Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 4.0e-125 451.4 225 100.0
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.0e-109 400.2 202 98.0
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 2.7e-89 332.4 202 80.2
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 1.7e-88 329.7 202 79.7
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 3.9e-88 328.6 202 80.7
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 5.6e-87 324.7 201 79.6
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 6.8e-85 317.8 202 79.2
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 2.0e-84 316.2 202 76.2
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 5.8e-84 314.7 202 74.8
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 7.5e-84 314.3 202 76.2
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 3.7e-83 312.0 202 75.2
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 8.3e-83 310.8 205 74.6
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.1e-82 310.5 202 77.2
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 1.1e-82 310.5 202 75.7
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 1.1e-82 310.5 207 72.5
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 1.4e-82 310.1 202 75.7
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 3.2e-82 308.9 213 73.2
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 3.2e-82 308.9 202 75.2
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 2.7e-81 305.8 202 75.7
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 2.7e-81 305.8 202 72.8
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 3.5e-81 305.4 202 75.7
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 4.6e-81 305.1 201 76.6
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 4.6e-81 305.1 200 76.5
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 6.0e-81 304.7 203 71.4
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 6.0e-81 304.7 236 66.1
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 7.8e-81 304.3 202 74.3
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 7.8e-81 304.3 202 75.7
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 1.0e-80 303.9 205 72.7
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 1.3e-80 303.5 200 75.0
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 1.3e-80 303.5 202 73.3
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 1.3e-80 303.5 202 72.3
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.3e-80 302.8 202 71.3
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 3.0e-80 302.4 203 75.4
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 3.9e-80 302.0 202 71.8
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 3.9e-80 302.0 202 73.8
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 5.1e-80 301.6 202 71.3
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 6.6e-80 301.2 200 76.5
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 6.6e-80 301.2 202 71.3
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.5e-79 300.1 202 72.8
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 1.9e-79 299.7 202 70.3
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 2.5e-79 299.3 202 70.8
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 3.3e-79 298.9 204 73.5
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 4.3e-79 298.5 202 68.8
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 5.6e-79 298.1 202 70.8
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 7.3e-79 297.7 202 69.8
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 7.3e-79 297.7 202 71.8
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 9.5e-79 297.4 202 70.3
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 9.5e-79 297.4 202 69.8
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 1.2e-78 297.0 202 70.3
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 3.6e-78 295.4 204 72.1
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 1.4e-77 293.5 202 68.3
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 1.8e-77 293.1 201 69.2
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 1.8e-77 293.1 204 72.5
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 1.8e-77 293.1 202 72.3
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 1.8e-77 293.1 201 71.6
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 3.1e-77 292.4 207 69.1
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 4.0e-77 292.0 205 67.8
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 6.8e-77 291.2 201 68.7
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 6.8e-77 291.2 201 69.2
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 8.9e-77 290.8 202 68.3
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 2.6e-76 289.3 201 71.1
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 3.4e-76 288.9 202 69.3
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 3.4e-76 288.9 204 69.1
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 3.4e-76 288.9 204 69.1
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 4.4e-76 288.5 202 67.8
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 7.6e-76 287.7 204 69.1
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 1.7e-75 286.6 203 70.4
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 1.7e-75 286.6 222 65.8
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.2e-75 286.2 204 68.1
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 3.7e-75 285.4 205 67.8
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 4.9e-75 285.0 205 68.3
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 6.4e-75 284.6 202 68.3
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 8.4e-75 284.3 205 67.3
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 1.1e-74 283.9 202 68.3
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 1.1e-74 283.9 206 66.0
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.4e-74 283.5 200 69.5
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 1.9e-74 283.1 205 68.3
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 1.9e-74 283.1 210 67.6
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 4.1e-74 282.0 201 68.7
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 5.4e-74 281.6 202 69.3
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 7.1e-74 281.2 202 68.8
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 1.2e-73 280.4 202 67.3
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 2.1e-73 279.6 202 66.3
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 2.1e-73 279.6 202 67.3
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 2.1e-73 279.6 210 66.7
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 2.7e-73 279.3 205 65.9
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 3.5e-73 278.9 202 66.8
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 7.8e-73 277.7 205 65.4
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 2.3e-72 276.2 201 64.7
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 3.9e-72 275.4 200 65.5
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 6.6e-72 274.6 201 65.2
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 6.6e-72 274.6 202 65.8
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 1.5e-71 273.5 201 64.2
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 1.9e-71 273.1 202 64.4
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 2.5e-71 272.7 202 64.4
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 2.5e-71 272.7 202 64.9
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 3.3e-71 272.3 202 63.4
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 3.3e-71 272.3 205 64.4
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 4.3e-71 271.9 206 66.0
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 7.3e-71 271.2 201 63.7
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 1.1e-69 267.3 202 61.9
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 4.0e-69 265.4 202 61.4
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 4.0e-69 265.4 202 61.4
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 4.0e-69 265.4 202 61.9
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 4.0e-69 265.4 202 61.9
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 6.8e-69 264.6 202 61.4
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 6.8e-69 264.6 202 64.9
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 8.9e-69 264.2 202 60.4
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 2.0e-68 263.1 202 61.4
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 9.9e-68 260.8 242 61.2
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 7.8e-65 251.1 199 62.8
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 3.9e-64 248.8 180 65.6
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 1.1e-63 247.3 158 76.6
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 1.3e-62 243.8 206 60.2
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 6.2e-62 241.5 201 62.2
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.1e-61 240.7 202 63.4
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 5.8e-60 235.0 145 80.7
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 2.2e-59 233.0 150 75.3
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.9e-59 232.6 203 60.1
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 2.9e-59 232.6 201 56.7
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 6.0e-57 224.9 202 57.4
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 7.9e-57 224.6 201 54.2
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 7.9e-57 224.6 254 50.4
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 6.6e-56 221.5 174 63.2
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 1.2e-52 210.7 197 53.8
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 2.6e-52 209.5 153 69.9
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.2e-50 202.6 202 52.5
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 1.5e-47 193.7 196 50.0
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 9.6e-47 191.0 208 51.9
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 5.1e-40 168.7 205 42.4
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 4.8e-38 162.2 100 75.0
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 1.3e-30 137.5 75 85.3
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 6.9e-29 131.7 87 77.0
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 6.9e-29 131.7 126 55.6
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 7.7e-20 101.7 66 72.7
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 7.7e-20 101.7 66 72.7
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 5.5e-18 95.5 56 82.1
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 6.3e-14 82.0 82 46.3
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 5.0e-11 72.4 57 59.6
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 1.9e-10 70.5 69 58.0
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 4.4e-07 59.3 72 45.8


User provided reference genes

Program Settings