Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 1.3e-182 642.9 317 100.0
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 6.4e-121 438.0 312 69.9
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 1.4e-115 420.2 318 67.9
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 2.3e-115 419.5 318 65.4
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 1.9e-109 399.8 315 64.4
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 1.3e-94 350.5 311 57.9
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 1.7e-94 350.1 310 56.1
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 2.8e-92 342.8 315 51.7
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 4.8e-92 342.0 317 57.4
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 5.3e-91 338.6 285 60.7
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 2.6e-90 336.3 308 56.8
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 3.4e-90 335.9 308 56.8
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 7.4e-85 318.2 300 53.3
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 3.6e-84 315.8 263 58.2
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 1.1e-83 314.3 339 50.1
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 4.0e-83 312.4 296 53.4
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 5.3e-83 312.0 300 51.0
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 9.0e-83 311.2 313 54.0
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 1.2e-82 310.8 302 53.3
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 3.4e-82 309.3 300 51.0
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.4e-82 309.3 300 51.0
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 4.5e-82 308.9 300 51.0
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 1.7e-81 307.0 300 51.0
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.9e-81 306.2 300 50.0
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.9e-81 306.2 300 50.0
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 1.2e-79 300.8 317 50.5
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 4.6e-79 298.9 317 49.8
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 7.9e-79 298.1 311 50.5
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 1.0e-78 297.7 286 51.0
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 2.3e-78 296.6 252 54.8
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 3.3e-77 292.7 294 51.0
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 4.3e-77 292.4 294 51.0
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 8.1e-76 288.1 253 54.5
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 1.1e-75 287.7 237 57.8
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 1.1e-75 287.7 271 53.1
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 1.4e-75 287.3 278 52.5
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 2.4e-75 286.6 307 50.5
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 1.2e-74 284.3 306 49.7
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 1.5e-74 283.9 292 49.7
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 1.5e-74 283.9 280 52.1
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 2.6e-74 283.1 267 50.6
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 2.6e-74 283.1 255 54.5
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 2.6e-74 283.1 253 55.3
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 3.4e-74 282.7 264 52.7
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 4.5e-74 282.3 291 50.2
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 3.8e-73 279.3 308 46.1
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 4.9e-73 278.9 255 53.3
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 2.1e-71 273.5 300 47.3
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 2.1e-71 273.5 300 47.3
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 2.1e-71 273.5 300 47.3
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 2.7e-71 273.1 297 48.5
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 4.6e-71 272.3 315 46.0
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 7.9e-71 271.6 260 51.5
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 8.7e-70 268.1 262 50.0
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 3.3e-69 266.2 282 47.5
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 4.8e-68 262.3 308 44.8
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 4.8e-68 262.3 293 46.1
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 1.1e-67 261.2 309 44.3
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 1.8e-67 260.4 262 52.3
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 1.8e-67 260.4 302 45.4
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 3.1e-67 259.6 317 44.8
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 5.3e-67 258.8 220 55.9
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 6.9e-67 258.5 309 45.3
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 2.6e-66 256.5 287 46.3
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 2.1e-63 246.9 279 50.5
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.1e-63 245.4 252 50.8
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 7.9e-63 245.0 272 45.2
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 1.0e-62 244.6 291 45.0
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 2.3e-62 243.4 272 43.8
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 3.9e-62 242.7 224 58.5
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 3.9e-62 242.7 310 42.9
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 3.9e-62 242.7 245 49.8
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 3.9e-62 242.7 309 43.0
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 5.1e-62 242.3 310 42.3
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.7e-62 241.9 256 49.2
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 8.7e-62 241.5 253 48.6
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 1.1e-61 241.1 309 43.0
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 2.5e-61 240.0 301 43.9
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.5e-61 240.0 262 48.5
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.3e-61 239.6 246 50.0
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.3e-61 239.6 262 48.5
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.3e-61 239.6 246 50.0
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 5.7e-61 238.8 256 47.7
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.7e-61 238.8 246 49.6
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.7e-61 238.8 246 49.6
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.7e-61 238.8 246 49.6
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.7e-61 238.8 246 49.6
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.3e-60 237.7 246 49.6
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 1.6e-60 237.3 252 46.4
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 3.7e-60 236.1 294 41.8
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 6.3e-60 235.3 293 42.3
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 3.1e-59 233.0 252 47.2
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.1e-59 233.0 246 49.2
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 1.5e-58 230.7 285 43.2
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 5.0e-57 225.7 291 43.0
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 1.1e-56 224.6 269 46.1
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 1.9e-56 223.8 291 43.0
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 1.9e-56 223.8 291 43.0
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.7e-55 219.9 231 50.2
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 1.1e-53 214.5 275 41.1
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 3.3e-53 213.0 282 43.3
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 5.7e-53 212.2 222 54.1
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 1.7e-52 210.7 174 59.2
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 2.0e-50 203.8 282 41.8
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 2.6e-50 203.4 292 41.4
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 3.4e-50 203.0 295 42.0
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 4.5e-50 202.6 297 41.1
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 1.3e-49 201.1 281 42.0
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 2.9e-49 199.9 261 44.4
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 6.5e-49 198.7 256 43.8
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 1.9e-48 197.2 252 43.7
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 4.2e-48 196.1 302 39.1
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 7.2e-48 195.3 280 41.4
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 7.2e-48 195.3 269 38.7
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 2.7e-47 193.4 259 41.7
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 2.7e-47 193.4 282 40.4
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 2.7e-47 193.4 282 40.4
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 3.6e-47 193.0 282 40.4
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 2.2e-44 183.7 268 39.2
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 2.8e-44 183.3 251 40.6
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 1.8e-43 180.6 221 41.6
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.1e-43 179.5 200 46.0
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 4.1e-43 179.5 251 40.6
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.2e-42 177.9 165 50.3
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.2e-42 177.9 165 50.3
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.0e-41 174.9 165 49.7
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 2.9e-41 173.3 248 39.5
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 2.9e-41 173.3 248 39.9
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 5.0e-41 172.6 241 39.0
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 2.5e-40 170.2 188 45.7
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 3.2e-40 169.9 141 59.6
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 5.7e-37 159.1 219 40.2
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 1.7e-36 157.5 255 35.3
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.8e-36 156.8 131 59.5
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 8.2e-36 155.2 234 38.9
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.8e-33 146.4 162 50.0
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.2e-29 134.8 136 52.9
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 3.5e-26 123.2 88 65.9
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 3.2e-24 116.7 200 33.0
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 1.6e-18 97.8 209 34.9
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 5.9e-18 95.9 101 45.5
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 1.0e-17 95.1 197 32.5
SEGI_33873 Sequoiadendron giganteum HOM05D005023 ORTHO05D006009 8.9e-14 82.0 79 50.6
SalBow6G7173 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.1e-11 73.2 88 51.1
AagrBONN_evm.TU.Sc2ySwM_344.1294 Anthoceros agrestis HOM05D005023 ORTHO05D006009 3.5e-10 70.1 150 32.0
SalBow6G0459 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.0e-09 66.2 74 50.0


User provided reference genes

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