Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.4e-106 389.8 221 100.0
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 8.2e-83 310.8 187 80.2
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 2.4e-82 309.3 187 79.7
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 5.1e-77 291.6 155 83.9
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 8.8e-77 290.8 156 84.6
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 2.0e-76 289.7 156 82.7
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 5.7e-76 288.1 155 83.9
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 1.3e-75 287.0 186 73.7
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 1.3e-75 287.0 155 81.3
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 2.2e-75 286.2 154 84.4
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 2.2e-75 286.2 155 81.9
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 2.2e-75 286.2 156 83.3
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 3.7e-75 285.4 152 84.9
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 1.1e-74 283.9 155 82.6
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 1.4e-74 283.5 152 82.9
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 1.8e-74 283.1 158 83.5
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 2.4e-74 282.7 153 84.3
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 2.4e-74 282.7 154 83.8
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 4.1e-74 282.0 155 80.0
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 5.3e-74 281.6 155 80.6
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 6.9e-74 281.2 151 82.8
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 9.1e-74 280.8 155 81.3
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 2.0e-73 279.6 155 82.6
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 3.4e-73 278.9 156 80.8
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 3.4e-73 278.9 151 83.4
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 7.7e-73 277.7 154 81.2
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 1.0e-72 277.3 155 80.0
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 1.0e-72 277.3 155 80.0
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 1.3e-72 276.9 151 81.5
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 2.2e-72 276.2 154 79.9
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 2.2e-72 276.2 155 78.7
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 2.9e-72 275.8 151 80.8
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 3.8e-72 275.4 155 78.7
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 6.5e-72 274.6 155 77.4
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 8.5e-72 274.2 156 81.4
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 8.5e-72 274.2 155 78.7
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 8.5e-72 274.2 155 78.7
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.1e-71 273.9 156 80.1
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 1.4e-71 273.5 157 79.6
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 1.9e-71 273.1 153 82.4
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 2.5e-71 272.7 158 78.5
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 7.2e-71 271.2 163 77.3
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 1.2e-70 270.4 159 75.5
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 4.7e-70 268.5 158 77.8
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 1.4e-69 266.9 158 79.1
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 1.4e-69 266.9 152 78.9
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 8.8e-69 264.2 154 74.0
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.1e-68 263.8 145 80.7
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 1.5e-68 263.5 155 74.8
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 2.0e-68 263.1 150 76.7
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 2.0e-68 263.1 154 73.4
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 2.6e-68 262.7 128 94.5
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 3.3e-68 262.3 151 77.5
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 4.4e-68 261.9 151 77.5
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 4.4e-68 261.9 178 69.7
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 5.7e-68 261.5 154 72.7
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 1.7e-67 260.0 154 76.0
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 2.8e-67 259.2 152 76.3
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 7.0e-66 254.6 158 74.7
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 7.0e-66 254.6 152 72.4
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.6e-65 253.4 149 75.2
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 2.6e-65 252.7 149 75.2
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 3.5e-65 252.3 151 74.2
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 3.5e-65 252.3 151 74.2
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 3.5e-65 252.3 154 73.4
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 4.5e-65 251.9 149 74.5
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 7.7e-65 251.1 128 88.3
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 7.7e-65 251.1 154 78.6
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 1.0e-64 250.8 151 74.2
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.3e-64 250.4 156 72.4
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.3e-64 250.4 209 59.3
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 1.7e-64 250.0 148 79.1
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 2.9e-64 249.2 149 73.8
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 3.8e-64 248.8 153 72.5
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 5.0e-64 248.4 139 80.6
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 5.0e-64 248.4 131 84.7
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 8.5e-64 247.7 142 78.2
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 2.5e-63 246.1 161 70.8
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 5.5e-63 245.0 149 74.5
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 3.6e-62 242.3 210 59.0
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 4.7e-62 241.9 153 69.3
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 6.1e-62 241.5 149 70.5
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 8.0e-62 241.1 140 75.0
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 4.0e-61 238.8 150 70.7
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 5.2e-61 238.4 129 82.2
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.3e-59 233.8 112 90.2
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 1.7e-59 233.4 157 63.1
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 4.8e-59 231.9 172 64.0
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 8.2e-59 231.1 152 69.7
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.4e-58 230.3 157 61.1
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.4e-58 230.3 199 56.8
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 1.4e-58 230.3 131 77.9
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 4.1e-58 228.8 157 62.4
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 7.0e-58 228.0 177 64.4
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 9.1e-58 227.6 157 61.8
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.0e-56 224.2 154 62.3
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.0e-56 224.2 157 62.4
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.7e-56 223.4 160 59.4
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.2e-56 223.0 154 61.7
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 2.9e-56 222.6 182 62.6
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 8.5e-56 221.1 113 81.4
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 3.2e-55 219.2 140 71.4
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 9.4e-55 217.6 157 59.9
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 9.4e-55 217.6 113 85.8
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 1.4e-53 213.8 187 57.2
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 1.4e-53 213.8 113 79.6
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 1.8e-53 213.4 126 75.4
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.2e-52 210.7 151 58.9
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 2.0e-52 209.9 159 57.9
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 2.6e-52 209.5 138 68.8
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 4.4e-52 208.8 151 58.9
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 9.8e-52 207.6 165 55.8
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 9.8e-52 207.6 148 60.1
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 1.7e-51 206.8 151 57.0
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 3.1e-50 202.6 151 57.0
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 1.2e-49 200.7 147 59.2
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.0e-48 197.6 167 52.1
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 5.0e-48 195.3 145 55.9
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 8.5e-48 194.5 95 88.4
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 1.1e-47 194.1 154 63.6
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.9e-47 193.4 151 55.6
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 5.5e-47 191.8 151 54.3
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 2.7e-46 189.5 143 56.6
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 3.6e-46 189.1 145 53.1
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 3.6e-46 189.1 145 53.1
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 4.7e-46 188.7 145 53.1
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 4.7e-46 188.7 145 53.1
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 4.7e-46 188.7 96 86.5
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.0e-45 187.6 167 49.1
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 1.0e-45 187.6 167 49.1
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 1.0e-45 187.6 145 55.2
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.8e-45 186.8 167 49.1
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 1.8e-45 186.8 104 79.8
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 2.3e-45 186.4 108 75.0
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.0e-44 183.3 124 71.0
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 4.4e-44 182.2 187 53.5
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 9.8e-44 181.0 136 57.4
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.3e-43 180.6 143 65.0
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 4.9e-43 178.7 143 51.7
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 1.8e-42 176.8 163 55.8
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 3.3e-39 166.0 121 54.5
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 3.0e-37 159.5 119 54.6
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 4.0e-37 159.1 96 66.7
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 1.5e-36 157.1 84 85.7
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 2.2e-35 153.3 154 52.6
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 8.3e-35 151.4 88 76.1
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 1.1e-34 151.0 149 45.0
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 9.2e-34 147.9 146 54.1
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 1.6e-33 147.1 79 81.0
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 3.9e-32 142.5 99 63.6
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 2.5e-31 139.8 142 53.5
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 2.8e-30 136.3 64 93.8
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.8e-29 133.7 157 44.6
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 1.8e-29 133.7 137 43.8
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 5.2e-29 132.1 65 92.3
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 1.6e-25 120.6 68 75.0
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 2.7e-25 119.8 81 58.0
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 3.5e-25 119.4 137 40.1
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 2.5e-23 113.2 69 69.6
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 3.5e-17 92.8 89 52.8
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 4.6e-17 92.4 56 76.8
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 9.5e-15 84.7 85 51.8
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 1.4e-13 80.9 83 48.2
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 1.2e-12 77.8 46 69.6
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 1.7e-11 73.9 53 54.7
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 6.4e-11 72.0 51 54.9
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 6.4e-11 72.0 51 54.9
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 1.4e-10 70.9 49 57.1
CSS0034791 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 9.6e-07 58.2 61 52.5
CSS0043421 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 9.6e-07 58.2 61 52.5
BolC8t52839H Brassica oleracea HOM05D004068 ORTHO05D004700 2.8e-06 56.6 44 61.4


User provided reference genes

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