Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008394 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D000903 2.1e-42 175.3 88 100.0
CSS0041829 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D000903 6.4e-31 137.1 89 85.4
CSS0005440 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D000903 2.2e-18 95.5 127 52.8
CSS0001316 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D000903 1.7e-15 85.9 65 73.8
CSS0016441 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D000903 8.5e-15 83.6 65 72.3
Rhsim02G0011200 Rhododendron simsii HOM05D000319 ORTHO05D000903 2.5e-11 72.0 65 63.1
Dinv38300 Davidia involucrata HOM05D000319 ORTHO05D000903 3.3e-11 71.6 65 61.5
vmacro15243 Vaccinium macrocarpon HOM05D000319 ORTHO05D000903 4.3e-11 71.2 65 60.0
Rhsim02G0010100 Rhododendron simsii HOM05D000319 ORTHO05D000903 7.4e-11 70.5 65 61.5
Rhsim02G0011700 Rhododendron simsii HOM05D000319 ORTHO05D000903 6.3e-10 67.4 62 61.3
Nitab4.5_0012427g0010 Nicotiana tabacum HOM05D000319 ORTHO05D000903 2.4e-09 65.5 64 57.8
Sopen01g028880 Solanum pennellii HOM05D000319 ORTHO05D000903 2.4e-09 65.5 58 62.1
GSVIVG01017740001 Vitis vinifera HOM05D000319 ORTHO05D000903 3.1e-09 65.1 63 58.7
Duzib151G0607 Durio zibethinus HOM05D000319 ORTHO05D000903 5.3e-09 64.3 65 52.3
CANSAT78G1438 Cannabis sativa HOM05D000319 ORTHO05D000903 2.9e-07 58.5 63 52.4
Lj6A673T96 Lonicera japonica HOM05D000319 ORTHO05D000903 2.9e-07 58.5 65 49.2
Oeu021104.2 Olea europaea HOM05D000319 ORTHO05D000903 2.9e-07 58.5 63 49.2
arahy.Tifrunner.gnm1.ann1.18U4K7 Arachis hypogaea HOM05D000319 ORTHO05D000903 3.8e-07 58.2 63 52.4
arahy.Tifrunner.gnm1.ann1.A4TJW4 Arachis hypogaea HOM05D000319 ORTHO05D000903 3.8e-07 58.2 63 52.4
arahy.Tifrunner.gnm1.ann1.C5NHEB Arachis hypogaea HOM05D000319 ORTHO05D000903 3.8e-07 58.2 63 52.4
arahy.Tifrunner.gnm1.ann1.D3FQJ1 Arachis hypogaea HOM05D000319 ORTHO05D000903 3.8e-07 58.2 63 52.4
CSS0003266 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D000903 3.8e-07 58.2 63 52.4
CSS0007353 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D000903 3.8e-07 58.2 63 52.4
Dinv38301 Davidia involucrata HOM05D000319 ORTHO05D000903 3.8e-07 58.2 63 52.4
Glyma.09G046500 Glycine max HOM05D000319 ORTHO05D000903 3.8e-07 58.2 63 52.4
Glyma.15G154000 Glycine max HOM05D000319 ORTHO05D000903 3.8e-07 58.2 63 52.4
Glyma.17G025200 Glycine max HOM05D000319 ORTHO05D000903 3.8e-07 58.2 63 52.4
Lj6g0024853 Lotus japonicus HOM05D000319 ORTHO05D000903 3.8e-07 58.2 63 52.4
Lalb_Chr12g0196521 Lupinus albus HOM05D000319 ORTHO05D000903 3.8e-07 58.2 63 52.4
Lalb_Chr20g0114481 Lupinus albus HOM05D000319 ORTHO05D000903 3.8e-07 58.2 63 52.4
Medtr2g437390 Medicago truncatula HOM05D000319 ORTHO05D000903 3.8e-07 58.2 63 52.4
Oeu023293.3 Olea europaea HOM05D000319 ORTHO05D000903 3.8e-07 58.2 63 54.0
Phvul.009G246300 Phaseolus vulgaris HOM05D000319 ORTHO05D000903 3.8e-07 58.2 63 52.4
VMungo1309G1220 Vigna mungo HOM05D000319 ORTHO05D000903 3.8e-07 58.2 63 52.4
Aqoxy2G03040 Aquilegia oxysepala HOM05D000319 ORTHO05D000903 5.0e-07 57.8 65 50.8
CSS0022272 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D000903 5.0e-07 57.8 63 52.4
Glyma.07G249100 Glycine max HOM05D000319 ORTHO05D000903 5.0e-07 57.8 63 50.8
Phvul.003G103300 Phaseolus vulgaris HOM05D000319 ORTHO05D000903 5.0e-07 57.8 63 52.4
RcHm_v2.0_Chr4g0421701 Rosa chinensis HOM05D000319 ORTHO05D000903 5.0e-07 57.8 63 52.4
TPR.G35032 Trifolium pratense HOM05D000319 ORTHO05D000903 5.0e-07 57.8 63 52.4
VMungo1215G2210 Vigna mungo HOM05D000319 ORTHO05D000903 5.0e-07 57.8 63 52.4
Atru.chr4.2808 Acer truncatum HOM05D000319 ORTHO05D000903 6.5e-07 57.4 63 52.4
arahy.Tifrunner.gnm1.ann1.5LU64F Arachis hypogaea HOM05D000319 ORTHO05D000903 6.5e-07 57.4 63 50.8
CAN.G556.9 Capsicum annuum HOM05D000319 ORTHO05D000903 6.5e-07 57.4 63 52.4
ClCG06G005250 Citrullus lanatus HOM05D000319 ORTHO05D000903 6.5e-07 57.4 63 52.4
MELO3C021345.2 Cucumis melo HOM05D000319 ORTHO05D000903 6.5e-07 57.4 63 52.4
CsaV3_6G017300 Cucumis sativus L. HOM05D000319 ORTHO05D000903 6.5e-07 57.4 63 52.4
Prupe.1G138700 Prunus persica HOM05D000319 ORTHO05D000903 6.5e-07 57.4 63 52.4
Manes.03G193200 Manihot esculenta HOM05D000319 ORTHO05D000903 8.5e-07 57.0 63 52.4
Sed0007113 Sechium edule HOM05D000319 ORTHO05D000903 8.5e-07 57.0 63 52.4
Sed0015748 Sechium edule HOM05D000319 ORTHO05D000903 8.5e-07 57.0 63 52.4
Sed0016240 Sechium edule HOM05D000319 ORTHO05D000903 8.5e-07 57.0 63 52.4
Duzib151G0035 Durio zibethinus HOM05D000319 ORTHO05D000903 1.1e-06 56.6 63 52.4
Gohir.D10G169400 Gossypium hirsutum HOM05D000319 ORTHO05D000903 1.1e-06 56.6 63 52.4
Gorai.011G188900 Gossypium raimondii HOM05D000319 ORTHO05D000903 1.1e-06 56.6 63 52.4
HanXRQChr13g0409831 Helianthus annuus HOM05D000319 ORTHO05D000903 1.1e-06 56.6 63 52.4
Lsat_1_v5_gn_5_49221 Lactuca sativa HOM05D000319 ORTHO05D000903 1.1e-06 56.6 63 52.4
Sc19g0005080 Simmondsia chinensis HOM05D000319 ORTHO05D000903 1.1e-06 56.6 63 52.4
Thecc.04G282500 Theobroma cacao HOM05D000319 ORTHO05D000903 1.1e-06 56.6 63 52.4
MSTRG.10084 Avicennia marina HOM05D000319 ORTHO05D000903 1.4e-06 56.2 65 49.2
CiPaw.02G084200 Carya illinoinensis HOM05D000319 ORTHO05D000903 1.4e-06 56.2 62 53.2
Gohir.A01G030451 Gossypium hirsutum HOM05D000319 ORTHO05D000903 1.4e-06 56.2 63 52.4
Gohir.D01G023466 Gossypium hirsutum HOM05D000319 ORTHO05D000903 1.4e-06 56.2 63 52.4
Gorai.002G027800 Gossypium raimondii HOM05D000319 ORTHO05D000903 1.4e-06 56.2 63 52.4
PSO210G6328 Papaver somniferum HOM05D000319 ORTHO05D000903 1.4e-06 56.2 62 53.2
PSO832G1154 Papaver somniferum HOM05D000319 ORTHO05D000903 1.4e-06 56.2 62 53.2
COL.COLO4_04603 Corchorus olitorius HOM05D000319 ORTHO05D000903 1.9e-06 55.8 64 45.3
Dinv44395 Davidia involucrata HOM05D000319 ORTHO05D000903 1.9e-06 55.8 63 50.8
Migut.G00178 Erythranthe guttata HOM05D000319 ORTHO05D000903 1.9e-06 55.8 62 53.2
Gohir.A10G163000 Gossypium hirsutum HOM05D000319 ORTHO05D000903 1.9e-06 55.8 63 52.4
HanXRQChr03g0079981 Helianthus annuus HOM05D000319 ORTHO05D000903 1.9e-06 55.8 62 53.2
Manes.15G013800 Manihot esculenta HOM05D000319 ORTHO05D000903 1.9e-06 55.8 63 50.8
Nitab4.5_0003256g0030 Nicotiana tabacum HOM05D000319 ORTHO05D000903 1.9e-06 55.8 63 50.8
Nitab4.5_0005595g0010 Nicotiana tabacum HOM05D000319 ORTHO05D000903 1.9e-06 55.8 63 50.8
Potri.008G217300 Populus trichocarpa HOM05D000319 ORTHO05D000903 1.9e-06 55.8 63 50.8
Potri.008G224075 Populus trichocarpa HOM05D000319 ORTHO05D000903 1.9e-06 55.8 63 50.8
Sabra08G0154600 Salix brachista HOM05D000319 ORTHO05D000903 1.9e-06 55.8 63 50.8
Sabra10G0015100 Salix brachista HOM05D000319 ORTHO05D000903 1.9e-06 55.8 63 50.8
TAR633G1636 Trochodendron aralioides HOM05D000319 ORTHO05D000903 1.9e-06 55.8 62 50.0
Gohir.D02G053800 Gossypium hirsutum HOM05D000319 ORTHO05D000903 2.5e-06 55.5 65 40.0
Gorai.005G059400 Gossypium raimondii HOM05D000319 ORTHO05D000903 2.5e-06 55.5 65 40.0
Lalb_Chr07g0177651 Lupinus albus HOM05D000319 ORTHO05D000903 2.5e-06 55.5 63 50.8
MBI19_g23989_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D000903 2.5e-06 55.5 62 51.6
Oeu021106.1 Olea europaea HOM05D000319 ORTHO05D000903 2.5e-06 55.5 63 50.8
Oeu021107.1 Olea europaea HOM05D000319 ORTHO05D000903 2.5e-06 55.5 63 50.8
Ca_02417_v3 Cicer arietinum L. HOM05D000319 ORTHO05D000903 3.2e-06 55.1 60 51.7
Duzib052G0656 Durio zibethinus HOM05D000319 ORTHO05D000903 3.2e-06 55.1 65 44.6
QL06p008427 Quercus lobata HOM05D000319 ORTHO05D000903 3.2e-06 55.1 62 51.6
Aqoxy5G00654 Aquilegia oxysepala HOM05D000319 ORTHO05D000903 4.2e-06 54.7 62 51.6
Ciclev10004406m.g Citrus clementina HOM05D000319 ORTHO05D000903 4.2e-06 54.7 63 49.2
Migut.N00104 Erythranthe guttata HOM05D000319 ORTHO05D000903 4.2e-06 54.7 63 50.8
Medtr4g119413 Medicago truncatula HOM05D000319 ORTHO05D000903 4.2e-06 54.7 63 47.6
Nn4g25931 Nelumbo nucifera HOM05D000319 ORTHO05D000903 4.2e-06 54.7 62 51.6
Psat1g152360 Pisum sativum HOM05D000319 ORTHO05D000903 4.2e-06 54.7 62 51.6
Sed0015196 Sechium edule HOM05D000319 ORTHO05D000903 4.2e-06 54.7 63 49.2
TAR362G0414 Trochodendron aralioides HOM05D000319 ORTHO05D000903 4.2e-06 54.7 62 51.6
CiPaw.01G150100 Carya illinoinensis HOM05D000319 ORTHO05D000903 5.5e-06 54.3 62 51.6
ClCG05G006010 Citrullus lanatus HOM05D000319 ORTHO05D000903 5.5e-06 54.3 62 51.6
DCAR_027084 Daucus carota HOM05D000319 ORTHO05D000903 5.5e-06 54.3 62 51.6
Lalb_Chr13g0303721 Lupinus albus HOM05D000319 ORTHO05D000903 5.5e-06 54.3 63 49.2
MD16G1171700 Malus domestica HOM05D000319 ORTHO05D000903 5.5e-06 54.3 63 49.2
Peaxi162Scf01067g00032 Petunia axillaris HOM05D000319 ORTHO05D000903 5.5e-06 54.3 55 58.2
Rhsim02G0011800 Rhododendron simsii HOM05D000319 ORTHO05D000903 5.5e-06 54.3 62 51.6
CDE01G0396 Ceratophyllum demersum HOM05D000319 ORTHO05D000903 7.2e-06 53.9 63 49.2
Lj6C673G12 Lonicera japonica HOM05D000319 ORTHO05D000903 7.2e-06 53.9 63 49.2
Sopen01g028920 Solanum pennellii HOM05D000319 ORTHO05D012272 7.2e-06 53.9 72 44.4
CSS0026292 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D000903 9.4e-06 53.5 61 50.8
Cc03_g02030 Coffea canephora HOM05D000319 ORTHO05D000903 9.4e-06 53.5 63 49.2
COL.COLO4_13896 Corchorus olitorius HOM05D000319 ORTHO05D000903 9.4e-06 53.5 63 49.2
Eucgr.B01285 Eucalyptus grandis HOM05D000319 ORTHO05D000903 9.4e-06 53.5 63 49.2
Gohir.A02G048500 Gossypium hirsutum HOM05D000319 ORTHO05D000903 9.4e-06 53.5 65 38.5
HanXRQChr03g0079961 Helianthus annuus HOM05D000319 ORTHO05D000903 9.4e-06 53.5 62 50.0
Lsat_1_v5_gn_3_24140 Lactuca sativa HOM05D000319 ORTHO05D000903 9.4e-06 53.5 63 49.2
Lj4g0007474 Lotus japonicus HOM05D000319 ORTHO05D000903 9.4e-06 53.5 62 50.0
MD13G1170300 Malus domestica HOM05D000319 ORTHO05D000903 9.4e-06 53.5 63 49.2
Nn4g25949 Nelumbo nucifera HOM05D000319 ORTHO05D000903 9.4e-06 53.5 79 44.3
Nitab4.5_0001697g0110 Nicotiana tabacum HOM05D000319 ORTHO05D000903 9.4e-06 53.5 63 47.6
QL06p008414 Quercus lobata HOM05D000319 ORTHO05D000903 9.4e-06 53.5 62 48.4
SGA_v2.0_scaffold86G26892 Striga asiatica HOM05D000319 ORTHO05D000903 9.4e-06 53.5 63 49.2
HPP92_017215 Vanilla planifolia HOM05D000319 ORTHO05D000903 9.4e-06 53.5 62 51.6
GSVIVG01010966001 Vitis vinifera HOM05D000319 ORTHO05D000903 9.4e-06 53.5 63 49.2
GSVIVG01017738001 Vitis vinifera HOM05D000319 ORTHO05D000903 9.4e-06 53.5 62 51.6


User provided reference genes

Program Settings