Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 0.0e+00 3420.6 1749 100.0
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 0.0e+00 2329.7 1775 70.8
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 0.0e+00 2163.7 1792 66.4
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 0.0e+00 2081.6 1772 65.4
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 0.0e+00 2042.3 2087 56.9
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 0.0e+00 1468.8 1821 49.1
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 0.0e+00 1467.6 1724 50.5
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 0.0e+00 1444.9 1802 48.2
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 0.0e+00 1431.8 1741 50.7
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 0.0e+00 1362.1 1796 46.7
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 0.0e+00 1355.9 1815 46.1
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 0.0e+00 1352.8 1764 46.7
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 0.0e+00 1350.9 1798 46.5
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 0.0e+00 1318.9 1383 54.3
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 0.0e+00 1317.0 1682 47.9
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 0.0e+00 1307.0 1796 45.6
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 0.0e+00 1297.7 1774 45.9
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 0.0e+00 1296.6 1590 48.6
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 0.0e+00 1282.3 1786 44.3
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 0.0e+00 1269.2 1786 44.6
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 0.0e+00 1268.4 1862 43.6
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 0.0e+00 1265.4 1786 44.7
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 0.0e+00 1263.1 1745 45.4
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 0.0e+00 1262.3 1749 45.3
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 0.0e+00 1255.4 1754 45.3
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 0.0e+00 1250.0 1789 44.2
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 0.0e+00 1245.3 1768 44.9
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 0.0e+00 1224.9 1761 44.1
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 0.0e+00 1224.5 1793 44.5
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 0.0e+00 1218.4 1793 44.6
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1217.6 1799 43.6
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 0.0e+00 1214.1 1787 44.4
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1210.3 1790 43.5
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1204.9 1799 43.4
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 0.0e+00 1204.5 1873 43.5
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1203.3 1807 43.3
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 0.0e+00 1203.0 1769 44.0
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 0.0e+00 1196.4 1792 43.6
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 0.0e+00 1170.2 1768 42.5
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 0.0e+00 1146.7 1394 48.1
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 0.0e+00 1122.8 1785 41.2
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 0.0e+00 1102.0 1923 40.2
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 0.0e+00 1082.0 1781 40.9
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 0.0e+00 1081.2 1789 40.7
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 1.2e-311 1073.5 1795 40.3
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 2.1e-306 1056.6 1808 39.8
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 2.3e-305 1053.1 1276 48.0
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 8.8e-305 1051.2 1802 39.7
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 2.2e-303 1046.6 1814 39.9
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 6.3e-303 1045.0 1792 39.7
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 6.9e-302 1041.6 1797 39.0
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 1.0e-300 1037.7 1789 40.0
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 1.9e-299 1033.5 1801 39.5
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 2.1e-298 1030.0 1785 39.6
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 5.2e-297 1025.4 1777 38.7
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 5.2e-297 1025.4 1777 38.7
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 5.7e-296 1021.9 1786 39.9
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 1.1e-294 1017.7 1813 39.4
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 4.7e-290 1002.3 1247 47.3
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 4.8e-287 992.3 1780 39.4
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.1e-286 991.1 1770 39.0
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 1.8e-286 990.3 1847 38.1
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 5.5e-283 978.8 1761 39.8
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 7.2e-283 978.4 1840 37.7
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 1.6e-282 977.2 1770 39.8
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 1.6e-282 977.2 1796 38.9
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 4.7e-282 975.7 1731 39.6
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 4.4e-280 969.1 1803 38.2
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 4.8e-279 965.7 1250 45.1
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 3.5e-277 959.5 1255 45.1
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 6.3e-271 938.7 1759 38.3
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 9.2e-262 908.3 1305 42.1
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 4.7e-258 896.0 1524 41.3
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 1.2e-245 854.7 1363 43.6
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 8.9e-233 812.0 1762 34.7
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 1.2e-232 811.6 1763 36.0
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 5.4e-230 802.7 1754 35.1
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 6.0e-229 799.3 1751 34.8
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 2.5e-227 793.9 1774 35.5
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 5.6e-227 792.7 1761 35.4
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 7.3e-227 792.3 1772 35.5
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 2.1e-226 790.8 712 56.6
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 1.2e-224 785.0 1766 34.1
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 3.4e-224 783.5 1776 35.2
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 2.2e-223 780.8 1776 35.0
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 1.9e-222 777.7 1747 34.7
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 2.1e-221 774.2 807 51.5
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 4.3e-219 766.5 909 45.8
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 1.3e-204 718.4 637 58.1
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 4.8e-202 709.9 689 53.1
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 3.6e-197 693.7 1859 31.7
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.1e-193 682.2 748 48.3
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 6.9e-185 652.9 1799 31.9
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 1.1e-179 635.6 1258 35.7
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 8.8e-172 609.4 1704 31.2
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 1.4e-156 558.9 1123 37.8
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 2.4e-137 495.0 902 34.6
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 7.0e-137 493.4 1039 36.3
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 2.4e-129 468.4 844 41.5
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.8e-124 452.2 436 54.1
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 1.5e-110 406.0 665 42.4
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 4.9e-106 391.0 645 38.6
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 3.9e-95 354.8 1246 30.9
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 1.5e-86 326.2 892 28.8
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 3.8e-82 311.6 603 38.3
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 3.2e-81 308.5 458 38.2
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 6.7e-79 300.8 537 33.3
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 6.3e-69 267.7 841 27.2
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 8.0e-64 250.8 847 28.0
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 7.0e-60 237.7 708 31.6
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 4.5e-59 235.0 680 33.4
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 5.5e-49 201.4 1256 24.1
Lalb_Chr04g0257831 Lupinus albus HOM05D006083 ORTHO05D007634 1.5e-41 176.8 426 36.2
Oeu023787.1 Olea europaea HOM05D006083 ORTHO05D007634 2.5e-41 176.0 352 40.1
Lalb_Chr10g0091761 Lupinus albus HOM05D006083 ORTHO05D007634 2.3e-34 152.9 434 33.9
Glyma.02G093802 Glycine max HOM05D006083 ORTHO05D007634 8.6e-34 151.0 138 48.6
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.2e-30 140.6 126 53.2
Cpa.g.sc1.376 Carica papaya HOM05D006083 ORTHO05D007634 2.4e-28 132.9 462 29.2
TPR.G40211 Trifolium pratense HOM05D006083 ORTHO05D007634 4.6e-19 102.1 343 33.2
RcHm_v2.0_Chr3g0492191 Rosa chinensis HOM05D006083 ORTHO05D007634 1.3e-18 100.5 224 38.8
Sc06g0002670 Simmondsia chinensis HOM05D006083 ORTHO05D007634 3.0e-18 99.4 457 29.3
HPP92_018997 Vanilla planifolia HOM05D006083 ORTHO05D007634 6.6e-18 98.2 700 24.9
ATR0618G162 Amborella trichopoda HOM05D006083 ORTHO05D007634 2.1e-16 93.2 93 50.5
Lsat_1_v5_gn_7_4020 Lactuca sativa HOM05D006083 ORTHO05D007634 5.2e-15 88.6 59 78.0
AagrBONN_evm.TU.Sc2ySwM_228.2798 Anthoceros agrestis HOM05D006083 ORTHO05D007634 1.7e-13 83.6 303 29.7
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 1.1e-12 80.9 147 34.7
Ca_29897_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.2e-08 67.4 79 45.6


User provided reference genes

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