Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 0.0e+00 1175.6 620 100.0
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 2.6e-291 1005.0 620 81.9
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 1.2e-277 959.5 623 78.0
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.3e-274 949.5 622 77.7
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 3.1e-265 918.3 613 75.4
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 5.9e-264 914.1 573 81.8
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 2.9e-263 911.8 615 74.5
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 3.8e-263 911.4 621 73.9
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 7.2e-262 907.1 623 75.1
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 1.2e-259 899.8 572 80.4
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 7.8e-256 887.1 620 76.5
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 7.8e-256 887.1 617 73.1
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 8.6e-255 883.6 620 72.3
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 2.5e-254 882.1 619 71.4
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 2.1e-253 879.0 629 72.0
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 2.8e-253 878.6 629 71.9
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 1.5e-251 872.8 620 72.3
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 6.4e-250 867.5 617 72.4
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 2.4e-249 865.5 596 78.7
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 5.4e-249 864.4 635 71.2
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 2.7e-248 862.1 628 70.4
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 1.7e-247 859.4 621 71.2
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 1.7e-247 859.4 618 70.6
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 2.5e-246 855.5 625 69.6
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 3.3e-246 855.1 621 69.2
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 5.6e-246 854.4 617 69.9
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 7.3e-246 854.0 625 70.1
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 9.5e-246 853.6 635 69.9
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 1.4e-244 849.7 621 69.1
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 2.9e-242 842.0 619 69.5
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 6.4e-242 840.9 619 69.5
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.6e-240 836.3 620 69.4
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 7.8e-240 833.9 620 70.0
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 3.0e-239 832.0 620 68.5
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 8.6e-239 830.5 619 69.1
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 8.6e-239 830.5 620 68.1
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 1.5e-238 829.7 621 69.4
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 4.3e-238 828.2 618 68.8
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 1.2e-237 826.6 618 67.0
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 8.9e-236 820.5 620 67.3
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 1.7e-234 816.2 620 67.4
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 1.7e-234 816.2 733 61.8
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 1.6e-232 809.7 622 65.8
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.9e-230 802.7 622 64.1
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 2.5e-230 802.4 618 66.3
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 7.3e-230 800.8 599 66.6
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 8.1e-229 797.3 619 65.1
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 4.0e-228 795.0 619 65.3
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 1.2e-227 793.5 625 65.6
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 4.4e-227 791.6 621 65.9
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 7.6e-227 790.8 624 63.1
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 2.2e-226 789.3 621 64.3
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 3.8e-226 788.5 626 64.4
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 8.4e-226 787.3 615 65.9
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 1.1e-225 786.9 624 62.7
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 2.4e-225 785.8 622 64.6
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 4.2e-225 785.0 622 64.6
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 9.3e-225 783.9 626 63.7
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 2.7e-224 782.3 626 67.1
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 7.8e-224 780.8 617 64.2
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 1.3e-223 780.0 637 62.6
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 1.3e-223 780.0 620 64.8
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 3.9e-223 778.5 619 63.8
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 3.9e-223 778.5 624 64.1
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 8.7e-223 777.3 669 59.0
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 1.9e-222 776.2 618 63.6
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 9.6e-222 773.9 626 64.1
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 9.6e-222 773.9 620 63.4
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 4.8e-221 771.5 620 63.2
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 1.8e-220 769.6 619 63.0
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 1.5e-219 766.5 663 61.1
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 3.4e-219 765.4 622 63.5
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 3.4e-219 765.4 620 62.4
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 4.4e-219 765.0 614 63.2
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 1.2e-216 756.9 603 63.0
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 1.2e-216 756.9 615 62.3
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 1.6e-216 756.5 624 60.4
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 2.1e-216 756.1 603 63.0
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 2.1e-216 756.1 617 63.4
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 2.7e-216 755.7 644 64.6
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 3.5e-216 755.4 624 66.3
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 1.1e-214 750.4 617 63.9
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 4.3e-214 748.4 618 61.7
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 9.6e-214 747.3 629 62.0
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 8.1e-213 744.2 606 62.9
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 2.6e-211 739.2 682 60.7
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 3.4e-211 738.8 673 58.8
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 4.2e-209 731.9 623 63.6
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 5.4e-209 731.5 631 62.8
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 2.5e-206 722.6 639 61.5
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 2.1e-205 719.5 623 64.2
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 2.1e-205 719.5 617 61.6
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 4.8e-205 718.4 619 62.8
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 8.1e-205 717.6 617 61.6
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 6.5e-202 708.0 734 52.6
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 2.5e-198 696.0 520 68.5
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 3.1e-196 689.1 627 56.8
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 6.9e-196 688.0 653 56.4
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 9.3e-193 677.6 623 61.2
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 4.5e-187 658.7 631 55.3
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 2.9e-186 656.0 620 59.5
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 8.5e-178 627.9 517 63.1
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 1.5e-171 607.1 597 52.9
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.1e-168 596.7 414 78.0
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 8.0e-168 594.7 598 51.0
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 1.4e-167 594.0 598 51.0
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 8.2e-165 584.7 652 53.5
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.2e-160 570.9 413 76.8
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.9e-155 552.0 414 74.2
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.2e-154 550.1 402 75.9
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.3e-151 540.0 413 72.9
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 2.2e-149 533.5 439 63.1
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.7e-147 526.6 414 72.2
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.9e-147 525.4 417 70.5
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.8e-136 490.0 411 67.9
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.9e-133 479.2 416 66.1
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.1e-129 468.0 446 56.3
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 7.8e-123 445.3 385 59.0
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 5.6e-121 439.1 445 52.6
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 3.7e-117 426.4 324 62.3
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 1.6e-115 421.0 337 62.3
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 9.3e-84 315.5 561 33.3
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 9.6e-81 305.4 550 33.3
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.2e-75 288.5 521 36.3
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 1.5e-73 281.6 205 67.8
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 3.3e-73 280.4 259 57.9
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 2.2e-69 267.7 208 68.3
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 3.0e-66 257.3 237 59.1
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 2.2e-64 251.1 517 30.0
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.8e-64 250.8 237 57.8
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 2.2e-61 241.1 565 30.6
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 5.0e-61 240.0 422 37.2
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 3.2e-52 210.7 167 63.5
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 2.7e-51 207.6 524 26.5
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.5e-49 201.8 135 77.8
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 7.7e-38 162.9 308 39.3
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 1.6e-35 155.2 109 69.7
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 2.3e-34 151.4 98 72.4
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 9.8e-33 146.0 100 70.0
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 5.4e-31 140.2 236 39.0
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 2.3e-29 134.8 103 66.0
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 3.3e-28 131.0 89 69.7
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 1.5e-20 105.5 169 40.8
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 1.5e-17 95.5 106 47.2
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 2.4e-15 88.2 45 86.7
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 2.4e-15 88.2 45 86.7
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 3.5e-14 84.3 48 83.3
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 5.6e-12 77.0 68 48.5
Nn4g24499 Nelumbo nucifera HOM05D000723 ORTHO05D278618 2.1e-11 75.1 96 44.8
C07p19370 Brassica napus HOM05D004724 ORTHO05D005734 6.2e-11 73.6 85 41.2
A07p12930 Brassica napus HOM05D004724 ORTHO05D005734 4.0e-10 70.9 51 58.8
BraA07t29066Z Brassica rapa HOM05D004724 ORTHO05D005734 4.0e-10 70.9 51 58.8
Gohir.D12G165066 Gossypium hirsutum HOM05D004724 ORTHO05D005734 6.8e-10 70.1 55 58.2
BcaC06g35143 Brassica carinata HOM05D004724 ORTHO05D005734 1.7e-08 65.5 51 54.9
BolC7t42456H Brassica oleracea HOM05D004724 ORTHO05D005734 1.7e-08 65.5 51 54.9
CDE07G0543 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 7.1e-07 60.1 80 42.5
Nn2g14491 Nelumbo nucifera HOM05D004783 ORTHO05D005581 1.6e-06 58.9 441 21.1


User provided reference genes

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