Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008437 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 5.2e-105 384.4 197 100.0
Atru.chr6.1901 Acer truncatum HOM05D003980 ORTHO05D005301 2.9e-79 298.9 182 81.9
vmacro19166 Vaccinium macrocarpon HOM05D003980 ORTHO05D005301 6.4e-79 297.7 182 84.6
Rhsim08G0195900 Rhododendron simsii HOM05D003980 ORTHO05D005301 1.4e-78 296.6 182 84.6
COL.COLO4_37237 Corchorus olitorius HOM05D003980 ORTHO05D005301 3.2e-78 295.4 181 82.3
CSS0000982 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 4.6e-77 291.6 181 82.9
Cfa018720 Carpinus fangiana HOM05D003980 ORTHO05D005301 4.6e-77 291.6 184 79.3
Gohir.D09G248900 Gossypium hirsutum HOM05D003980 ORTHO05D005301 4.6e-77 291.6 175 83.4
Gorai.006G273300 Gossypium raimondii HOM05D003980 ORTHO05D005301 4.6e-77 291.6 175 83.4
TAR371G0735 Trochodendron aralioides HOM05D003980 ORTHO05D005301 1.0e-76 290.4 182 81.3
TWI14G0519 Tripterygium wilfordii HOM05D003980 ORTHO05D005301 1.7e-76 289.7 190 77.9
Gohir.A09G248100 Gossypium hirsutum HOM05D003980 ORTHO05D005301 6.6e-76 287.7 175 82.9
Haze_07113 Corylus avellana HOM05D003980 ORTHO05D005301 1.5e-75 286.6 184 78.8
Duzib084G0479 Durio zibethinus HOM05D003980 ORTHO05D005301 4.3e-75 285.0 174 82.2
Nn4g22168 Nelumbo nucifera HOM05D003980 ORTHO05D005301 4.3e-75 285.0 182 79.7
Thecc.03G138500 Theobroma cacao HOM05D003980 ORTHO05D005301 4.3e-75 285.0 174 81.6
TWI39G0366 Tripterygium wilfordii HOM05D003980 ORTHO05D005301 4.3e-75 285.0 181 80.1
QL10p000901 Quercus lobata HOM05D003980 ORTHO05D005301 5.6e-75 284.6 181 79.6
Duzib205G0834 Durio zibethinus HOM05D003980 ORTHO05D005301 9.6e-75 283.9 174 81.6
ECA232G4466 Erigeron canadensis HOM05D003980 ORTHO05D005301 1.2e-74 283.5 182 79.1
HanXRQChr16g0498871 Helianthus annuus HOM05D003980 ORTHO05D005301 4.7e-74 281.6 182 78.0
Manes.06G125700 Manihot esculenta HOM05D003980 ORTHO05D005301 4.7e-74 281.6 179 80.4
Ciclev10030650m.g Citrus clementina HOM05D003980 ORTHO05D005301 1.4e-73 280.0 182 77.5
MD14G1148800 Malus domestica HOM05D003980 ORTHO05D005301 1.4e-73 280.0 181 78.5
Cc04_g05920 Coffea canephora HOM05D003980 ORTHO05D005301 1.8e-73 279.6 183 80.9
Dinv13736 Davidia involucrata HOM05D003980 ORTHO05D005301 1.8e-73 279.6 182 80.2
MD06G1132400 Malus domestica HOM05D003980 ORTHO05D005301 1.8e-73 279.6 190 75.8
Lsat_1_v5_gn_4_84700 Lactuca sativa HOM05D003980 ORTHO05D005301 8.9e-73 277.3 182 77.5
GSVIVG01008633001 Vitis vinifera HOM05D003980 ORTHO05D005301 8.9e-73 277.3 180 80.0
HanXRQChr09g0273931 Helianthus annuus HOM05D003980 ORTHO05D005301 1.5e-72 276.6 182 76.9
CiPaw.11G001400 Carya illinoinensis HOM05D003980 ORTHO05D005301 2.0e-72 276.2 178 79.2
Nitab4.5_0000663g0190 Nicotiana tabacum HOM05D003980 ORTHO05D005301 3.4e-72 275.4 169 81.7
Nitab4.5_0002450g0020 Nicotiana tabacum HOM05D003980 ORTHO05D005301 4.4e-72 275.0 169 81.7
RcHm_v2.0_Chr7g0188941 Rosa chinensis HOM05D003980 ORTHO05D005301 4.4e-72 275.0 181 77.3
Sopen03g037250 Solanum pennellii HOM05D003980 ORTHO05D005301 4.4e-72 275.0 182 77.5
Potri.015G105000 Populus trichocarpa HOM05D003980 ORTHO05D005301 5.8e-72 274.6 179 78.8
Solyc03g118350.4 Solanum lycopersicum HOM05D003980 ORTHO05D005301 5.8e-72 274.6 182 77.5
Potri.012G105800 Populus trichocarpa HOM05D003980 ORTHO05D005301 7.6e-72 274.2 181 79.0
PGSC0003DMG401014249 Solanum tuberosum HOM05D003980 ORTHO05D005301 9.9e-72 273.9 182 76.9
CANSAT56G3290 Cannabis sativa HOM05D003980 ORTHO05D005301 1.3e-71 273.5 179 77.7
EL10Ac5g11306 Beta vulgaris HOM05D003980 ORTHO05D005301 2.9e-71 272.3 182 75.8
Lj9A485G82 Lonicera japonica HOM05D003980 ORTHO05D005301 3.8e-71 271.9 182 76.9
Nn3g16303 Nelumbo nucifera HOM05D003980 ORTHO05D005301 3.8e-71 271.9 182 78.0
ATR0693G246 Amborella trichopoda HOM05D003980 ORTHO05D005301 4.9e-71 271.6 174 78.7
Eucgr.B00073 Eucalyptus grandis HOM05D003980 ORTHO05D005301 4.9e-71 271.6 175 78.9
MSTRG.11233 Avicennia marina HOM05D003980 ORTHO05D005301 6.4e-71 271.2 166 83.1
FAN18G3345 Fragaria x ananassa HOM05D003980 ORTHO05D005301 6.4e-71 271.2 181 76.2
Prupe.5G143400 Prunus persica HOM05D003980 ORTHO05D005301 1.1e-70 270.4 181 75.7
Aqoxy5G03175 Aquilegia oxysepala HOM05D003980 ORTHO05D005301 1.9e-70 269.6 181 76.2
FAN08G3345 Fragaria x ananassa HOM05D003980 ORTHO05D005301 3.2e-70 268.9 181 75.1
FAN13G1995 Fragaria x ananassa HOM05D003980 ORTHO05D005301 3.2e-70 268.9 187 74.3
Peaxi162Scf00314g00535 Petunia axillaris HOM05D003980 ORTHO05D005301 3.2e-70 268.9 177 78.0
DCAR_025658 Daucus carota HOM05D003980 ORTHO05D005301 5.4e-70 268.1 185 75.1
Hund02497 Selenicereus undatus HOM05D003980 ORTHO05D005301 7.1e-70 267.7 177 76.8
ClCG06G018320 Citrullus lanatus HOM05D003980 ORTHO05D005301 9.3e-70 267.3 178 75.8
FvH4_5g09220 Fragaria vesca HOM05D003980 ORTHO05D005301 9.3e-70 267.3 181 75.1
PGR083G0225 Punica granatum HOM05D003980 ORTHO05D005301 9.3e-70 267.3 167 82.6
Migut.I00610 Erythranthe guttata HOM05D003980 ORTHO05D005301 1.2e-69 266.9 166 80.7
Sabra12G0078100 Salix brachista HOM05D003980 ORTHO05D005301 1.6e-69 266.5 181 77.3
SalBow7G4845 Salvia bowleyana HOM05D003980 ORTHO05D005301 1.6e-69 266.5 167 82.6
Lj4g0027174 Lotus japonicus HOM05D003980 ORTHO05D005301 2.1e-69 266.2 184 77.2
MELO3C026163.2 Cucumis melo HOM05D003980 ORTHO05D005301 2.7e-69 265.8 178 75.8
CsaV3_1G000110 Cucumis sativus L. HOM05D003980 ORTHO05D005301 2.7e-69 265.8 178 75.8
Hund10056 Selenicereus undatus HOM05D003980 ORTHO05D005301 3.5e-69 265.4 182 75.3
FAN04G0599 Fragaria x ananassa HOM05D003980 ORTHO05D005301 4.6e-69 265.0 181 74.6
TPR.G21586 Trifolium pratense HOM05D003980 ORTHO05D005301 1.7e-68 263.1 162 82.7
Glyma.05G201200 Glycine max HOM05D003980 ORTHO05D005301 2.3e-68 262.7 184 75.5
Aa31LG11G3070 Aethionema arabicum HOM05D003980 ORTHO05D005301 3.0e-68 262.3 166 77.1
Phvul.002G282600 Phaseolus vulgaris HOM05D003980 ORTHO05D005301 3.0e-68 262.3 184 75.0
PSO591G0475 Papaver somniferum HOM05D003980 ORTHO05D005301 6.6e-68 261.2 182 74.2
PSO832G3889 Papaver somniferum HOM05D003980 ORTHO05D005301 6.6e-68 261.2 182 74.2
THA.LOC104821537 Tarenaya hassleriana HOM05D003980 ORTHO05D005301 1.5e-67 260.0 181 74.0
Glyma.08G008600 Glycine max HOM05D003980 ORTHO05D005301 5.6e-67 258.1 186 74.7
Sc04g0000260 Simmondsia chinensis HOM05D003980 ORTHO05D005301 7.3e-67 257.7 182 72.0
DCAR_021407 Daucus carota HOM05D003980 ORTHO05D005301 1.3e-66 256.9 182 73.1
Thhalv10003616m.g Eutrema salsugineum HOM05D003980 ORTHO05D005301 1.6e-66 256.5 168 76.8
Lalb_Chr13g0297021 Lupinus albus HOM05D003980 ORTHO05D005301 4.8e-66 255.0 180 74.4
Lalb_Chr23g0272921 Lupinus albus HOM05D003980 ORTHO05D005301 4.8e-66 255.0 176 76.1
Ah.02g114660 Amaranthus hybridus HOM05D003980 ORTHO05D005301 6.2e-66 254.6 182 72.5
Glyma.04G200300 Glycine max HOM05D003980 ORTHO05D005301 6.2e-66 254.6 179 73.2
Lj1g0007025 Lotus japonicus HOM05D003980 ORTHO05D005301 6.2e-66 254.6 186 73.1
CARHR189830 Cardamine hirsuta HOM05D003980 ORTHO05D005301 1.4e-65 253.4 181 70.7
Ca_17584_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 1.4e-65 253.4 177 76.8
Lalb_Chr12g0202411 Lupinus albus HOM05D003980 ORTHO05D005301 1.4e-65 253.4 184 72.3
Medtr3g498735 Medicago truncatula HOM05D003980 ORTHO05D005301 1.8e-65 253.1 179 74.3
arahy.Tifrunner.gnm1.ann1.1NY8SK Arachis hypogaea HOM05D003980 ORTHO05D005301 2.4e-65 252.7 179 73.7
A06p34620 Brassica napus HOM05D003980 ORTHO05D005301 3.1e-65 252.3 168 73.8
BraA06t26390Z Brassica rapa HOM05D003980 ORTHO05D005301 4.0e-65 251.9 168 73.8
C07p43870 Brassica napus HOM05D003980 ORTHO05D005301 5.3e-65 251.5 168 74.4
Lj5A88T63 Lonicera japonica HOM05D003980 ORTHO05D005301 5.3e-65 251.5 189 72.5
Psat5g054480 Pisum sativum HOM05D003980 ORTHO05D005301 5.3e-65 251.5 179 72.6
TPR.G12812 Trifolium pratense HOM05D003980 ORTHO05D005301 9.0e-65 250.8 180 73.3
Sp2g23510 Schrenkiella parvula HOM05D003980 ORTHO05D005301 1.2e-64 250.4 168 74.4
BcaNung01844 Brassica carinata HOM05D003980 ORTHO05D005301 1.5e-64 250.0 168 73.8
BolC7t44915H Brassica oleracea HOM05D003980 ORTHO05D005301 1.5e-64 250.0 168 73.8
Phvul.009G164700 Phaseolus vulgaris HOM05D003980 ORTHO05D005301 3.4e-64 248.8 174 71.8
VMungo1309G0598 Vigna mungo HOM05D003980 ORTHO05D005301 3.4e-64 248.8 176 72.2
AUR62034771 Chenopodium quinoa HOM05D003980 ORTHO05D005301 5.8e-64 248.1 182 71.4
Sabra15G0125200 Salix brachista HOM05D003980 ORTHO05D005301 5.8e-64 248.1 163 77.9
AUR62009517 Chenopodium quinoa HOM05D003980 ORTHO05D005301 9.9e-64 247.3 182 71.4
VMungo0251G0815 Vigna mungo HOM05D003980 ORTHO05D005301 9.9e-64 247.3 206 66.5
Dinv23210 Davidia involucrata HOM05D003980 ORTHO05D005301 1.7e-63 246.5 150 85.3
unitig_22.g6271 Utricularia gibba HOM05D003980 ORTHO05D005301 2.9e-63 245.7 182 73.6
Medtr8g100000 Medicago truncatula HOM05D003980 ORTHO05D005301 4.9e-63 245.0 177 73.4
arahy.Tifrunner.gnm1.ann1.US1BEE Arachis hypogaea HOM05D003980 ORTHO05D005301 6.4e-63 244.6 181 72.4
AL6G34990 Arabidopsis lyrata HOM05D003980 ORTHO05D005301 1.1e-62 243.8 167 72.5
AT5G23720 Arabidopsis thaliana HOM05D003980 ORTHO05D005301 2.4e-62 242.7 167 71.9
arahy.Tifrunner.gnm1.ann1.JJXJ29 Arachis hypogaea HOM05D003980 ORTHO05D005301 5.4e-62 241.5 181 71.8
Carub.0006s2147 Capsella rubella HOM05D003980 ORTHO05D005301 7.1e-62 241.1 167 71.3
Ca_16085_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 7.1e-62 241.1 179 72.1
Actinidia25530 Actinidia chinensis HOM05D003980 ORTHO05D005301 9.3e-62 240.7 138 88.4
Os01g0311500 Oryza sativa ssp. japonica HOM05D003980 ORTHO05D005301 2.1e-61 239.6 182 69.8
HPP92_006911 Vanilla planifolia HOM05D003980 ORTHO05D005301 2.3e-60 236.1 186 66.1
CSS0032153 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 3.0e-60 235.7 124 96.8
CDE01G0794 Ceratophyllum demersum HOM05D003980 ORTHO05D005301 8.7e-60 234.2 176 68.8
Zm00001eb130450 Zea mays HOM05D003980 ORTHO05D005301 1.5e-59 233.4 169 71.6
Ca_14153_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 4.3e-59 231.9 166 72.3
Ca_10885_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 5.6e-59 231.5 179 70.9
MBI19_g26308_MAGBIO Magnolia biondii HOM05D003980 ORTHO05D005301 5.6e-59 231.5 242 55.0
Psat5g054520 Pisum sativum HOM05D003980 ORTHO05D005301 1.9e-54 216.5 188 60.6
SEGI_36335 Sequoiadendron giganteum HOM05D003980 ORTHO05D005301 1.9e-54 216.5 163 68.7
Sed0025035 Sechium edule HOM05D003980 ORTHO05D005301 5.4e-54 214.9 169 68.0
Actinidia18313 Actinidia chinensis HOM05D003980 ORTHO05D005301 5.1e-52 208.4 121 87.6
Os01g0347000 Oryza sativa ssp. japonica HOM05D003980 ORTHO05D005301 9.6e-51 204.1 180 58.9
Zm00001eb340730 Zea mays HOM05D003980 ORTHO05D005301 4.8e-50 201.8 167 59.9
SGA_v2.0_scaffold143G35744 Striga asiatica HOM05D003980 ORTHO05D005301 4.2e-46 188.7 113 85.0
Cpa.g.sc4.108 Carica papaya HOM05D003980 ORTHO05D005301 3.3e-43 179.1 112 79.5
CDE05G3337 Ceratophyllum demersum HOM05D003980 ORTHO05D005301 1.6e-34 150.2 116 67.2
Mapoly0024s0055 Marchantia polymorpha HOM05D003980 ORTHO05D005301 1.4e-33 147.1 162 54.3
Pp3c9_1160 Physcomitrium patens HOM05D003980 ORTHO05D005301 3.1e-33 146.0 190 47.4
Pp3c9_1168 Physcomitrium patens HOM05D003980 ORTHO05D005301 3.1e-33 146.0 190 47.4
SMO116G0359 Selaginella moellendorffii HOM05D003980 ORTHO05D005301 1.4e-30 137.1 162 50.0
SHI14120 Sapria himalayana HOM05D003980 ORTHO05D005301 9.4e-30 134.4 208 42.8
Psat7g039040 Pisum sativum HOM05D003980 ORTHO05D005301 1.0e-23 114.4 76 75.0
CSS0026541 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 5.9e-16 88.6 48 91.7
SHI14119 Sapria himalayana HOM05D003980 ORTHO05D005301 1.9e-14 83.6 61 70.5
CSS0018148 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 7.2e-14 81.6 53 79.2
CSS0014341 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 1.1e-11 74.3 43 88.4


User provided reference genes

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