Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008439 Camellia sinensis var. sinensis HOM05D008299 ORTHO05D010400 1.8e-43 178.7 83 100.0
CSS0021182 Camellia sinensis var. sinensis HOM05D008299 ORTHO05D010400 1.8e-43 178.7 83 100.0
CAN.G343.2 Capsicum annuum HOM05D000445 ORTHO05D010400 8.5e-41 169.9 82 93.9
CAN.G1298.15 Capsicum annuum HOM05D008299 ORTHO05D010400 7.2e-40 166.8 82 92.7
CAN.G219.11 Capsicum annuum HOM05D000445 ORTHO05D010400 7.9e-39 163.3 82 90.2
CAN.G1648.16 Capsicum annuum HOM05D008299 ORTHO05D010400 1.8e-38 162.2 82 90.2
CAN.G100.36 Capsicum annuum HOM05D008299 ORTHO05D010400 3.3e-37 157.9 79 91.1
CAN.G129.17 Capsicum annuum HOM05D008299 ORTHO05D010400 8.2e-36 153.3 82 85.4
CAN.G719.1 Capsicum annuum HOM05D008299 ORTHO05D010400 5.3e-35 150.6 79 86.1
Solyc11g021080.3 Solanum lycopersicum HOM05D008299 ORTHO05D010400 5.3e-35 150.6 82 84.1
Solyc01g017080.2 Solanum lycopersicum HOM05D008299 ORTHO05D010400 9.1e-35 149.8 82 81.7
Solyc02g011920.2 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.2e-26 122.9 67 83.6
SGA_v2.0_scaffold379G50347 Striga asiatica HOM05D008299 ORTHO05D010400 1.7e-25 119.0 66 81.8
Solyc11g018700.3 Solanum lycopersicum HOM05D008299 ORTHO05D010400 2.6e-21 105.1 49 93.9
Migut.L00537 Erythranthe guttata HOM05D008299 ORTHO05D010400 4.8e-20 100.9 50 90.0
CAN.G1178.2 Capsicum annuum HOM05D008299 ORTHO05D010400 6.3e-20 100.5 48 91.7
Solyc00g500038.1 Solanum lycopersicum HOM05D008299 ORTHO05D010400 1.4e-19 99.4 47 91.5
Solyc00g500045.1 Solanum lycopersicum HOM05D008299 ORTHO05D010400 1.4e-19 99.4 47 91.5
Solyc00g500082.1 Solanum lycopersicum HOM05D008299 ORTHO05D010400 1.4e-19 99.4 47 91.5
Solyc00g500127.1 Solanum lycopersicum HOM05D008299 ORTHO05D010400 1.4e-19 99.4 47 91.5
Solyc00g500197.1 Solanum lycopersicum HOM05D008299 ORTHO05D010400 1.4e-19 99.4 47 91.5
Solyc00g500300.1 Solanum lycopersicum HOM05D008299 ORTHO05D010400 1.4e-19 99.4 47 91.5
Solyc00g500326.1 Solanum lycopersicum HOM05D008299 ORTHO05D010400 1.4e-19 99.4 47 91.5
Solyc01g017150.1 Solanum lycopersicum HOM05D008299 ORTHO05D010400 5.3e-19 97.4 49 83.7
Potri.019G028450 Populus trichocarpa HOM05D008299 ORTHO05D010400 1.6e-18 95.9 68 72.1
Thhalv10003089m.g Eutrema salsugineum HOM05D008299 ORTHO05D010400 2.7e-18 95.1 55 78.2
ATCG00870 Arabidopsis thaliana HOM05D008299 ORTHO05D010400 6.1e-15 84.0 51 76.5
ATCG01270 Arabidopsis thaliana HOM05D008299 ORTHO05D010400 6.1e-15 84.0 51 76.5
BraSC48t46294Z Brassica rapa HOM05D008299 ORTHO05D010400 6.1e-15 84.0 51 76.5
BraSC48t46311Z Brassica rapa HOM05D008299 ORTHO05D010400 6.1e-15 84.0 51 76.5
BraSC48t46344Z Brassica rapa HOM05D008299 ORTHO05D010400 6.1e-15 84.0 51 76.5
CARHR282310 Cardamine hirsuta HOM05D008299 ORTHO05D010400 6.1e-15 84.0 51 76.5
CARHR282550 Cardamine hirsuta HOM05D008299 ORTHO05D010400 6.1e-15 84.0 51 76.5
Thhalv10012154m.g Eutrema salsugineum HOM05D008299 ORTHO05D010400 1.0e-14 83.2 56 69.6
Solyc03g058240.1 Solanum lycopersicum HOM05D008299 ORTHO05D010400 4.0e-14 81.3 49 73.5
BraSC54t46357Z Brassica rapa HOM05D008299 ORTHO05D010400 5.2e-14 80.9 42 88.1
Gohir.1Z050502 Gossypium hirsutum HOM05D008299 ORTHO05D010400 5.2e-14 80.9 42 88.1
Gohir.D02G117444 Gossypium hirsutum HOM05D008299 ORTHO05D010400 5.2e-14 80.9 42 88.1
C06p23160 Brassica napus HOM05D008299 ORTHO05D010400 1.5e-13 79.3 51 72.5
C09p24750 Brassica napus HOM05D008299 ORTHO05D010400 1.5e-13 79.3 51 72.5
BolSC29t60493H Brassica oleracea HOM05D008299 ORTHO05D010400 1.5e-13 79.3 51 72.5
BolSC37t60783H Brassica oleracea HOM05D008299 ORTHO05D010400 1.5e-13 79.3 51 72.5
BolSC44t60837H Brassica oleracea HOM05D008299 ORTHO05D010400 1.5e-13 79.3 51 72.5
BolSC45t60893H Brassica oleracea HOM05D008299 ORTHO05D010400 1.5e-13 79.3 51 72.5
BolSC49t61213H Brassica oleracea HOM05D008299 ORTHO05D010400 1.5e-13 79.3 51 72.5
BraSC103t45416Z Brassica rapa HOM05D008299 ORTHO05D010400 1.5e-13 79.3 51 72.5
BraSC103t45438Z Brassica rapa HOM05D008299 ORTHO05D010400 1.5e-13 79.3 51 72.5
BraSC143t45671Z Brassica rapa HOM05D008299 ORTHO05D010400 1.5e-13 79.3 51 72.5
BraSC25t45895Z Brassica rapa HOM05D008299 ORTHO05D010400 1.5e-13 79.3 51 72.5
BraSC138t45545Z Brassica rapa HOM05D008299 ORTHO05D010400 9.8e-13 76.6 46 82.6
BraSC58t46447Z Brassica rapa HOM05D008299 ORTHO05D010400 1.3e-12 76.3 42 83.3
BraSC59t46562Z Brassica rapa HOM05D008299 ORTHO05D010400 1.3e-12 76.3 42 83.3
BolC2t08923H Brassica oleracea HOM05D008299 ORTHO05D010400 2.2e-12 75.5 48 72.9
BolSC29t60562H Brassica oleracea HOM05D008299 ORTHO05D010400 2.2e-12 75.5 43 79.1
AL9U12040 Arabidopsis lyrata HOM05D008299 ORTHO05D010400 2.4e-11 72.0 46 71.7
RcHm_v2.0_Chr5g0051131 Rosa chinensis HOM05D008299 ORTHO05D010400 3.1e-11 71.6 34 88.2
RcHm_v2.0_CPg0501791 Rosa chinensis HOM05D008299 ORTHO05D010400 3.1e-11 71.6 34 88.2
RcHm_v2.0_CPg0502621 Rosa chinensis HOM05D008299 ORTHO05D010400 3.1e-11 71.6 34 88.2
ClCG00G002340 Citrullus lanatus HOM05D008299 ORTHO05D010400 2.5e-08 62.0 30 86.7
Gohir.A09G103316 Gossypium hirsutum HOM05D000216 ORTHO05D000634 3.2e-08 61.6 30 90.0
Hma1.2p1_0005F.1_g004230 Hydrangea macrophylla HOM05D000083 ORTHO05D003582 8.0e-07 57.0 35 74.3
Medtr0002s0330 Medicago truncatula HOM05D008299 ORTHO05D010400 4.0e-06 54.7 80 38.8


User provided reference genes

Program Settings