Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008443 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.2e-42 176.0 84 100.0
CSS0006424 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.3e-09 66.2 47 63.8
CSS0013920 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.3e-09 66.2 47 63.8
Manes.12G101375 Manihot esculenta HOM05D000004 ORTHO05D000002 3.0e-09 65.1 48 58.3
Manes.14G045351 Manihot esculenta HOM05D000004 ORTHO05D000002 3.0e-09 65.1 48 58.3
Atru.chr7.1025 Acer truncatum HOM05D000004 ORTHO05D000002 5.1e-09 64.3 49 59.2
Atru.chr8.283 Acer truncatum HOM05D000004 ORTHO05D000002 5.1e-09 64.3 49 59.2
Potri.004G014401 Populus trichocarpa HOM05D000004 ORTHO05D000002 1.9e-08 62.4 47 53.2
Sopen02g010330 Solanum pennellii HOM05D000004 ORTHO05D000002 1.9e-08 62.4 53 56.6
Sopen03g012390 Solanum pennellii HOM05D000004 ORTHO05D000002 1.9e-08 62.4 47 59.6
Sopen03g025570 Solanum pennellii HOM05D000290 ORTHO05D007356 1.9e-08 62.4 47 59.6
Sopen04g026810 Solanum pennellii HOM05D000004 ORTHO05D000002 1.9e-08 62.4 47 59.6
Sopen05g028570 Solanum pennellii HOM05D000004 ORTHO05D000002 1.9e-08 62.4 47 61.7
Sopen07g016960 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-08 62.4 47 59.6
Sopen11g014650 Solanum pennellii HOM05D000004 ORTHO05D000002 1.9e-08 62.4 47 59.6
Sopen12g017890 Solanum pennellii HOM05D000004 ORTHO05D000002 1.9e-08 62.4 47 59.6
Sopen01g011390 Solanum pennellii HOM05D000004 ORTHO05D000002 2.5e-08 62.0 47 57.4
Sopen02g012390 Solanum pennellii HOM05D000004 ORTHO05D000002 2.5e-08 62.0 47 59.6
Sopen03g033370 Solanum pennellii HOM05D000004 ORTHO05D000002 2.5e-08 62.0 47 59.6
Sopen04g020730 Solanum pennellii HOM05D000004 ORTHO05D000002 2.5e-08 62.0 47 59.6
Sopen05g012140 Solanum pennellii HOM05D000004 ORTHO05D000002 2.5e-08 62.0 47 59.6
Sopen05g026540 Solanum pennellii HOM05D000004 ORTHO05D000002 2.5e-08 62.0 47 59.6
Sopen07g017800 Solanum pennellii HOM05D000004 ORTHO05D000002 2.5e-08 62.0 47 59.6
Sopen07g025250 Solanum pennellii HOM05D000004 ORTHO05D000002 2.5e-08 62.0 47 59.6
Sopen09g009570 Solanum pennellii HOM05D000004 ORTHO05D000002 2.5e-08 62.0 47 59.6
Sopen09g023470 Solanum pennellii HOM05D000004 ORTHO05D000002 2.5e-08 62.0 47 59.6
Sopen10g005990 Solanum pennellii HOM05D000004 ORTHO05D000002 2.5e-08 62.0 47 59.6
Sopen11g022600 Solanum pennellii HOM05D000004 ORTHO05D000002 2.5e-08 62.0 47 59.6
Sopen12g024530 Solanum pennellii HOM05D000004 ORTHO05D000002 2.5e-08 62.0 47 59.6
ClCG10G007950 Citrullus lanatus HOM05D000004 ORTHO05D000002 3.3e-08 61.6 68 48.5
Sopen01g025050 Solanum pennellii HOM05D000004 ORTHO05D000002 3.3e-08 61.6 47 57.4
Sopen08g019200 Solanum pennellii HOM05D000004 ORTHO05D000002 3.3e-08 61.6 47 59.6
Sopen11g019750 Solanum pennellii HOM05D000004 ORTHO05D000002 4.3e-08 61.2 47 59.6
QL01p005990 Quercus lobata HOM05D000004 ORTHO05D000002 5.6e-08 60.8 73 42.5
QL04p041450 Quercus lobata HOM05D000004 ORTHO05D000002 5.6e-08 60.8 73 42.5
QL05p055474 Quercus lobata HOM05D000004 ORTHO05D000002 5.6e-08 60.8 73 42.5
QL93p1800_0008 Quercus lobata HOM05D000004 ORTHO05D000002 5.6e-08 60.8 73 42.5
Sopen05g009900 Solanum pennellii HOM05D000004 ORTHO05D000002 5.6e-08 60.8 47 57.4
Sopen05g029610 Solanum pennellii HOM05D000004 ORTHO05D000002 5.6e-08 60.8 47 57.4
Sopen07g017950 Solanum pennellii HOM05D000004 ORTHO05D000002 5.6e-08 60.8 48 58.3
Sopen06g010510 Solanum pennellii HOM05D000004 ORTHO05D000002 7.3e-08 60.5 47 57.4
CSS0004339 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 9.6e-08 60.1 48 54.2
QL05p016549 Quercus lobata HOM05D000004 ORTHO05D000002 9.6e-08 60.1 73 42.5
Sopen11g021550 Solanum pennellii HOM05D000004 ORTHO05D000002 9.6e-08 60.1 47 57.4
Sopen12g015040 Solanum pennellii HOM05D000004 ORTHO05D000002 9.6e-08 60.1 47 57.4
EL10Ac7g17805 Beta vulgaris HOM05D004909 ORTHO05D009316 1.2e-07 59.7 70 42.9
Sopen05g016250 Solanum pennellii HOM05D000004 ORTHO05D000002 1.6e-07 59.3 47 57.4
Sopen08g005590 Solanum pennellii HOM05D000004 ORTHO05D000002 1.6e-07 59.3 47 57.4
CSS0037139 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.1e-07 58.9 48 52.1
ClCG08G000140 Citrullus lanatus HOM05D000004 ORTHO05D000002 2.1e-07 58.9 50 56.0
Sopen08g004730 Solanum pennellii HOM05D000004 ORTHO05D000002 2.1e-07 58.9 48 50.0
Sopen12g027950 Solanum pennellii HOM05D000004 ORTHO05D000002 2.1e-07 58.9 45 60.0
PGSC0003DMG400000388 Solanum tuberosum HOM05D000004 ORTHO05D000002 2.1e-07 58.9 48 50.0
Sopen04g010080 Solanum pennellii HOM05D000004 ORTHO05D000002 2.8e-07 58.5 48 50.0
Sopen12g018380 Solanum pennellii HOM05D000691 ORTHO05D000378 2.8e-07 58.5 48 50.0
THA.LOC104816062 Tarenaya hassleriana HOM05D000004 ORTHO05D000002 2.8e-07 58.5 48 47.9
A09p01570 Brassica napus HOM05D000004 ORTHO05D000002 3.6e-07 58.2 48 56.2
Sopen04g014160 Solanum pennellii HOM05D000004 ORTHO05D000002 3.6e-07 58.2 47 57.4
Sopen05g011340 Solanum pennellii HOM05D000004 ORTHO05D000002 3.6e-07 58.2 48 47.9
Sopen06g016840 Solanum pennellii HOM05D000004 ORTHO05D000002 3.6e-07 58.2 48 47.9
Sopen10g020660 Solanum pennellii HOM05D000004 ORTHO05D000002 3.6e-07 58.2 48 47.9
Sopen12g008510 Solanum pennellii HOM05D000691 ORTHO05D000378 3.6e-07 58.2 48 50.0
Sopen00g013620 Solanum pennellii HOM05D000004 ORTHO05D000002 4.7e-07 57.8 48 50.0
Sopen07g011130 Solanum pennellii HOM05D000004 ORTHO05D000002 4.7e-07 57.8 46 56.5
CsaV3_4G021860 Cucumis sativus L. HOM05D000691 ORTHO05D000378 6.2e-07 57.4 49 51.0
Ah.13g069290 Amaranthus hybridus HOM05D000004 ORTHO05D000002 8.1e-07 57.0 50 50.0
Sopen02g007550 Solanum pennellii HOM05D000004 ORTHO05D000378 8.1e-07 57.0 47 55.3
Sopen04g014250 Solanum pennellii HOM05D000004 ORTHO05D000378 8.1e-07 57.0 48 47.9
Sopen09g023520 Solanum pennellii HOM05D000004 ORTHO05D000002 8.1e-07 57.0 47 51.1
AUR62022350 Chenopodium quinoa HOM05D000004 ORTHO05D000002 1.4e-06 56.2 47 57.4
FvH4_1g23712 Fragaria vesca HOM05D000004 ORTHO05D000002 1.4e-06 56.2 47 53.2
FvH4_1g29809 Fragaria vesca HOM05D000004 ORTHO05D000002 1.4e-06 56.2 47 53.2
SpUn0451_0010 Schrenkiella parvula HOM05D000004 ORTHO05D000002 1.4e-06 56.2 48 54.2
Sopen07g015160 Solanum pennellii HOM05D000691 ORTHO05D000378 1.4e-06 56.2 48 47.9
AUR62035181 Chenopodium quinoa HOM05D000004 ORTHO05D000002 1.8e-06 55.8 47 55.3
SHI52889 Sapria himalayana HOM05D000004 ORTHO05D000002 1.8e-06 55.8 46 54.3
Sopen10g013720 Solanum pennellii HOM05D000004 ORTHO05D000002 1.8e-06 55.8 47 55.3
CiPaw.04G042200 Carya illinoinensis HOM05D000004 ORTHO05D000002 2.4e-06 55.5 48 47.9
SHI45133 Sapria himalayana HOM05D000004 ORTHO05D000002 2.4e-06 55.5 47 53.2
Sopen00g001810 Solanum pennellii HOM05D000004 ORTHO05D000002 2.4e-06 55.5 47 48.9
Sopen08g015300 Solanum pennellii HOM05D000004 ORTHO05D000002 2.4e-06 55.5 47 55.3
Sopen09g016390 Solanum pennellii HOM05D000004 ORTHO05D000002 2.4e-06 55.5 39 66.7
Sopen12g011100 Solanum pennellii HOM05D000004 ORTHO05D000002 2.4e-06 55.5 48 45.8
EL10Ac6g14788 Beta vulgaris HOM05D000004 ORTHO05D000002 3.1e-06 55.1 44 52.3
Manes.04G009666 Manihot esculenta HOM05D000004 ORTHO05D000002 3.1e-06 55.1 80 42.5
Sp4g07840 Schrenkiella parvula HOM05D000399 ORTHO05D000002 3.1e-06 55.1 48 52.1
Sopen04g016000 Solanum pennellii HOM05D000004 ORTHO05D000378 3.1e-06 55.1 48 43.8
CsaV3_5G023160 Cucumis sativus L. HOM05D001517 ORTHO05D001424 4.0e-06 54.7 61 41.0
RhsimMtG0001900 Rhododendron simsii HOM05D004291 ORTHO05D005620 4.0e-06 54.7 68 36.8
EL10Ac8g19739 Beta vulgaris HOM05D000004 ORTHO05D000002 5.2e-06 54.3 50 48.0
FvH4_6g34501 Fragaria vesca HOM05D000004 ORTHO05D000002 5.2e-06 54.3 73 41.1
PGR142G0242 Punica granatum HOM05D000004 ORTHO05D000002 5.2e-06 54.3 48 47.9
SHI54937 Sapria himalayana HOM05D000004 ORTHO05D000002 5.2e-06 54.3 47 51.1
Sopen07g006780 Solanum pennellii HOM05D000014 ORTHO05D000002 5.2e-06 54.3 48 43.8
CsaV3_1G028570 Cucumis sativus L. HOM05D000004 ORTHO05D000002 6.9e-06 53.9 47 51.1
CsaV3_1G031080 Cucumis sativus L. HOM05D000691 ORTHO05D000378 6.9e-06 53.9 47 51.1
CsaV3_5G014110 Cucumis sativus L. HOM05D003698 ORTHO05D004320 6.9e-06 53.9 47 51.1
CsaV3_5G018680 Cucumis sativus L. HOM05D000052 ORTHO05D000046 6.9e-06 53.9 47 51.1
CsaV3_6G022400 Cucumis sativus L. HOM05D001503 ORTHO05D003820 6.9e-06 53.9 47 51.1
CsaV3_UNG167240 Cucumis sativus L. HOM05D011462 ORTHO05D014612 6.9e-06 53.9 47 51.1
CsaV3_UNG167280 Cucumis sativus L. HOM05D013071 ORTHO05D016268 6.9e-06 53.9 47 51.1
Sp7g09270 Schrenkiella parvula HOM05D000004 ORTHO05D000002 6.9e-06 53.9 48 52.1
Sopen02g007870 Solanum pennellii HOM05D000002 ORTHO05D000001 6.9e-06 53.9 50 46.0
Sopen02g009190 Solanum pennellii HOM05D000004 ORTHO05D000002 6.9e-06 53.9 50 46.0
Sopen07g013260 Solanum pennellii HOM05D000691 ORTHO05D000378 6.9e-06 53.9 48 45.8
Manes.10G127633 Manihot esculenta HOM05D000004 ORTHO05D000002 9.0e-06 53.5 80 41.2
SpUn0043_0020 Schrenkiella parvula HOM05D000004 ORTHO05D000002 9.0e-06 53.5 49 51.0
SpUn0045_0010 Schrenkiella parvula HOM05D000004 ORTHO05D000002 9.0e-06 53.5 49 51.0
Sopen01g026700 Solanum pennellii HOM05D000004 ORTHO05D000002 9.0e-06 53.5 48 45.8
Sopen02g009460 Solanum pennellii HOM05D000691 ORTHO05D000378 9.0e-06 53.5 44 54.5


User provided reference genes

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