008557.2 Cucumis melo HOM05D003693 ORTHO05D004698 1.3e-149 533.5 367 77.9
MBI19_g25011_MAGBIO Magnolia biondii HOM05D003693 ORTHO05D004698 3.7e-149 531.9 367 77.4
DCAR_029706 Daucus carota HOM05D003693 ORTHO05D004698 1.1e-148 530.4 368 78.0
CSS0029083 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 7.8e-147 524.2 372 79.0
Ah.10g038580 Amaranthus hybridus HOM05D003693 ORTHO05D004698 5.0e-146 521.5 369 76.4
Nn2g12199 Nelumbo nucifera HOM05D003693 ORTHO05D004698 5.0e-146 521.5 318 84.9
Lsat_1_v5_gn_1_104980 Lactuca sativa HOM05D003693 ORTHO05D004698 8.6e-146 520.8 367 76.6
Cc00_g28470 Coffea canephora HOM05D003693 ORTHO05D004698 1.1e-145 520.4 374 75.4
ECA248G0053 Erigeron canadensis HOM05D003693 ORTHO05D004698 4.3e-145 518.5 367 75.7
HanXRQChr06g0179741 Helianthus annuus HOM05D003693 ORTHO05D004698 8.0e-144 514.2 367 75.2
SEGI_39911 Sequoiadendron giganteum HOM05D003693 ORTHO05D004698 4.4e-142 508.4 367 73.6
SMO301G0028 Selaginella moellendorffii HOM05D003693 ORTHO05D004698 2.4e-140 502.7 389 70.7
Nitab4.5_0001676g0080 Nicotiana tabacum HOM05D003693 ORTHO05D004698 1.2e-139 500.4 365 75.6
Mapoly0131s0027 Marchantia polymorpha HOM05D003693 ORTHO05D004698 8.6e-138 494.2 367 71.7
HPP92_019436 Vanilla planifolia HOM05D003693 ORTHO05D004698 4.7e-136 488.4 367 72.2
Zm00001eb163520 Zea mays HOM05D003693 ORTHO05D004698 4.0e-135 485.3 368 72.3
Pp3c1_10100 Physcomitrium patens HOM05D003693 ORTHO05D004698 2.0e-134 483.0 367 71.1
Cc00_g27460 Coffea canephora HOM05D003693 ORTHO05D004698 1.7e-133 479.9 370 71.4
Pp3c2_32740 Physcomitrium patens HOM05D003693 ORTHO05D004698 3.7e-133 478.8 367 70.8
Os12g0131100 Oryza sativa ssp. japonica HOM05D003693 ORTHO05D004698 3.0e-130 469.2 339 74.0
AL8G20490 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 4.3e-129 465.3 367 71.1
Eucgr.H01633 Eucalyptus grandis HOM05D003693 ORTHO05D004698 2.8e-128 462.6 339 73.7
CDE07G0727 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 4.9e-125 451.8 277 83.8
AL8G20570 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 2.4e-119 433.0 305 78.0
Manes.13G004500 Manihot esculenta HOM05D003693 ORTHO05D004698 6.2e-112 408.3 367 64.3
AagrBONN_evm.TU.Sc2ySwM_344.1788 Anthoceros agrestis HOM05D003693 ORTHO05D004698 4.6e-107 392.1 265 76.6
MCO09G229 Micromonas commoda HOM05D003693 ORTHO05D004698 6.0e-107 391.7 369 58.3
CSS0010682 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 2.9e-101 372.9 238 83.2
Cre08.g375500 Chlamydomonas reinhardtii HOM05D003693 ORTHO05D004698 1.3e-98 364.0 370 54.3
PRCOL_00001226 Prasinoderma coloniale HOM05D003693 ORTHO05D004698 2.5e-97 359.8 362 56.4
CDE08G0281 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 6.5e-93 345.1 221 82.8
Eucgr.H01403 Eucalyptus grandis HOM05D003693 ORTHO05D004698 3.1e-79 299.7 179 85.5
Cc00_g31680 Coffea canephora HOM05D003693 ORTHO05D004698 1.2e-70 271.2 219 68.5
Eucgr.H01634 Eucalyptus grandis HOM05D003693 ORTHO05D004698 1.6e-70 270.8 235 68.1
Lj9A641G59 Lonicera japonica HOM05D003693 ORTHO05D004698 1.6e-70 270.8 163 85.9
Dinv09309 Davidia involucrata HOM05D003693 ORTHO05D004698 4.7e-67 259.2 149 87.2
Actinidia19423 Actinidia chinensis HOM05D003693 ORTHO05D004698 1.4e-63 247.7 248 60.9
Eucgr.H01405 Eucalyptus grandis HOM05D003693 ORTHO05D004698 8.5e-61 238.4 214 67.3
Aqoxy2G01319 Aquilegia oxysepala HOM05D003693 ORTHO05D031300 4.7e-59 232.6 141 83.7
Aqoxy1G02791 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 1.7e-53 214.2 151 75.5
Aqoxy1G02790 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 7.2e-52 208.8 168 68.5
Haze_26883 Corylus avellana HOM05D003693 ORTHO05D004698 9.8e-49 198.4 180 56.1
Lsat_1_v5_gn_3_45201 Lactuca sativa HOM05D003693 ORTHO05D004698 3.5e-46 189.9 176 62.5
HPP92_019410 Vanilla planifolia HOM05D003693 ORTHO05D004698 1.9e-44 184.1 181 57.5
Sed0025004 Sechium edule HOM05D003693 ORTHO05D004698 8.3e-40 168.7 138 65.2
CDE08G0573 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 8.9e-34 148.7 128 61.7
Lj9A641G58 Lonicera japonica HOM05D003693 ORTHO05D004698 6.4e-32 142.5 176 52.3
Lsat_1_v5_gn_1_126760 Lactuca sativa HOM05D002996 ORTHO05D004698 2.7e-30 137.1 81 85.2
Dinv23140 Davidia involucrata HOM05D004830 ORTHO05D005310 3.9e-29 133.3 74 87.8
Zm00001eb405240 Zea mays HOM05D003693 ORTHO05D004698 1.6e-19 101.3 90 62.2
Lsat_1_v5_gn_2_39580 Lactuca sativa HOM05D003693 ORTHO05D004698 8.9e-18 95.5 61 78.7
CDE04G0915 Ceratophyllum demersum HOM05D003693 ORTHO05D021141 1.4e-15 88.2 69 63.8
Migut.C00049 Erythranthe guttata HOM05D003693 ORTHO05D004698 2.1e-11 74.3 84 54.8
CDE02G0831 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 3.6e-11 73.6 41 85.4


User provided reference genes

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