Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008455 Camellia sinensis var. sinensis HOM05D006816 ORTHO05D008666 2.2e-298 1028.5 646 100.0
Dinv15216 Davidia involucrata HOM05D006816 ORTHO05D008666 1.4e-204 716.8 654 63.1
Lj3C1059T10 Lonicera japonica HOM05D006816 ORTHO05D008666 4.2e-204 715.3 539 71.2
TAR622G0126 Trochodendron aralioides HOM05D006816 ORTHO05D008666 7.4e-201 704.5 664 61.0
GSVIVG01000542001 Vitis vinifera HOM05D006816 ORTHO05D008666 2.1e-195 686.4 655 59.7
vmacro01121 Vaccinium macrocarpon HOM05D006816 ORTHO05D008666 4.5e-190 668.7 570 65.3
Ciclev10030964m.g Citrus clementina HOM05D006816 ORTHO05D008666 1.4e-186 657.1 547 64.9
Lsat_1_v5_gn_4_4020 Lactuca sativa HOM05D006816 ORTHO05D008666 2.3e-186 656.4 535 68.2
PGSC0003DMG400018598 Solanum tuberosum HOM05D006816 ORTHO05D008666 4.0e-186 655.6 535 64.5
HanXRQChr17g0569531 Helianthus annuus HOM05D006816 ORTHO05D008666 2.0e-185 653.3 540 65.2
FAN17G1412 Fragaria x ananassa HOM05D006816 ORTHO05D008666 6.3e-184 648.3 550 64.9
Sopen05g008580 Solanum pennellii HOM05D006816 ORTHO05D008666 1.1e-183 647.5 535 63.9
Solyc05g013670.3 Solanum lycopersicum HOM05D006816 ORTHO05D008666 7.0e-183 644.8 535 63.6
Gohir.D02G158100 Gossypium hirsutum HOM05D006816 ORTHO05D008666 9.1e-183 644.4 548 66.1
Gorai.005G177300 Gossypium raimondii HOM05D006816 ORTHO05D008666 9.1e-183 644.4 548 66.1
PGR119G0117 Punica granatum HOM05D006816 ORTHO05D008666 9.1e-183 644.4 562 69.6
Nitab4.5_0006963g0030 Nicotiana tabacum HOM05D006816 ORTHO05D008666 1.2e-182 644.0 534 65.0
ECA234G3219 Erigeron canadensis HOM05D006816 ORTHO05D008666 4.5e-182 642.1 532 64.7
Migut.K00611 Erythranthe guttata HOM05D006816 ORTHO05D008666 4.5e-182 642.1 530 64.7
Nn4g22582 Nelumbo nucifera HOM05D006816 ORTHO05D008666 1.0e-181 641.0 545 69.9
Eucgr.H02486 Eucalyptus grandis HOM05D006816 ORTHO05D008666 2.9e-181 639.4 564 63.5
FvH4_4g25720 Fragaria vesca HOM05D006816 ORTHO05D008666 6.5e-181 638.3 550 67.3
FAN22G0176 Fragaria x ananassa HOM05D006816 ORTHO05D008666 8.5e-181 637.9 549 64.1
Actinidia01356 Actinidia chinensis HOM05D006816 ORTHO05D008666 1.9e-180 636.7 571 63.4
TWI36G0164 Tripterygium wilfordii HOM05D006816 ORTHO05D008666 3.2e-180 636.0 539 63.8
Oeu057544.1 Olea europaea HOM05D006816 ORTHO05D008666 9.4e-180 634.4 542 63.1
Hund06034 Selenicereus undatus HOM05D006816 ORTHO05D008666 1.6e-179 633.6 532 62.6
Atru.chr11.2152 Acer truncatum HOM05D006816 ORTHO05D008666 3.6e-179 632.5 535 67.1
Gohir.A03G133700 Gossypium hirsutum HOM05D006816 ORTHO05D008666 4.7e-179 632.1 548 63.9
Haze_12261 Corylus avellana HOM05D006816 ORTHO05D008666 8.0e-179 631.3 649 58.2
QL03p057598 Quercus lobata HOM05D006816 ORTHO05D008666 2.3e-178 629.8 559 63.0
COL.COLO4_23463 Corchorus olitorius HOM05D006816 ORTHO05D008666 2.0e-177 626.7 567 63.5
AUR62024254 Chenopodium quinoa HOM05D006816 ORTHO05D008666 2.8e-176 622.9 570 59.8
FAN12G1622 Fragaria x ananassa HOM05D006816 ORTHO05D008666 3.7e-176 622.5 550 65.6
Sabra10G0021100 Salix brachista HOM05D006816 ORTHO05D008666 3.7e-176 622.5 551 67.5
MD13G1099700 Malus domestica HOM05D006816 ORTHO05D008666 4.9e-176 622.1 553 62.2
PSO063G6228 Papaver somniferum HOM05D006816 ORTHO05D008666 4.9e-176 622.1 546 63.9
PSO754G0080 Papaver somniferum HOM05D006816 ORTHO05D008666 1.6e-174 617.1 546 63.4
RcHm_v2.0_Chr4g0433151 Rosa chinensis HOM05D006816 ORTHO05D008666 1.6e-174 617.1 550 66.2
Ah.02g130220 Amaranthus hybridus HOM05D006816 ORTHO05D008666 1.0e-173 614.4 530 62.6
Cpa.g.sc33.36 Carica papaya HOM05D006816 ORTHO05D008666 6.6e-173 611.7 538 64.1
CANSAT01G2021 Cannabis sativa HOM05D006816 ORTHO05D008666 8.6e-173 611.3 542 65.9
SalBow2G0630 Salvia bowleyana HOM05D006816 ORTHO05D008666 4.7e-171 605.5 542 61.4
Peaxi162Scf00128g00318 Petunia axillaris HOM05D006816 ORTHO05D008666 9.8e-169 597.8 535 61.3
EL10Ac6g13857 Beta vulgaris HOM05D006816 ORTHO05D008666 6.4e-168 595.1 528 61.2
Cc11_g15850 Coffea canephora HOM05D006816 ORTHO05D008666 1.4e-167 594.0 538 62.3
Manes.13G022900 Manihot esculenta HOM05D006816 ORTHO05D008666 2.7e-166 589.7 547 60.0
Aqoxy5G03738 Aquilegia oxysepala HOM05D006816 ORTHO05D008666 5.9e-166 588.6 531 61.2
Lalb_Chr07g0185401 Lupinus albus HOM05D006816 ORTHO05D008666 7.8e-166 588.2 549 60.1
CsaV3_5G031010 Cucumis sativus L. HOM05D006816 ORTHO05D008666 1.0e-165 587.8 536 60.6
THA.LOC104825556 Tarenaya hassleriana HOM05D006816 ORTHO05D008666 2.5e-164 583.2 526 60.6
AL2G26590 Arabidopsis lyrata HOM05D006816 ORTHO05D008666 4.7e-163 578.9 537 59.6
Aa31sc755G30 Aethionema arabicum HOM05D006816 ORTHO05D008666 4.0e-162 575.9 537 60.3
Sed0004203 Sechium edule HOM05D006816 ORTHO05D008666 4.0e-162 575.9 536 59.7
Phvul.002G259600 Phaseolus vulgaris HOM05D006816 ORTHO05D008666 6.8e-162 575.1 540 59.4
MELO3C011940.2 Cucumis melo HOM05D006816 ORTHO05D008666 8.9e-162 574.7 549 59.6
Thhalv10018280m.g Eutrema salsugineum HOM05D006816 ORTHO05D008666 8.9e-162 574.7 545 58.9
Medtr8g089810 Medicago truncatula HOM05D006816 ORTHO05D008666 1.5e-161 573.9 549 58.1
AT1G67840 Arabidopsis thaliana HOM05D006816 ORTHO05D008666 4.4e-161 572.4 539 59.4
Glyma.05G174600 Glycine max HOM05D006816 ORTHO05D008666 5.8e-161 572.0 551 58.6
Carub.0002s1430 Capsella rubella HOM05D006816 ORTHO05D008666 1.3e-160 570.9 545 59.4
BcaB03g15378 Brassica carinata HOM05D006816 ORTHO05D008666 4.9e-160 568.9 543 59.7
Sp5g22850 Schrenkiella parvula HOM05D006816 ORTHO05D008666 8.3e-160 568.2 543 59.3
VMungo0251G0196 Vigna mungo HOM05D006816 ORTHO05D008666 8.3e-160 568.2 540 58.9
Lj4g0008868 Lotus japonicus HOM05D006816 ORTHO05D008666 1.1e-159 567.8 554 57.8
CARHR060480 Cardamine hirsuta HOM05D006816 ORTHO05D008666 3.2e-159 566.2 533 59.5
Ca_17778_v3 Cicer arietinum L. HOM05D006816 ORTHO05D008666 3.2e-159 566.2 551 57.2
AUR62005487 Chenopodium quinoa HOM05D006816 ORTHO05D008666 4.1e-159 565.8 609 53.5
C06p38240 Brassica napus HOM05D006816 ORTHO05D008666 1.6e-158 563.9 545 58.9
BolC6t38923H Brassica oleracea HOM05D006816 ORTHO05D008666 1.3e-157 560.8 547 58.5
BraA07t30858Z Brassica rapa HOM05D006816 ORTHO05D008666 3.0e-157 559.7 550 58.4
BcaC08g46032 Brassica carinata HOM05D006816 ORTHO05D008666 3.9e-157 559.3 547 58.9
ClCG05G025840 Citrullus lanatus HOM05D006816 ORTHO05D008666 3.9e-157 559.3 544 60.7
Duzib251G0886 Durio zibethinus HOM05D006816 ORTHO05D008666 1.1e-156 557.8 546 64.3
unitig_699.g19932 Utricularia gibba HOM05D006816 ORTHO05D008666 5.6e-156 555.4 540 57.4
A07p32350 Brassica napus HOM05D006816 ORTHO05D008666 2.1e-155 553.5 550 57.8
DCAR_031163 Daucus carota HOM05D006816 ORTHO05D008666 2.1e-155 553.5 534 58.1
TPR.G6183 Trifolium pratense HOM05D006816 ORTHO05D008666 3.6e-155 552.7 549 55.6
CAN.G436.5 Capsicum annuum HOM05D006816 ORTHO05D008666 4.1e-151 539.3 460 61.7
Psat7g059360 Pisum sativum HOM05D006816 ORTHO05D008666 7.8e-150 535.0 542 55.5
Nitab4.5_0000524g0100 Nicotiana tabacum HOM05D006816 ORTHO05D008666 1.8e-146 523.9 453 63.4
ATR0824G245 Amborella trichopoda HOM05D006816 ORTHO05D008666 3.7e-144 516.2 545 54.3
Sc11g0000930 Simmondsia chinensis HOM05D006816 ORTHO05D008666 6.6e-141 505.4 456 66.0
Zm00001eb319330 Zea mays HOM05D006816 ORTHO05D008666 2.3e-133 480.3 568 48.9
Thecc.02G261900 Theobroma cacao HOM05D006816 ORTHO05D008666 1.7e-125 454.1 382 65.7
SGA_v2.0_scaffold100G29566 Striga asiatica HOM05D006816 ORTHO05D008666 3.9e-125 453.0 584 51.2
CiPaw.05G180700 Carya illinoinensis HOM05D006816 ORTHO05D008666 8.7e-117 425.2 326 69.9
FAN07G2231 Fragaria x ananassa HOM05D006816 ORTHO05D008666 8.7e-117 425.2 382 63.1
Potri.010G047500 Populus trichocarpa HOM05D006816 ORTHO05D008666 1.5e-116 424.5 369 62.9
arahy.Tifrunner.gnm1.ann1.2HFS1Z Arachis hypogaea HOM05D006816 ORTHO05D008666 2.9e-112 410.2 377 60.2
arahy.Tifrunner.gnm1.ann1.CH9KSW Arachis hypogaea HOM05D006816 ORTHO05D008666 4.2e-111 406.4 377 59.7
Prupe.1G246300 Prunus persica HOM05D006816 ORTHO05D008666 2.5e-108 397.1 380 58.4
SEGI_18687 Sequoiadendron giganteum HOM05D006816 ORTHO05D008666 4.5e-105 386.3 542 42.8
Os12g0292900 Oryza sativa ssp. japonica HOM05D006816 ORTHO05D008666 4.8e-91 339.7 372 51.9
HPP92_023364 Vanilla planifolia HOM05D006816 ORTHO05D008666 4.2e-87 326.6 318 56.3
CDE02G3152 Ceratophyllum demersum HOM05D006816 ORTHO05D008666 1.6e-78 298.1 401 46.9
MBI17_g43191_MAGBIO Magnolia biondii HOM05D006816 ORTHO05D008666 1.2e-65 255.4 227 62.1
Mapoly0088s0066 Marchantia polymorpha HOM05D006816 ORTHO05D008666 2.9e-64 250.8 572 33.6
Pp3c11_24610 Physcomitrium patens HOM05D006816 ORTHO05D008666 3.4e-44 184.1 540 30.9
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 7.3e-39 166.4 125 65.6
Psat3g153200 Pisum sativum HOM05D006816 ORTHO05D008666 1.1e-37 162.5 116 69.0
Glyma.08G131850 Glycine max HOM05D006816 ORTHO05D008666 2.3e-32 144.8 179 48.0
Psat2g121560 Pisum sativum HOM05D006816 ORTHO05D008666 5.1e-32 143.7 100 70.0
Psat4g077560 Pisum sativum HOM05D006816 ORTHO05D008666 5.2e-29 133.7 95 70.5
COL.COLO4_35805 Corchorus olitorius HOM05D006816 ORTHO05D008666 6.8e-29 133.3 97 68.0
HPP92_023363 Vanilla planifolia HOM05D006816 ORTHO05D008666 6.8e-29 133.3 134 53.7
CBR_g52389 Chara braunii HOM05D006816 ORTHO05D008666 2.9e-27 127.9 331 30.2
Actinidia08129 Actinidia chinensis HOM05D006816 ORTHO05D008666 6.0e-25 120.2 81 76.5
Actinidia01355 Actinidia chinensis HOM05D006816 ORTHO05D008666 9.9e-20 102.8 59 83.1
CDE09G0157 Ceratophyllum demersum HOM05D006816 ORTHO05D008666 7.1e-18 96.7 163 37.4
FvH4_4g35670 Fragaria vesca HOM05D006816 ORTHO05D008666 2.4e-13 81.6 60 70.0
FAN22G1065 Fragaria x ananassa HOM05D000247 ORTHO05D000288 2.6e-12 78.2 63 65.1
Glyma.08G131775 Glycine max HOM05D006816 ORTHO05D008666 1.0e-08 66.2 84 47.6
Atru.chr11.2546 Acer truncatum HOM05D006816 ORTHO05D008666 3.3e-07 61.2 72 50.0
Actinidia08130 Actinidia chinensis HOM05D006816 ORTHO05D056942 4.8e-06 57.4 51 60.8


User provided reference genes

Program Settings