Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 3.7e-230 801.2 409 100.0
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 1.6e-172 609.8 413 77.2
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 3.0e-171 605.5 410 75.9
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 3.0e-171 605.5 414 76.1
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 1.5e-167 593.2 409 76.3
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 6.0e-164 581.3 407 73.7
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 1.3e-158 563.5 413 73.4
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 4.2e-157 558.5 395 72.7
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 5.4e-157 558.1 411 71.8
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 1.2e-156 557.0 439 67.7
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 7.9e-156 554.3 410 70.7
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 1.0e-155 553.9 413 70.7
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 1.8e-155 553.1 323 89.5
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 3.9e-155 552.0 439 66.5
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 4.3e-154 548.5 398 70.9
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 2.1e-153 546.2 375 74.9
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 2.1e-153 546.2 417 69.3
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 6.2e-153 544.7 401 71.6
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 1.8e-152 543.1 377 73.7
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 2.4e-152 542.7 377 73.7
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 9.0e-152 540.8 377 74.3
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 9.0e-152 540.8 373 74.0
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 1.5e-151 540.0 409 70.2
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 7.6e-151 537.7 416 69.7
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 7.6e-151 537.7 408 69.6
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 4.9e-150 535.0 408 69.6
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 8.4e-150 534.3 412 68.2
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 1.1e-149 533.9 411 69.8
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 4.2e-149 531.9 404 68.6
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 5.5e-149 531.6 409 69.7
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 3.3e-146 522.3 410 65.9
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 3.3e-146 522.3 411 68.4
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 1.3e-145 520.4 418 68.2
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 4.8e-145 518.5 448 62.5
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 4.8e-145 518.5 439 64.0
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 8.2e-145 517.7 374 71.1
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 1.4e-144 516.9 377 71.9
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 1.8e-144 516.5 382 71.5
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 4.0e-144 515.4 373 71.6
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 2.6e-143 512.7 419 66.6
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 4.5e-143 511.9 373 70.2
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 5.8e-143 511.5 384 68.5
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 2.2e-142 509.6 398 68.1
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 4.9e-142 508.4 382 68.6
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 2.5e-141 506.1 415 66.5
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 9.3e-141 504.2 360 70.3
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 2.7e-140 502.7 287 84.0
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 2.7e-140 502.7 367 70.3
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 4.6e-140 501.9 368 70.1
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 1.8e-139 500.0 367 70.0
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 3.0e-139 499.2 378 68.5
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 6.7e-139 498.0 409 64.3
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 1.5e-138 496.9 412 63.1
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 4.3e-138 495.4 410 64.1
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 3.7e-137 492.3 373 67.6
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 6.3e-137 491.5 421 62.7
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 8.2e-137 491.1 374 67.6
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 1.1e-136 490.7 287 81.9
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 1.8e-136 490.0 375 67.5
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 4.1e-136 488.8 356 70.8
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 5.3e-136 488.4 358 68.4
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 9.0e-136 487.6 356 69.9
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 1.5e-135 486.9 367 68.1
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 1.7e-134 483.4 398 63.6
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 5.0e-134 481.9 287 78.7
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 1.1e-133 480.7 383 65.5
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 1.4e-133 480.3 374 66.6
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 1.4e-133 480.3 374 66.6
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 7.2e-133 478.0 401 62.8
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 1.2e-132 477.2 388 64.9
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 2.1e-132 476.5 373 66.0
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 2.1e-132 476.5 361 68.1
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 6.1e-132 474.9 391 64.2
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 7.9e-132 474.6 358 68.2
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.0e-131 474.2 395 63.8
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 3.0e-131 472.6 392 63.3
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 5.1e-131 471.9 390 63.3
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 2.0e-130 469.9 428 60.5
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 5.7e-130 468.4 389 62.7
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 6.3e-129 464.9 359 67.1
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 6.3e-129 464.9 366 65.0
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 8.2e-129 464.5 424 60.4
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 1.8e-128 463.4 341 68.6
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 6.9e-128 461.5 408 57.6
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 1.3e-126 457.2 403 60.8
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 3.8e-126 455.7 374 63.6
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 5.0e-126 455.3 419 58.9
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 8.5e-126 454.5 402 60.9
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 1.1e-125 454.1 427 58.3
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 5.5e-125 451.8 391 61.4
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 1.8e-123 446.8 399 60.7
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.1e-122 444.1 407 59.5
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 1.5e-122 443.7 387 62.0
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 5.7e-122 441.8 387 63.6
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 5.7e-122 441.8 387 61.2
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 9.7e-122 441.0 399 60.4
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 1.7e-121 440.3 388 61.3
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 2.2e-121 439.9 388 60.8
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 2.2e-121 439.9 392 61.0
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 3.7e-121 439.1 399 58.9
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 3.7e-121 439.1 397 60.2
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 6.3e-121 438.3 387 61.2
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 8.2e-121 438.0 395 61.8
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 1.1e-120 437.6 392 61.2
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 3.1e-120 436.0 403 56.8
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 5.3e-120 435.3 376 62.5
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 7.0e-120 434.9 382 61.0
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 1.2e-119 434.1 387 61.0
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 2.0e-119 433.3 287 75.6
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 2.9e-118 429.5 390 57.9
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 3.8e-118 429.1 380 61.8
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 3.8e-118 429.1 370 61.6
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 9.4e-117 424.5 377 61.0
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 2.3e-115 419.9 372 56.2
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 3.9e-115 419.1 506 48.2
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 6.7e-115 418.3 379 61.2
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 1.5e-114 417.2 343 63.3
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 3.3e-114 416.0 394 57.6
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 4.4e-114 415.6 290 63.8
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 4.4e-114 415.6 378 59.5
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 4.8e-113 412.1 398 58.5
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 1.7e-110 403.7 377 58.9
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 1.7e-110 403.7 377 58.9
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 6.5e-110 401.7 377 58.4
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 8.5e-110 401.4 376 58.8
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 3.2e-109 399.4 360 60.0
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 1.2e-108 397.5 391 57.3
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 1.2e-108 397.5 391 57.3
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 1.6e-108 397.1 391 56.8
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 1.6e-108 397.1 391 56.8
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 8.0e-108 394.8 381 55.1
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 2.3e-107 393.3 391 56.8
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 4.0e-107 392.5 374 58.0
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 1.5e-106 390.6 287 70.0
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 1.7e-102 377.1 358 57.8
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 3.4e-98 362.8 333 55.6
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 5.9e-95 352.1 425 46.1
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 6.8e-91 338.6 251 67.3
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 2.7e-79 300.1 209 72.2
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 1.8e-59 234.2 299 41.5
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 2.1e-55 220.7 171 64.3
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 2.5e-53 213.8 160 65.6
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 6.9e-51 205.7 401 35.9
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 1.1e-48 198.4 258 45.3
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 5.8e-42 176.0 275 44.7
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 1.1e-32 145.2 222 41.9
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 3.0e-30 137.1 108 69.4
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 1.4e-27 128.3 72 84.7
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 5.0e-25 119.8 173 43.9
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 2.4e-19 100.9 150 47.3
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 1.9e-16 91.3 279 27.2
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 1.1e-13 82.0 53 71.7
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 4.8e-12 76.6 113 45.1


User provided reference genes

Program Settings