Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008517 Camellia sinensis var. sinensis HOM05D006241 ORTHO05D007842 1.5e-41 172.2 74 100.0
Nn5g30908 Nelumbo nucifera HOM05D006241 ORTHO05D007842 4.3e-36 154.1 74 87.8
Duzib116G0823 Durio zibethinus HOM05D006241 ORTHO05D007842 2.6e-33 144.8 74 85.1
Gorai.009G189100 Gossypium raimondii HOM05D006241 ORTHO05D007842 4.4e-33 144.1 74 85.1
Dinv39579 Davidia involucrata HOM05D006241 ORTHO05D007842 5.8e-33 143.7 65 89.2
FvH4_2g37630 Fragaria vesca HOM05D006241 ORTHO05D007842 7.6e-33 143.3 74 82.4
Thecc.08G056300 Theobroma cacao HOM05D006241 ORTHO05D007842 7.6e-33 143.3 74 83.8
Duzib093G0667 Durio zibethinus HOM05D006241 ORTHO05D007842 1.3e-32 142.5 74 83.8
Dinv31923 Davidia involucrata HOM05D006241 ORTHO05D007842 1.7e-32 142.1 63 90.5
Gohir.D05G183800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 1.7e-32 142.1 74 83.8
Gohir.A01G107600 Gossypium hirsutum HOM05D006241 ORTHO05D007842 2.2e-32 141.7 74 82.4
COL.COLO4_21601 Corchorus olitorius HOM05D006241 ORTHO05D007842 2.9e-32 141.4 67 91.0
TAR381G1678 Trochodendron aralioides HOM05D006241 ORTHO05D007842 2.9e-32 141.4 67 88.1
Gohir.D01G094000 Gossypium hirsutum HOM05D006241 ORTHO05D007842 3.8e-32 141.0 74 82.4
Gorai.002G119300 Gossypium raimondii HOM05D006241 ORTHO05D007842 3.8e-32 141.0 74 82.4
Gohir.A05G180800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 6.4e-32 140.2 74 82.4
THA.LOC104811457 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 6.4e-32 140.2 68 86.8
THA.LOC109116669 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 6.4e-32 140.2 68 85.3
FAN15G0812 Fragaria x ananassa HOM05D006241 ORTHO05D007842 1.4e-31 139.0 74 83.8
TAR376G1175 Trochodendron aralioides HOM05D006241 ORTHO05D007842 1.4e-31 139.0 63 88.9
Cpa.g.sc222.6 Carica papaya HOM05D006241 ORTHO05D007842 1.9e-31 138.7 73 80.8
Cc10_g00830 Coffea canephora HOM05D006241 ORTHO05D007842 2.4e-31 138.3 73 78.1
Aa31LG4G6300 Aethionema arabicum HOM05D006241 ORTHO05D007842 4.2e-31 137.5 68 85.3
Atru.chr13.161 Acer truncatum HOM05D006241 ORTHO05D007842 5.4e-31 137.1 70 82.9
Lj3g0010530 Lotus japonicus HOM05D006241 ORTHO05D007842 5.4e-31 137.1 69 85.5
Manes.05G136000 Manihot esculenta HOM05D006241 ORTHO05D007842 5.4e-31 137.1 64 89.1
Actinidia15484 Actinidia chinensis HOM05D006241 ORTHO05D007842 7.1e-31 136.7 71 80.3
CiPaw.07G140100 Carya illinoinensis HOM05D006241 ORTHO05D007842 7.1e-31 136.7 69 85.5
CiPaw.08G071900 Carya illinoinensis HOM05D006241 ORTHO05D007842 1.2e-30 136.0 74 79.7
PGR031G1817 Punica granatum HOM05D006241 ORTHO05D007842 1.2e-30 136.0 77 80.5
Actinidia17033 Actinidia chinensis HOM05D006241 ORTHO05D007842 1.6e-30 135.6 71 80.3
Ca_19011_v3 Cicer arietinum L. HOM05D006241 ORTHO05D007842 1.6e-30 135.6 69 82.6
Lalb_Chr17g0337811 Lupinus albus HOM05D006241 ORTHO05D007842 1.6e-30 135.6 69 82.6
Manes.18G006720 Manihot esculenta HOM05D006241 ORTHO05D007842 1.6e-30 135.6 64 85.9
Prupe.1G355800 Prunus persica HOM05D006241 ORTHO05D007842 1.6e-30 135.6 68 85.3
Duzib041G0756 Durio zibethinus HOM05D006241 ORTHO05D007842 2.1e-30 135.2 74 78.4
Glyma.11G099500 Glycine max HOM05D006241 ORTHO05D007842 2.1e-30 135.2 70 84.3
PSO170G5266 Papaver somniferum HOM05D006241 ORTHO05D007842 4.6e-30 134.0 79 73.4
QL02p013848 Quercus lobata HOM05D006241 ORTHO05D007842 4.6e-30 134.0 73 76.7
Psat7g177480 Pisum sativum HOM05D006241 ORTHO05D007842 7.8e-30 133.3 69 82.6
Lalb_Chr10g0094931 Lupinus albus HOM05D006241 ORTHO05D007842 1.0e-29 132.9 70 81.4
arahy.Tifrunner.gnm1.ann1.1F1YZI Arachis hypogaea HOM05D006241 ORTHO05D007842 1.3e-29 132.5 68 80.9
arahy.Tifrunner.gnm1.ann1.1NSU2H Arachis hypogaea HOM05D006241 ORTHO05D007842 1.3e-29 132.5 68 80.9
arahy.Tifrunner.gnm1.ann1.4R2MNP Arachis hypogaea HOM05D006241 ORTHO05D007842 1.3e-29 132.5 68 80.9
arahy.Tifrunner.gnm1.ann1.L8CN1K Arachis hypogaea HOM05D006241 ORTHO05D007842 1.3e-29 132.5 68 80.9
MELO3C017010.2 Cucumis melo HOM05D006241 ORTHO05D007842 1.3e-29 132.5 71 80.3
PSO357G0248 Papaver somniferum HOM05D006241 ORTHO05D007842 1.7e-29 132.1 79 72.2
Glyma.12G025500 Glycine max HOM05D006241 ORTHO05D007842 2.3e-29 131.7 65 84.6
CARHR069760 Cardamine hirsuta HOM05D006241 ORTHO05D007842 3.0e-29 131.3 68 79.4
Phvul.011G027800 Phaseolus vulgaris HOM05D006241 ORTHO05D007842 3.9e-29 131.0 65 84.6
AL2G36270 Arabidopsis lyrata HOM05D006241 ORTHO05D007842 5.1e-29 130.6 67 80.6
AT1G76200 Arabidopsis thaliana HOM05D006241 ORTHO05D007842 5.1e-29 130.6 67 80.6
Eucgr.F01733 Eucalyptus grandis HOM05D006241 ORTHO05D007842 5.1e-29 130.6 65 86.2
CDE05G1511 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 8.7e-29 129.8 75 74.7
PGSC0003DMG400009898 Solanum tuberosum HOM05D006241 ORTHO05D007842 2.5e-28 128.3 64 79.7
CAN.G311.105 Capsicum annuum HOM05D006241 ORTHO05D007842 3.3e-28 127.9 64 79.7
CDE05G0950 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 4.3e-28 127.5 64 79.7
CsaV3_4G037120 Cucumis sativus L. HOM05D006241 ORTHO05D007842 4.3e-28 127.5 67 80.6
Potri.005G248600 Populus trichocarpa HOM05D006241 ORTHO05D007842 4.3e-28 127.5 66 80.3
Migut.N03197 Erythranthe guttata HOM05D006241 ORTHO05D007842 5.6e-28 127.1 61 86.9
Cfa014051 Carpinus fangiana HOM05D006241 ORTHO05D007842 7.3e-28 126.7 67 80.6
Sabra05G0192000 Salix brachista HOM05D006241 ORTHO05D007842 7.3e-28 126.7 66 80.3
Ciclev10010113m.g Citrus clementina HOM05D006241 ORTHO05D007842 9.6e-28 126.3 70 77.1
Potri.002G012700 Populus trichocarpa HOM05D006241 ORTHO05D007842 9.6e-28 126.3 66 80.3
SGA_v2.0_scaffold25G11191 Striga asiatica HOM05D006241 ORTHO05D007842 9.6e-28 126.3 65 83.1
TWI56G0163 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 9.6e-28 126.3 67 83.6
CANSAT54G0965 Cannabis sativa HOM05D006241 ORTHO05D007842 1.3e-27 125.9 71 77.5
Aqoxy6G01804 Aquilegia oxysepala HOM05D006241 ORTHO05D007842 2.1e-27 125.2 63 84.1
Carub.0002s2310 Capsella rubella HOM05D006241 ORTHO05D007842 2.1e-27 125.2 68 76.5
Sp5g31350 Schrenkiella parvula HOM05D006241 ORTHO05D007842 2.1e-27 125.2 68 76.5
TWI12G0416 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 2.1e-27 125.2 67 82.1
Thhalv10019410m.g Eutrema salsugineum HOM05D006241 ORTHO05D007842 3.6e-27 124.4 68 79.4
ATR0661G361 Amborella trichopoda HOM05D006241 ORTHO05D007842 8.1e-27 123.2 68 75.0
BcaB02g07055 Brassica carinata HOM05D006241 ORTHO05D007842 8.1e-27 123.2 74 73.0
BcaC08g47119 Brassica carinata HOM05D006241 ORTHO05D007842 1.1e-26 122.9 68 75.0
BcaC08g47281 Brassica carinata HOM05D006241 ORTHO05D007842 1.1e-26 122.9 68 75.0
A07p41770 Brassica napus HOM05D006241 ORTHO05D007842 1.1e-26 122.9 68 75.0
C06p50150 Brassica napus HOM05D006241 ORTHO05D007842 1.1e-26 122.9 68 75.0
BolC6t40055H Brassica oleracea HOM05D006241 ORTHO05D007842 1.1e-26 122.9 68 75.0
BcaC08g47115 Brassica carinata HOM05D006241 ORTHO05D007842 2.4e-26 121.7 68 73.5
A07p28590 Brassica napus HOM05D006241 ORTHO05D007842 6.9e-26 120.2 68 73.5
BraA07t31707Z Brassica rapa HOM05D006241 ORTHO05D007842 6.9e-26 120.2 68 73.5
BraA07t30500Z Brassica rapa HOM05D006241 ORTHO05D007842 3.4e-25 117.9 69 72.5
Lsat_1_v5_gn_8_133721 Lactuca sativa HOM05D006241 ORTHO05D007842 3.4e-25 117.9 70 77.1
BcaC08g45539 Brassica carinata HOM05D006241 ORTHO05D007842 1.3e-24 115.9 64 71.9
C06p32170 Brassica napus HOM05D006241 ORTHO05D007842 1.3e-24 115.9 64 71.9
BolC6t38340H Brassica oleracea HOM05D006241 ORTHO05D007842 1.3e-24 115.9 64 71.9
GSVIVG01008691001 Vitis vinifera HOM05D006241 ORTHO05D007842 1.3e-24 115.9 50 86.0
BcaB05g24973 Brassica carinata HOM05D006241 ORTHO05D007842 2.9e-24 114.8 65 72.3
AagrBONN_evm.TU.Sc2ySwM_117.850 Anthoceros agrestis HOM05D006241 ORTHO05D007842 4.9e-24 114.0 62 71.0
ECA248G1104 Erigeron canadensis HOM05D006241 ORTHO05D007842 6.4e-24 113.6 69 76.8
BraA02t07081Z Brassica rapa HOM05D006241 ORTHO05D007842 2.4e-23 111.7 65 70.8
Pp3c21_21340 Physcomitrium patens HOM05D006241 ORTHO05D007842 5.4e-23 110.5 72 68.1
Os05g0122900 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 9.3e-23 109.8 64 73.4
MBI19_g43741_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 3.5e-22 107.8 48 91.7
Pp3c18_1920 Physcomitrium patens HOM05D006241 ORTHO05D007842 1.3e-21 105.9 72 65.3
Zm00001eb294120 Zea mays HOM05D006241 ORTHO05D007842 2.3e-21 105.1 64 70.3
Zm00001eb356460 Zea mays HOM05D006241 ORTHO05D007842 2.3e-21 105.1 64 70.3
MD08G1003800 Malus domestica HOM05D006241 ORTHO05D007842 4.3e-20 100.9 54 81.5
Nitab4.5_0000588g0230 Nicotiana tabacum HOM05D006241 ORTHO05D007842 5.6e-20 100.5 54 77.8
VMungo1127G1075 Vigna mungo HOM05D006241 ORTHO05D007842 7.3e-20 100.1 52 80.8
MD15G1003400 Malus domestica HOM05D006241 ORTHO05D007842 1.6e-19 99.0 53 81.1
FAN20G1861 Fragaria x ananassa HOM05D006241 ORTHO05D007842 2.1e-19 98.6 53 84.9
RcHm_v2.0_Chr6g0304101 Rosa chinensis HOM05D006241 ORTHO05D007842 4.8e-19 97.4 53 83.0
Os06g0725400 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 8.1e-19 96.7 65 67.7
Hund08526 Selenicereus undatus HOM05D006241 ORTHO05D007842 8.1e-19 96.7 55 80.0
HanXRQChr17g0554651 Helianthus annuus HOM05D006241 ORTHO05D007842 3.1e-18 94.7 54 79.6
HanXRQChr17g0555751 Helianthus annuus HOM05D006241 ORTHO05D007842 4.0e-18 94.4 54 79.6
Mapoly0103s0030 Marchantia polymorpha HOM05D006241 ORTHO05D007842 1.2e-17 92.8 63 58.7
HPP92_021050 Vanilla planifolia HOM05D006241 ORTHO05D007842 1.2e-17 92.8 54 74.1
Mapoly0108s0047 Marchantia polymorpha HOM05D006241 ORTHO05D007842 2.6e-17 91.7 66 57.6
Nn6g31777 Nelumbo nucifera HOM05D006241 ORTHO05D007842 7.1e-15 83.6 41 80.5
BolC2t09367H Brassica oleracea HOM05D006241 ORTHO05D007842 2.7e-14 81.6 53 66.0
SalBow6G4847 Salvia bowleyana HOM05D006241 ORTHO05D007842 2.7e-14 81.6 53 73.6
MBI19_g35281_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 5.1e-13 77.4 33 90.9
AUR62015196 Chenopodium quinoa HOM05D006241 ORTHO05D007842 2.8e-11 71.6 38 78.9
AUR62017658 Chenopodium quinoa HOM05D006241 ORTHO05D007842 2.8e-11 71.6 38 78.9
Ah.01g013010 Amaranthus hybridus HOM05D006241 ORTHO05D007842 4.8e-11 70.9 38 78.9
vmacro04395 Vaccinium macrocarpon HOM05D006241 ORTHO05D007842 2.4e-10 68.6 35 80.0
DCAR_013903 Daucus carota HOM05D006241 ORTHO05D007842 3.1e-10 68.2 54 61.1
Medtr4g075160 Medicago truncatula HOM05D006241 ORTHO05D007842 3.1e-10 68.2 38 73.7
Sabra07G0051400 Salix brachista HOM05D006241 ORTHO05D349851 4.0e-10 67.8 54 59.3
Ah.01g001690 Amaranthus hybridus HOM05D006241 ORTHO05D007842 2.6e-09 65.1 38 71.1
DCAR_016755 Daucus carota HOM05D006241 ORTHO05D007842 2.6e-09 65.1 32 78.1
ClCG05G015200 Citrullus lanatus HOM05D006241 ORTHO05D007842 5.8e-09 63.9 35 74.3
Sed0002381 Sechium edule HOM05D006241 ORTHO05D007842 1.3e-08 62.8 35 71.4
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 8.4e-08 60.1 32 75.0


User provided reference genes

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