Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008581 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 9.6e-125 450.3 246 100.0
CSS0039108 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 3.1e-123 445.3 244 99.6
CSS0013807 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 1.9e-112 409.5 235 96.6
Dinv15385 Davidia involucrata HOM05D003590 ORTHO05D004290 1.3e-108 396.7 247 88.3
Dinv29086 Davidia involucrata HOM05D003590 ORTHO05D004290 1.7e-105 386.3 247 85.4
TAR362G0082 Trochodendron aralioides HOM05D003590 ORTHO05D004290 7.2e-104 380.9 246 84.1
Nitab4.5_0004390g0060 Nicotiana tabacum HOM05D003590 ORTHO05D004290 1.7e-100 369.8 244 81.6
PGSC0003DMG400016231 Solanum tuberosum HOM05D003590 ORTHO05D004290 2.2e-100 369.4 244 81.1
Solyc11g008990.2 Solanum lycopersicum HOM05D003590 ORTHO05D004290 4.8e-100 368.2 244 80.7
Sopen11g004770 Solanum pennellii HOM05D003590 ORTHO05D004290 1.8e-99 366.3 244 80.3
CAN.G1177.3 Capsicum annuum HOM05D003590 ORTHO05D004290 2.9e-97 359.0 244 79.9
Peaxi162Scf00074g01833 Petunia axillaris HOM05D003590 ORTHO05D004290 3.8e-97 358.6 239 81.2
Migut.F01864 Erythranthe guttata HOM05D003590 ORTHO05D004290 6.5e-97 357.8 248 79.4
GSVIVG01019065001 Vitis vinifera HOM05D003590 ORTHO05D004290 1.4e-96 356.7 245 80.0
SalBow6G6444 Salvia bowleyana HOM05D003590 ORTHO05D004290 2.5e-96 355.9 244 79.1
CDE08G0825 Ceratophyllum demersum HOM05D003590 ORTHO05D004290 4.2e-96 355.1 246 80.5
MSTRG.8205 Avicennia marina HOM05D003590 ORTHO05D004290 2.1e-95 352.8 249 79.1
Nn7g37627 Nelumbo nucifera HOM05D003590 ORTHO05D004290 2.1e-95 352.8 246 80.9
Sc06g0005010 Simmondsia chinensis HOM05D003590 ORTHO05D004290 4.7e-95 351.7 243 79.0
MBI07_g22611_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 3.9e-94 348.6 246 78.5
Cc09_g03870 Coffea canephora HOM05D003590 ORTHO05D004290 3.3e-93 345.5 239 79.9
Actinidia03270 Actinidia chinensis HOM05D003590 ORTHO05D004290 9.7e-93 344.0 248 80.6
AUR62006641 Chenopodium quinoa HOM05D003590 ORTHO05D004290 1.3e-92 343.6 248 76.2
Eucgr.K00001 Eucalyptus grandis HOM05D003590 ORTHO05D004290 1.7e-92 343.2 249 78.3
Ah.06g195400 Amaranthus hybridus HOM05D003590 ORTHO05D004290 3.7e-92 342.0 247 75.3
Eucgr.B01427 Eucalyptus grandis HOM05D003590 ORTHO05D004290 6.3e-92 341.3 249 77.5
PGR119G1440 Punica granatum HOM05D003590 ORTHO05D004290 1.4e-91 340.1 246 78.9
Prupe.1G203200 Prunus persica HOM05D003590 ORTHO05D004290 2.4e-91 339.3 242 78.5
Nn1g09673 Nelumbo nucifera HOM05D003590 ORTHO05D004290 4.1e-91 338.6 247 78.5
HanXRQChr05g0149811 Helianthus annuus HOM05D003590 ORTHO05D004290 7.0e-91 337.8 244 77.5
Potri.006G123600 Populus trichocarpa HOM05D003590 ORTHO05D004290 9.1e-91 337.4 213 85.0
arahy.Tifrunner.gnm1.ann1.SY3MF3 Arachis hypogaea HOM05D003590 ORTHO05D004290 1.2e-90 337.0 222 82.0
MD17G1177400 Malus domestica HOM05D003590 ORTHO05D004290 1.2e-90 337.0 250 76.8
Oeu064494.2 Olea europaea HOM05D003590 ORTHO05D004290 1.2e-90 337.0 289 67.5
arahy.Tifrunner.gnm1.ann1.YL8857 Arachis hypogaea HOM05D003590 ORTHO05D004290 2.6e-90 335.9 215 83.7
Eucgr.A00018 Eucalyptus grandis HOM05D003590 ORTHO05D004290 7.7e-90 334.3 242 76.0
MD00G1019200 Malus domestica HOM05D003590 ORTHO05D004290 1.3e-89 333.6 242 77.3
Ciclev10021047m.g Citrus clementina HOM05D003590 ORTHO05D004290 2.9e-89 332.4 242 76.9
Duzib151G0409 Durio zibethinus HOM05D003590 ORTHO05D004290 3.8e-89 332.0 246 76.0
EL10Ac4g10000 Beta vulgaris HOM05D003590 ORTHO05D004290 5.0e-89 331.6 248 73.0
Sabra06G0097800 Salix brachista HOM05D003590 ORTHO05D004290 6.5e-89 331.3 215 84.2
Sed0008844 Sechium edule HOM05D003590 ORTHO05D004290 8.5e-89 330.9 238 77.3
Lsat_1_v5_gn_8_26121 Lactuca sativa HOM05D003590 ORTHO05D004290 1.1e-88 330.5 247 74.9
ClCG07G015120 Citrullus lanatus HOM05D003590 ORTHO05D004290 1.9e-88 329.7 245 77.1
FvH4_2g19990 Fragaria vesca HOM05D003590 ORTHO05D004290 1.9e-88 329.7 238 76.1
Manes.11G128000 Manihot esculenta HOM05D003590 ORTHO05D004290 3.2e-88 328.9 220 82.7
MELO3C017774.2 Cucumis melo HOM05D003590 ORTHO05D004290 4.2e-88 328.6 242 76.4
MBI17_g21475_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 7.2e-88 327.8 218 84.4
QL10p052769 Quercus lobata HOM05D003590 ORTHO05D004290 7.2e-88 327.8 251 74.1
CsaV3_4G002670 Cucumis sativus L. HOM05D003590 ORTHO05D004290 9.4e-88 327.4 242 76.4
PSO339G4307 Papaver somniferum HOM05D003590 ORTHO05D004290 9.4e-88 327.4 244 75.8
HanXRQChr16g0500391 Helianthus annuus HOM05D003590 ORTHO05D004290 1.2e-87 327.0 246 76.0
THA.LOC104805702 Tarenaya hassleriana HOM05D003590 ORTHO05D004290 1.2e-87 327.0 250 73.6
TWI36G1101 Tripterygium wilfordii HOM05D003590 ORTHO05D004290 1.2e-87 327.0 204 84.8
RcHm_v2.0_Chr6g0285711 Rosa chinensis HOM05D003590 ORTHO05D004290 2.1e-87 326.2 245 74.7
Thecc.04G169500 Theobroma cacao HOM05D003590 ORTHO05D004290 2.1e-87 326.2 245 75.5
Phvul.008G099200 Phaseolus vulgaris HOM05D003590 ORTHO05D004290 4.7e-87 325.1 241 77.2
CANSAT64G0301 Cannabis sativa HOM05D003590 ORTHO05D004290 8.0e-87 324.3 240 75.4
CiPaw.01G172800 Carya illinoinensis HOM05D003590 ORTHO05D004290 8.0e-87 324.3 250 75.6
Dinv33190 Davidia involucrata HOM05D003590 ORTHO05D004290 8.0e-87 324.3 249 74.3
Cfa015230 Carpinus fangiana HOM05D003590 ORTHO05D004290 1.0e-86 323.9 242 76.0
PSO384G2196 Papaver somniferum HOM05D003590 ORTHO05D004290 1.0e-86 323.9 250 74.0
Psat7g208480 Pisum sativum HOM05D003590 ORTHO05D004290 1.0e-86 323.9 230 80.0
Sed0014148 Sechium edule HOM05D003590 ORTHO05D004290 1.0e-86 323.9 238 76.1
VMungo1383G1305 Vigna mungo HOM05D003590 ORTHO05D004290 1.0e-86 323.9 215 83.7
TPR.G34214 Trifolium pratense HOM05D003590 ORTHO05D004290 1.8e-86 323.2 230 79.1
CiPaw.02G102900 Carya illinoinensis HOM05D003590 ORTHO05D004290 4.0e-86 322.0 243 77.4
Manes.04G049785 Manihot esculenta HOM05D003590 ORTHO05D004290 5.2e-86 321.6 215 81.9
RcHm_v2.0_Chr2g0122441 Rosa chinensis HOM05D003590 ORTHO05D004290 5.2e-86 321.6 256 72.7
Atru.chr4.1363 Acer truncatum HOM05D003590 ORTHO05D004290 1.1e-85 320.5 242 75.6
Ca_20810_v3 Cicer arietinum L. HOM05D003590 ORTHO05D004290 2.0e-85 319.7 230 79.6
Lj1A579G41 Lonicera japonica HOM05D003590 ORTHO05D004290 2.0e-85 319.7 204 83.3
Rhsim05G0167200 Rhododendron simsii HOM05D003590 ORTHO05D004290 2.0e-85 319.7 297 66.0
Glyma.11G124800 Glycine max HOM05D003590 ORTHO05D004290 2.6e-85 319.3 232 79.3
Potri.016G099400 Populus trichocarpa HOM05D003590 ORTHO05D004290 2.6e-85 319.3 210 82.9
Aa31LG2G2380 Aethionema arabicum HOM05D003590 ORTHO05D004290 7.5e-85 317.8 251 70.1
Gohir.A10G141800 Gossypium hirsutum HOM05D003590 ORTHO05D004290 9.7e-85 317.4 249 73.1
Gohir.D10G124700 Gossypium hirsutum HOM05D003590 ORTHO05D004290 1.7e-84 316.6 249 72.7
Gorai.011G137800 Gossypium raimondii HOM05D003590 ORTHO05D004290 1.7e-84 316.6 249 72.7
PGR042G3827 Punica granatum HOM05D003590 ORTHO05D004290 1.7e-84 316.6 247 75.3
AT1G65260 Arabidopsis thaliana HOM05D003590 ORTHO05D004290 2.2e-84 316.2 250 71.6
CANSAT54G1837 Cannabis sativa HOM05D003590 ORTHO05D004290 2.2e-84 316.2 241 74.7
Glyma.12G049400 Glycine max HOM05D003590 ORTHO05D004290 2.2e-84 316.2 238 77.3
CARHR056900 Cardamine hirsuta HOM05D003590 ORTHO05D004290 2.8e-84 315.8 251 71.3
Duzib268G1650 Durio zibethinus HOM05D003590 ORTHO05D004290 2.8e-84 315.8 252 72.2
AL2G20260 Arabidopsis lyrata HOM05D003590 ORTHO05D004290 4.8e-84 315.1 249 71.5
FAN27G0950 Fragaria x ananassa HOM05D003590 ORTHO05D004290 4.8e-84 315.1 266 68.4
Carub.0006s2551 Capsella rubella HOM05D003590 ORTHO05D004290 6.3e-84 314.7 249 70.7
HPP92_009006 Vanilla planifolia HOM05D003590 ORTHO05D004290 8.2e-84 314.3 245 73.9
Gohir.A02G091600 Gossypium hirsutum HOM05D003590 ORTHO05D004290 1.1e-83 313.9 218 78.4
Medtr4g068210 Medicago truncatula HOM05D003590 ORTHO05D004290 1.1e-83 313.9 231 77.5
SGA_v2.0_scaffold62G21494 Striga asiatica HOM05D004200 ORTHO05D004996 2.4e-83 312.8 240 72.5
Gohir.D02G109000 Gossypium hirsutum HOM05D003590 ORTHO05D004290 3.1e-83 312.4 222 77.9
Lalb_Chr19g0138461 Lupinus albus HOM05D003590 ORTHO05D004290 3.1e-83 312.4 241 74.7
FAN24G1875 Fragaria x ananassa HOM05D003590 ORTHO05D004290 5.3e-83 311.6 278 65.5
Lj3g0023284 Lotus japonicus HOM05D003590 ORTHO05D004290 5.3e-83 311.6 247 73.7
Duzib212G0521 Durio zibethinus HOM05D003590 ORTHO05D004290 7.0e-83 311.2 250 71.2
FAN26G3423 Fragaria x ananassa HOM05D003590 ORTHO05D004290 7.0e-83 311.2 263 70.3
FAN15G3511 Fragaria x ananassa HOM05D003590 ORTHO05D004290 9.1e-83 310.8 276 65.6
Lalb_Chr07g0192831 Lupinus albus HOM05D003590 ORTHO05D004290 1.2e-82 310.5 232 76.7
SGA_v2.0_scaffold122G33190 Striga asiatica HOM05D003590 ORTHO05D004290 1.2e-82 310.5 303 63.0
vmacro00650 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 1.2e-82 310.5 245 73.9
vmacro00679 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 2.0e-82 309.7 245 73.9
Gorai.005G124600 Gossypium raimondii HOM05D003590 ORTHO05D004290 2.7e-82 309.3 222 78.4
Sp5g19930 Schrenkiella parvula HOM05D003590 ORTHO05D004290 2.7e-82 309.3 249 69.9
Aqoxy2G04149 Aquilegia oxysepala HOM05D003590 ORTHO05D004290 4.5e-82 308.5 248 71.4
unitig_52.g17513 Utricularia gibba HOM05D003590 ORTHO05D004290 4.5e-82 308.5 248 71.4
COL.COLO4_10136 Corchorus olitorius HOM05D003590 ORTHO05D004290 1.0e-81 307.4 204 82.8
Phvul.008G052900 Phaseolus vulgaris HOM05D003590 ORTHO05D004290 1.0e-81 307.4 245 70.2
BcaB05g24099 Brassica carinata HOM05D003590 ORTHO05D004290 1.7e-81 306.6 245 70.2
C02p21260 Brassica napus HOM05D003590 ORTHO05D004290 2.2e-81 306.2 245 70.2
Lsat_1_v5_gn_9_37260 Lactuca sativa HOM05D003590 ORTHO05D004290 2.2e-81 306.2 247 71.7
Rhsim09G0012200 Rhododendron simsii HOM05D003590 ORTHO05D004290 2.2e-81 306.2 238 74.8
BcaC03g14688 Brassica carinata HOM05D003590 ORTHO05D004290 2.9e-81 305.8 245 69.8
BolC2t08266H Brassica oleracea HOM05D003590 ORTHO05D004290 3.8e-81 305.4 245 70.2
Thhalv10018833m.g Eutrema salsugineum HOM05D003590 ORTHO05D004290 3.8e-81 305.4 249 69.5
A02p13120 Brassica napus HOM05D003590 ORTHO05D004290 6.5e-81 304.7 245 69.8
BraA02t06368Z Brassica rapa HOM05D003590 ORTHO05D004290 6.5e-81 304.7 245 69.8
Glyma.18G243700 Glycine max HOM05D003590 ORTHO05D004290 1.5e-80 303.5 236 71.2
ATR0743G202 Amborella trichopoda HOM05D003590 ORTHO05D004290 1.9e-80 303.1 204 82.8
Os01g0895100 Oryza sativa ssp. japonica HOM05D003590 ORTHO05D004290 9.4e-80 300.8 244 70.5
Zm00001eb144840 Zea mays HOM05D003590 ORTHO05D004290 2.7e-79 299.3 244 70.1
Zm00001eb365760 Zea mays HOM05D003590 ORTHO05D004290 3.6e-79 298.9 244 70.5
Sabra16G0098800 Salix brachista HOM05D003590 ORTHO05D004290 6.1e-79 298.1 225 75.1
Oeu010166.1 Olea europaea HOM05D003590 ORTHO05D004290 8.0e-79 297.7 176 92.0
Actinidia27105 Actinidia chinensis HOM05D003590 ORTHO05D004290 2.3e-78 296.2 246 70.7
Lj1g0027383 Lotus japonicus HOM05D003590 ORTHO05D004290 1.5e-77 293.5 245 68.2
DCAR_023942 Daucus carota HOM05D003590 ORTHO05D004290 1.3e-76 290.4 193 81.9
Cpa.g.sc9.339 Carica papaya HOM05D003590 ORTHO05D004290 1.7e-76 290.0 240 70.8
FvH4_6g53380 Fragaria vesca HOM05D003590 ORTHO05D004290 2.2e-76 289.7 237 68.8
Haze_01407 Corylus avellana HOM05D003590 ORTHO05D004290 2.4e-75 286.2 174 87.9
DCAR_002151 Daucus carota HOM05D003590 ORTHO05D004290 5.4e-75 285.0 204 78.4
Hund21913 Selenicereus undatus HOM05D003590 ORTHO05D004290 5.9e-74 281.6 233 70.4
GSVIVG01038103001 Vitis vinifera HOM05D003590 ORTHO05D004290 1.0e-73 280.8 174 86.8
Lj3A152T20 Lonicera japonica HOM05D003590 ORTHO05D004290 1.3e-73 280.4 174 86.8
Hund07359 Selenicereus undatus HOM05D003590 ORTHO05D004290 8.0e-71 271.2 242 66.5
PSO782G1591 Papaver somniferum HOM05D003590 ORTHO05D004290 1.8e-70 270.0 241 66.0
Mapoly0058s0048 Marchantia polymorpha HOM05D003590 ORTHO05D004290 6.8e-70 268.1 262 60.7
Pp3c2_28040 Physcomitrium patens HOM05D003590 ORTHO05D004290 1.7e-68 263.5 244 62.7
PSO478G1249 Papaver somniferum HOM05D003590 ORTHO05D004290 8.3e-68 261.2 241 64.3
Pp3c7_13570 Physcomitrium patens HOM05D003590 ORTHO05D004290 1.1e-67 260.8 211 69.2
Nitab4.5_0009796g0040 Nicotiana tabacum HOM05D003590 ORTHO05D004290 9.2e-67 257.7 244 65.2
SEGI_22814 Sequoiadendron giganteum HOM05D003590 ORTHO05D004290 1.0e-65 254.2 241 61.0
FvH4_3g16870 Fragaria vesca HOM05D003590 ORTHO05D004290 1.3e-65 253.8 238 63.0
SMO115G0200 Selaginella moellendorffii HOM05D003590 ORTHO05D004290 4.3e-64 248.8 178 74.2
RcHm_v2.0_Chr5g0028111 Rosa chinensis HOM05D003590 ORTHO05D004290 5.6e-64 248.4 246 62.2
AagrBONN_evm.TU.Sc2ySwM_228.379 Anthoceros agrestis HOM05D003590 ORTHO05D004290 1.8e-62 243.4 174 74.7
Hma1.2p1_0831F.1_g225440 Hydrangea macrophylla HOM05D003590 ORTHO05D004290 1.7e-60 236.9 173 76.3
CBR_g79424 Chara braunii HOM05D003590 ORTHO05D004290 1.1e-59 234.2 172 72.1
ECA246G2345 Erigeron canadensis HOM05D003590 ORTHO05D004290 2.0e-58 229.9 139 91.4
Pp3c10_14840 Physcomitrium patens HOM05D003590 ORTHO05D004290 8.9e-54 214.5 239 53.6
Cpa.g.sc123.34 Carica papaya HOM05D003590 ORTHO05D004290 1.5e-53 213.8 199 63.3
vmacro19566 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 2.6e-53 213.0 139 79.9
PRCOL_00001168 Prasinoderma coloniale HOM05D003590 ORTHO05D004290 3.7e-52 209.1 178 62.4
SHI32795 Sapria himalayana HOM05D003590 ORTHO05D004290 2.4e-51 206.5 217 58.5
Lsat_1_v5_gn_1_99340 Lactuca sativa HOM05D003590 ORTHO05D004290 3.3e-48 196.1 126 86.5
AagrBONN_evm.TU.Sc2ySwM_228.2375 Anthoceros agrestis HOM05D003590 ORTHO05D004290 3.1e-46 189.5 226 50.4
FAN19G0667 Fragaria x ananassa HOM05D003590 ORTHO05D004290 2.9e-44 183.0 172 62.2
Cre13.g583550 Chlamydomonas reinhardtii HOM05D003590 ORTHO05D004290 3.6e-39 166.0 161 54.0
FAN11G2382 Fragaria x ananassa HOM05D003590 ORTHO05D004290 8.1e-39 164.9 139 67.6
Cre11.g468050 Chlamydomonas reinhardtii HOM05D003590 ORTHO05D004290 3.1e-38 162.9 175 50.9
CBR_g16972 Chara braunii HOM05D003590 ORTHO05D004290 4.9e-36 155.6 242 40.1
MD15G1434500 Malus domestica HOM05D003590 ORTHO05D004290 8.4e-36 154.8 93 82.8
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 2.1e-34 150.2 213 46.0
ECA246G3922 Erigeron canadensis HOM05D003590 ORTHO05D004290 3.0e-33 146.4 136 64.7
Lj4g0013306 Lotus japonicus HOM05D003590 ORTHO05D004290 1.5e-32 144.1 94 79.8
Dinv15392 Davidia involucrata HOM05D003590 ORTHO05D004290 1.3e-28 131.0 81 90.1
vmacro19565 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 4.9e-28 129.0 76 94.7
FAN19G0592 Fragaria x ananassa HOM05D003590 ORTHO05D004290 1.9e-27 127.1 123 60.2
AL2G21940 Arabidopsis lyrata HOM05D003590 ORTHO05D004290 9.3e-27 124.8 124 57.3
TWI36G0235 Tripterygium wilfordii HOM05D003590 ORTHO05D004290 3.9e-25 119.4 71 91.5
AL2G21120 Arabidopsis lyrata HOM05D003590 ORTHO05D004290 6.6e-25 118.6 125 57.6
MCO10G215 Micromonas commoda HOM05D003590 ORTHO05D004290 3.3e-24 116.3 181 43.1
FAN16G0742 Fragaria x ananassa HOM05D003590 ORTHO05D004290 4.3e-24 115.9 139 53.2
QL11p022255 Quercus lobata HOM05D003590 ORTHO05D004290 3.1e-22 109.8 70 84.3
Actinidia06797 Actinidia chinensis HOM05D003590 ORTHO05D004290 2.7e-18 96.7 76 75.0
EL10Ac4g08485 Beta vulgaris HOM05D003590 ORTHO05D004290 5.6e-16 89.0 60 73.3
EL10Ac4g08487 Beta vulgaris HOM05D003590 ORTHO05D004290 5.6e-16 89.0 60 73.3
Ca_29066_v3 Cicer arietinum L. HOM05D003590 ORTHO05D147848 1.1e-14 84.7 174 28.7
arahy.Tifrunner.gnm1.ann1.Z3LWFH Arachis hypogaea HOM05D000145 ORTHO05D000115 1.8e-14 84.0 66 74.2
CANSAT11G1461 Cannabis sativa HOM05D003590 ORTHO05D004290 8.4e-12 75.1 144 42.4
FvH4_1g24800 Fragaria vesca HOM05D003590 ORTHO05D004290 3.9e-09 66.2 88 50.0


User provided reference genes

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