Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008431 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 1.1e-111 406.8 218 100.0
CSS0035623 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 1.4e-95 353.2 230 83.0
CSS0035791 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 3.2e-95 352.1 230 87.4
CSS0033199 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 1.3e-45 187.2 114 96.5
CSS0010716 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 1.2e-41 174.1 140 80.7
Dinv22062 Davidia involucrata HOM05D002859 ORTHO05D003120 2.6e-17 93.2 156 40.4
Rhsim12G0001500 Rhododendron simsii HOM05D002859 ORTHO05D003120 1.5e-15 87.4 45 91.1
Actinidia01539 Actinidia chinensis HOM05D002859 ORTHO05D003120 5.5e-15 85.5 114 48.2
Phvul.011G003500 Phaseolus vulgaris HOM05D002859 ORTHO05D003120 1.2e-14 84.3 53 73.6
vmacro00921 Vaccinium macrocarpon HOM05D002859 ORTHO05D003120 1.6e-14 84.0 115 46.1
vmacro00954 Vaccinium macrocarpon HOM05D002859 ORTHO05D003120 1.6e-14 84.0 115 46.1
DCAR_014056 Daucus carota HOM05D002859 ORTHO05D003120 2.7e-14 83.2 47 78.7
Oeu028619.1 Olea europaea HOM05D002859 ORTHO05D003120 4.7e-14 82.4 57 71.9
TPR.G25997 Trifolium pratense HOM05D002859 ORTHO05D003120 6.1e-14 82.0 90 47.8
arahy.Tifrunner.gnm1.ann1.FCJ5UL Arachis hypogaea HOM05D002859 ORTHO05D003120 8.0e-14 81.6 97 44.3
Ca_25698_v3 Cicer arietinum L. HOM05D002859 ORTHO05D003120 2.3e-13 80.1 106 42.5
GSVIVG01037132001 Vitis vinifera HOM05D002859 ORTHO05D003120 2.3e-13 80.1 48 79.2
Ah.05g170490 Amaranthus hybridus HOM05D002859 ORTHO05D003120 3.0e-13 79.7 111 42.3
Gohir.D02G103500 Gossypium hirsutum HOM05D002859 ORTHO05D003120 4.0e-13 79.3 52 71.2
Gorai.005G117600 Gossypium raimondii HOM05D002859 ORTHO05D003120 4.0e-13 79.3 52 71.2
Psat7g149800 Pisum sativum HOM05D002859 ORTHO05D003120 4.0e-13 79.3 106 45.3
VMungo1127G0800 Vigna mungo HOM05D002859 ORTHO05D003120 5.2e-13 79.0 57 64.9
Lj7C415G8 Lonicera japonica HOM05D002859 ORTHO05D003120 6.7e-13 78.6 44 79.5
Medtr4g035350 Medicago truncatula HOM05D002859 ORTHO05D003120 6.7e-13 78.6 55 65.5
Lsat_1_v5_gn_4_132200 Lactuca sativa HOM05D002859 ORTHO05D003120 8.8e-13 78.2 57 66.7
arahy.Tifrunner.gnm1.ann1.J0PFQP Arachis hypogaea HOM05D002859 ORTHO05D003120 1.2e-12 77.8 100 42.0
Nitab4.5_0003598g0110 Nicotiana tabacum HOM05D002859 ORTHO05D003120 1.2e-12 77.8 59 69.5
Cc10_g16150 Coffea canephora HOM05D002859 ORTHO05D003120 1.5e-12 77.4 42 88.1
Eucgr.F04091 Eucalyptus grandis HOM05D002859 ORTHO05D003120 1.5e-12 77.4 52 71.2
Cpa.g.sc249.14 Carica papaya HOM05D002859 ORTHO05D003120 2.0e-12 77.0 111 43.2
Thecc.08G165600 Theobroma cacao HOM05D002859 ORTHO05D003120 2.6e-12 76.6 52 69.2
Gohir.A02G088200 Gossypium hirsutum HOM05D002859 ORTHO05D003120 3.3e-12 76.3 53 67.9
MSTRG.25506 Avicennia marina HOM05D002859 ORTHO05D003120 4.4e-12 75.9 68 55.9
CARHR064600 Cardamine hirsuta HOM05D002859 ORTHO05D003120 4.4e-12 75.9 53 77.4
TWI12G1452 Tripterygium wilfordii HOM05D002859 ORTHO05D003120 4.4e-12 75.9 64 56.2
Atru.chr13.2591 Acer truncatum HOM05D002859 ORTHO05D003120 5.7e-12 75.5 102 44.1
COL.COLO4_25054 Corchorus olitorius HOM05D002859 ORTHO05D003120 7.5e-12 75.1 53 71.7
TAR381G0145 Trochodendron aralioides HOM05D002859 ORTHO05D003120 7.5e-12 75.1 59 71.2
Aa31LG4G9230 Aethionema arabicum HOM05D002859 ORTHO05D003120 9.7e-12 74.7 53 75.5
CiPaw.04G008400 Carya illinoinensis HOM05D002859 ORTHO05D003120 9.7e-12 74.7 116 45.7
SalBow7G1103 Salvia bowleyana HOM05D002859 ORTHO05D003120 9.7e-12 74.7 87 49.4
Ciclev10022444m.g Citrus clementina HOM05D002859 ORTHO05D003120 1.3e-11 74.3 53 71.7
Lalb_Chr01g0000171 Lupinus albus HOM05D002859 ORTHO05D003120 1.3e-11 74.3 61 59.0
Nitab4.5_0000079g0100 Nicotiana tabacum HOM05D002859 ORTHO05D003120 1.3e-11 74.3 53 71.7
Nitab4.5_0004387g0010 Nicotiana tabacum HOM05D002859 ORTHO05D003120 1.3e-11 74.3 42 83.3
AL2G30910 Arabidopsis lyrata HOM05D002859 ORTHO05D003120 2.2e-11 73.6 53 73.6
Thhalv10019211m.g Eutrema salsugineum HOM05D002859 ORTHO05D003120 2.8e-11 73.2 53 73.6
Solyc08g005060.3 Solanum lycopersicum HOM05D002859 ORTHO05D003120 3.7e-11 72.8 59 66.1
Migut.C01404 Erythranthe guttata HOM05D002859 ORTHO05D003120 4.8e-11 72.4 49 69.4
THA.LOC104809758 Tarenaya hassleriana HOM05D002859 ORTHO05D003120 4.8e-11 72.4 42 81.0
Sopen08g001080 Solanum pennellii HOM05D002859 ORTHO05D003120 6.3e-11 72.0 59 66.1
Carub.0002s1818 Capsella rubella HOM05D002859 ORTHO05D003120 8.2e-11 71.6 53 71.7
AT1G71310 Arabidopsis thaliana HOM05D002859 ORTHO05D003120 1.1e-10 71.2 53 71.7
EL10Ac1g01291 Beta vulgaris HOM05D002859 ORTHO05D003120 1.1e-10 71.2 50 64.0
Duzib177G0860 Durio zibethinus HOM05D002859 ORTHO05D003120 1.1e-10 71.2 52 67.3
Lj3g0004795 Lotus japonicus HOM05D002859 ORTHO05D003120 1.4e-10 70.9 49 63.3
Sc05g0005770 Simmondsia chinensis HOM05D002859 ORTHO05D003120 1.4e-10 70.9 43 74.4
PGSC0003DMG400001162 Solanum tuberosum HOM05D002859 ORTHO05D003120 1.8e-10 70.5 62 61.3
BcaC08g45785 Brassica carinata HOM05D002859 ORTHO05D003120 3.1e-10 69.7 56 64.3
ECA232G0801 Erigeron canadensis HOM05D002859 ORTHO05D003120 3.1e-10 69.7 59 62.7
Sabra19G0082000 Salix brachista HOM05D002859 ORTHO05D003120 3.1e-10 69.7 64 59.4
BcaB03g15599 Brassica carinata HOM05D002859 ORTHO05D003120 4.1e-10 69.3 56 64.3
A07p30790 Brassica napus HOM05D002859 ORTHO05D003120 4.1e-10 69.3 56 64.3
C06p35690 Brassica napus HOM05D002859 ORTHO05D003120 4.1e-10 69.3 56 64.3
BolC6t38692H Brassica oleracea HOM05D002859 ORTHO05D003120 4.1e-10 69.3 56 64.3
BraA07t30716Z Brassica rapa HOM05D002859 ORTHO05D003120 4.1e-10 69.3 56 64.3
Potri.019G068500 Populus trichocarpa HOM05D002859 ORTHO05D003120 4.1e-10 69.3 64 57.8
RcHm_v2.0_Chr6g0249441 Rosa chinensis HOM05D002859 ORTHO05D003120 4.1e-10 69.3 51 64.7
CDE02G3179 Ceratophyllum demersum HOM05D002859 ORTHO05D003120 5.3e-10 68.9 49 73.5
Nitab4.5_0001106g0150 Nicotiana tabacum HOM05D002859 ORTHO05D003120 5.3e-10 68.9 57 66.7
Nitab4.5_0009853g0030 Nicotiana tabacum HOM05D002859 ORTHO05D003120 5.3e-10 68.9 58 65.5
Sp5g26480 Schrenkiella parvula HOM05D002859 ORTHO05D003120 5.3e-10 68.9 56 64.3
Haze_14010 Corylus avellana HOM05D002859 ORTHO05D003120 9.1e-10 68.2 57 61.4
HanXRQChr09g0266881 Helianthus annuus HOM05D002859 ORTHO05D003120 9.1e-10 68.2 63 57.1
MBI06_g47881_MAGBIO Magnolia biondii HOM05D002859 ORTHO05D003120 9.1e-10 68.2 62 58.1
Nn5g27200 Nelumbo nucifera HOM05D002859 ORTHO05D003120 9.1e-10 68.2 46 67.4
ATR1089G066 Amborella trichopoda HOM05D002859 ORTHO05D003120 2.7e-09 66.6 49 65.3
AUR62013398 Chenopodium quinoa HOM05D002859 ORTHO05D003120 2.7e-09 66.6 50 68.0
Manes.05G123347 Manihot esculenta HOM05D002859 ORTHO05D003120 2.7e-09 66.6 42 76.2
Zm00001eb366350 Zea mays HOM05D002859 ORTHO05D003120 2.7e-09 66.6 61 49.2
Prupe.8G001500 Prunus persica HOM05D002859 ORTHO05D003120 7.7e-09 65.1 52 63.5
FAN21G0151 Fragaria x ananassa HOM05D002859 ORTHO05D003120 1.0e-08 64.7 109 35.8
MD05G1000800 Malus domestica HOM05D002859 ORTHO05D003120 1.0e-08 64.7 63 57.1
PSO782G5460 Papaver somniferum HOM05D002859 ORTHO05D003120 1.0e-08 64.7 120 41.7
SGA_v2.0_scaffold118G32642 Striga asiatica HOM05D002859 ORTHO05D003120 1.3e-08 64.3 51 60.8
CANSAT54G1349 Cannabis sativa HOM05D002859 ORTHO05D003120 2.9e-08 63.2 45 68.9
FvH4_2g00170 Fragaria vesca HOM05D002859 ORTHO05D003120 2.9e-08 63.2 51 64.7
FAN24G1423 Fragaria x ananassa HOM05D002859 ORTHO05D003120 2.9e-08 63.2 51 64.7
QL09p001171 Quercus lobata HOM05D002859 ORTHO05D003120 2.9e-08 63.2 43 62.8
Glyma.09G234000 Glycine max HOM05D002859 ORTHO05D003120 3.8e-08 62.8 62 54.8
FAN25G0127 Fragaria x ananassa HOM05D002859 ORTHO05D003120 5.0e-08 62.4 49 61.2
Zm00001eb145940 Zea mays HOM05D002859 ORTHO05D003120 5.0e-08 62.4 61 44.3
Aqoxy6G00036 Aquilegia oxysepala HOM05D002859 ORTHO05D003120 1.5e-07 60.8 42 66.7
PSO063G7280 Papaver somniferum HOM05D002859 ORTHO05D003120 1.5e-07 60.8 66 51.5
HPP92_001196 Vanilla planifolia HOM05D002859 ORTHO05D003120 4.2e-07 59.3 42 64.3
FAN16G3232 Fragaria x ananassa HOM05D002859 ORTHO05D003120 5.5e-07 58.9 49 59.2
AagrBONN_evm.TU.Sc2ySwM_117.3205 Anthoceros agrestis HOM05D002859 ORTHO05D003120 2.7e-06 56.6 49 46.9
SMO358G0157 Selaginella moellendorffii HOM05D002859 ORTHO05D003120 3.6e-06 56.2 70 35.7
Mapoly0077s0052 Marchantia polymorpha HOM05D002859 ORTHO05D003120 4.7e-06 55.8 113 33.6


User provided reference genes

Program Settings