Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008383 Camellia sinensis var. sinensis HOM05D015037 ORTHO05D111559 1.3e-64 249.6 132 100.0
CSS0036443 Camellia sinensis var. sinensis HOM05D015037 ORTHO05D110285 6.3e-38 161.0 128 75.0
CSS0037030 Camellia sinensis var. sinensis HOM05D000287 ORTHO05D000319 3.1e-13 79.0 49 69.4
CSS0009226 Camellia sinensis var. sinensis HOM05D015037 ORTHO05D111017 9.1e-13 77.4 83 57.8
Rhsim01G0106800 Rhododendron simsii HOM05D000287 ORTHO05D000319 9.1e-13 77.4 41 75.6
CSS0047748 Camellia sinensis var. sinensis HOM05D015037 ORTHO05D111691 1.0e-11 73.9 62 62.9
Actinidia02466 Actinidia chinensis HOM05D000287 ORTHO05D000319 5.0e-11 71.6 47 66.0
Solyc05g021390.4 Solanum lycopersicum HOM05D000287 ORTHO05D000319 1.9e-10 69.7 41 70.7
Sopen05g017610 Solanum pennellii HOM05D000287 ORTHO05D000319 1.9e-10 69.7 41 70.7
vmacro20750 Vaccinium macrocarpon HOM05D000287 ORTHO05D000319 1.9e-10 69.7 41 65.9
PGSC0003DMG400007565 Solanum tuberosum HOM05D000287 ORTHO05D000319 7.2e-10 67.8 41 68.3
CSS0003609 Camellia sinensis var. sinensis HOM05D015037 ORTHO05D112905 2.7e-09 65.9 50 70.0
CSS0035713 Camellia sinensis var. sinensis HOM05D015037 ORTHO05D112293 2.7e-09 65.9 49 71.4
Rhsim01G0107700 Rhododendron simsii HOM05D000287 ORTHO05D000319 2.7e-09 65.9 41 65.9
Actinidia38533 Actinidia chinensis HOM05D000287 ORTHO05D000319 3.6e-09 65.5 41 65.9
MSTRG.26514 Avicennia marina HOM05D000287 ORTHO05D000319 3.6e-09 65.5 41 63.4
CAN.G218.8 Capsicum annuum HOM05D000287 ORTHO05D000319 4.7e-09 65.1 41 63.4
Dinv12622 Davidia involucrata HOM05D000287 ORTHO05D000319 4.7e-09 65.1 41 65.9
Lj5A798T57 Lonicera japonica HOM05D000287 ORTHO05D000319 4.7e-09 65.1 41 61.0
Lj5C799G2 Lonicera japonica HOM05D000287 ORTHO05D000319 4.7e-09 65.1 41 63.4
Rhsim01G0107600 Rhododendron simsii HOM05D000287 ORTHO05D000319 4.7e-09 65.1 41 65.9
Rhsim04G0124400 Rhododendron simsii HOM05D000287 ORTHO05D000319 4.7e-09 65.1 66 45.5
RhsimUnG0150100 Rhododendron simsii HOM05D000287 ORTHO05D000319 4.7e-09 65.1 41 65.9
Nn8g41155 Nelumbo nucifera HOM05D000287 ORTHO05D000319 6.1e-09 64.7 48 60.4
Nn8g41167 Nelumbo nucifera HOM05D000287 ORTHO05D000319 6.1e-09 64.7 48 60.4
Peaxi162Scf00322g01519 Petunia axillaris HOM05D000287 ORTHO05D000319 6.1e-09 64.7 41 63.4
unitig_578.g15868 Utricularia gibba HOM05D000287 ORTHO05D000319 6.1e-09 64.7 48 60.4
CSS0009618 Camellia sinensis var. sinensis HOM05D000287 ORTHO05D000319 8.0e-09 64.3 41 63.4
Lj5A798G50 Lonicera japonica HOM05D000287 ORTHO05D000319 8.0e-09 64.3 41 61.0
Lj5A800G22 Lonicera japonica HOM05D000287 ORTHO05D000319 8.0e-09 64.3 41 65.9
Lj5A801G35 Lonicera japonica HOM05D000287 ORTHO05D000319 8.0e-09 64.3 47 59.6
SalBow5G1286 Salvia bowleyana HOM05D000287 ORTHO05D000319 8.0e-09 64.3 41 63.4
Gohir.A08G014900 Gossypium hirsutum HOM05D000287 ORTHO05D000319 1.0e-08 63.9 41 65.9
Manes.02G223800 Manihot esculenta HOM05D000287 ORTHO05D000319 1.0e-08 63.9 41 63.4
MSTRG.19405 Avicennia marina HOM05D000287 ORTHO05D000319 1.4e-08 63.5 41 63.4
Migut.L01923 Erythranthe guttata HOM05D000287 ORTHO05D000319 1.4e-08 63.5 41 63.4
PGR044G1009 Punica granatum HOM05D000287 ORTHO05D000319 1.4e-08 63.5 41 61.0
QL05p071789 Quercus lobata HOM05D000287 ORTHO05D000319 1.4e-08 63.5 41 65.9
QL05p085702 Quercus lobata HOM05D000287 ORTHO05D000319 1.4e-08 63.5 41 65.9
QL08p016784 Quercus lobata HOM05D000287 ORTHO05D000319 1.4e-08 63.5 41 65.9
Solyc07g042880.1 Solanum lycopersicum HOM05D000287 ORTHO05D000319 1.4e-08 63.5 41 63.4
vmacro08913 Vaccinium macrocarpon HOM05D000287 ORTHO05D000319 1.4e-08 63.5 64 45.3
Duzib192G0053 Durio zibethinus HOM05D000287 ORTHO05D000319 1.8e-08 63.2 41 63.4
Eucgr.C02161 Eucalyptus grandis HOM05D000287 ORTHO05D000319 1.8e-08 63.2 41 58.5
Nn5g26979 Nelumbo nucifera HOM05D000287 ORTHO05D000319 1.8e-08 63.2 48 58.3
PGSC0003DMG400013568 Solanum tuberosum HOM05D000287 ORTHO05D000319 1.8e-08 63.2 41 65.9
vmacro20752 Vaccinium macrocarpon HOM05D000287 ORTHO05D000319 1.8e-08 63.2 41 63.4
vmacro20753 Vaccinium macrocarpon HOM05D000287 ORTHO05D000319 1.8e-08 63.2 41 63.4
CSS0011234 Camellia sinensis var. sinensis HOM05D015037 ORTHO05D109164 2.3e-08 62.8 52 65.4
CSS0012671 Camellia sinensis var. sinensis HOM05D000287 ORTHO05D000319 2.3e-08 62.8 41 61.0
Migut.J00852 Erythranthe guttata HOM05D000287 ORTHO05D000319 2.3e-08 62.8 41 63.4
Lj5C810T1 Lonicera japonica HOM05D000287 ORTHO05D000319 2.3e-08 62.8 36 69.4
Thecc.09G000600 Theobroma cacao HOM05D000287 ORTHO05D000319 2.3e-08 62.8 48 58.3
CSS0042356 Camellia sinensis var. sinensis HOM05D015037 ORTHO05D111152 3.0e-08 62.4 52 65.4
Haze_19083 Corylus avellana HOM05D000287 ORTHO05D000319 3.0e-08 62.4 41 61.0
Duzib170G0464 Durio zibethinus HOM05D000287 ORTHO05D000319 3.0e-08 62.4 41 65.9
Hma1.2p1_0394F.1_g143100 Hydrangea macrophylla HOM05D000287 ORTHO05D000319 3.0e-08 62.4 41 61.0
Lj5A809T66 Lonicera japonica HOM05D000287 ORTHO05D000319 3.0e-08 62.4 48 56.2
Manes.10G087400 Manihot esculenta HOM05D000287 ORTHO05D000319 3.0e-08 62.4 41 63.4
Rhsim01G0107500 Rhododendron simsii HOM05D000287 ORTHO05D000319 3.0e-08 62.4 41 61.0
Hund03219 Selenicereus undatus HOM05D000287 ORTHO05D000319 3.0e-08 62.4 41 61.0
Sopen07g022480 Solanum pennellii HOM05D000287 ORTHO05D000319 3.0e-08 62.4 41 61.0
TAR383G0654 Trochodendron aralioides HOM05D000287 ORTHO05D000319 3.0e-08 62.4 48 54.2
vmacro20754 Vaccinium macrocarpon HOM05D000287 ORTHO05D000319 3.0e-08 62.4 41 63.4
Cpa.g.sc91.63 Carica papaya HOM05D000287 ORTHO05D000319 4.0e-08 62.0 41 65.9
Nitab4.5_0000807g0070 Nicotiana tabacum HOM05D000287 ORTHO05D000319 4.0e-08 62.0 41 58.5
Peaxi162Scf00474g00416 Petunia axillaris HOM05D000287 ORTHO05D000319 4.0e-08 62.0 41 58.5
Rhsim01G0107800 Rhododendron simsii HOM05D000287 ORTHO05D000319 4.0e-08 62.0 41 63.4
Thecc.09G205000 Theobroma cacao HOM05D000287 ORTHO05D000319 4.0e-08 62.0 41 65.9
TAR383G0206 Trochodendron aralioides HOM05D000287 ORTHO05D000319 4.0e-08 62.0 41 61.0
Peaxi162Scf00047g02457 Petunia axillaris HOM05D000287 ORTHO05D000319 5.2e-08 61.6 41 61.0
QL11p007332 Quercus lobata HOM05D000287 ORTHO05D000319 5.2e-08 61.6 41 58.5
TAR636G0154 Trochodendron aralioides HOM05D000287 ORTHO05D000319 5.2e-08 61.6 41 58.5
TAR636G0895 Trochodendron aralioides HOM05D000287 ORTHO05D000319 5.2e-08 61.6 41 58.5
TAR636G3185 Trochodendron aralioides HOM05D000287 ORTHO05D000319 5.2e-08 61.6 41 58.5
CAN.G503.19 Capsicum annuum HOM05D000287 ORTHO05D000319 6.7e-08 61.2 41 61.0
FvH4_4g00250 Fragaria vesca HOM05D000287 ORTHO05D000319 6.7e-08 61.2 41 58.5
FAN12G2761 Fragaria x ananassa HOM05D000287 ORTHO05D000319 6.7e-08 61.2 41 58.5
FAN17G1160 Fragaria x ananassa HOM05D000287 ORTHO05D000319 6.7e-08 61.2 41 58.5
FAN22G2098 Fragaria x ananassa HOM05D000287 ORTHO05D000319 6.7e-08 61.2 41 58.5
Gohir.D08G025500 Gossypium hirsutum HOM05D000287 ORTHO05D000319 6.7e-08 61.2 41 63.4
Gorai.004G020800 Gossypium raimondii HOM05D000287 ORTHO05D000319 6.7e-08 61.2 41 63.4
Lj1g0028224 Lotus japonicus HOM05D000287 ORTHO05D000319 6.7e-08 61.2 41 56.1
Nitab4.5_0005925g0010 Nicotiana tabacum HOM05D000287 ORTHO05D000319 6.7e-08 61.2 41 58.5
Oeu008633.1 Olea europaea HOM05D000287 ORTHO05D000319 6.7e-08 61.2 41 61.0
PGSC0003DMG400043512 Solanum tuberosum HOM05D000287 ORTHO05D000319 6.7e-08 61.2 41 58.5
Thecc.06G052700 Theobroma cacao HOM05D000287 ORTHO05D000319 6.7e-08 61.2 41 56.1
Hund05663 Selenicereus undatus HOM05D000287 ORTHO05D000319 8.8e-08 60.8 41 68.3
CiPaw.15G162400 Carya illinoinensis HOM05D000287 ORTHO05D000319 1.2e-07 60.5 41 56.1
AUR62027979 Chenopodium quinoa HOM05D000287 ORTHO05D000319 1.2e-07 60.5 41 58.5
Duzib235G0797 Durio zibethinus HOM05D000287 ORTHO05D000319 1.2e-07 60.5 41 58.5
Nitab4.5_0000170g0130 Nicotiana tabacum HOM05D000287 ORTHO05D000319 1.2e-07 60.5 41 58.5
Oeu008635.1 Olea europaea HOM05D000287 ORTHO05D000319 1.2e-07 60.5 41 53.7
Actinidia07561 Actinidia chinensis HOM05D000287 ORTHO05D000319 1.5e-07 60.1 41 58.5
EL10Ac2g03618 Beta vulgaris HOM05D000287 ORTHO05D000319 1.5e-07 60.1 41 58.5
EL10Ac7g18120 Beta vulgaris HOM05D000287 ORTHO05D000319 1.5e-07 60.1 41 63.4
CSS0001973 Camellia sinensis var. sinensis HOM05D000287 ORTHO05D000319 1.5e-07 60.1 42 54.8
CSS0010413 Camellia sinensis var. sinensis HOM05D015037 ORTHO05D111939 1.5e-07 60.1 64 56.2
Eucgr.C02162 Eucalyptus grandis HOM05D000287 ORTHO05D000319 1.5e-07 60.1 41 61.0
FAN22G2079 Fragaria x ananassa HOM05D000287 ORTHO05D000319 1.5e-07 60.1 41 58.5
Hma1.2p1_0263F.1_g105550 Hydrangea macrophylla HOM05D000287 ORTHO05D000319 1.5e-07 60.1 41 56.1
Nitab4.5_0003139g0010 Nicotiana tabacum HOM05D000287 ORTHO05D000319 1.5e-07 60.1 41 63.4
Oeu036953.1 Olea europaea HOM05D000287 ORTHO05D000319 1.5e-07 60.1 41 53.7
Rhsim01G0107200 Rhododendron simsii HOM05D000287 ORTHO05D000319 1.5e-07 60.1 41 63.4
RcHm_v2.0_Chr4g0384991 Rosa chinensis HOM05D000287 ORTHO05D000319 1.5e-07 60.1 41 58.5
vmacro20624 Vaccinium macrocarpon HOM05D000287 ORTHO05D000319 1.5e-07 60.1 41 61.0
Atru.chr3.4113 Acer truncatum HOM05D000287 ORTHO05D000319 2.0e-07 59.7 41 61.0
Aa31LG3G940 Aethionema arabicum HOM05D000287 ORTHO05D000319 2.0e-07 59.7 66 43.9
Ah.08g217920 Amaranthus hybridus HOM05D000287 ORTHO05D000319 2.0e-07 59.7 41 63.4
Gohir.A05G115800 Gossypium hirsutum HOM05D000287 ORTHO05D000319 2.0e-07 59.7 41 56.1
Sc03g0010890 Simmondsia chinensis HOM05D000287 ORTHO05D000319 2.0e-07 59.7 41 53.7
CSS0011744 Camellia sinensis var. sinensis HOM05D000287 ORTHO05D000319 2.6e-07 59.3 42 54.8
AUR62001317 Chenopodium quinoa HOM05D000287 ORTHO05D000319 2.6e-07 59.3 41 61.0
AUR62025699 Chenopodium quinoa HOM05D000287 ORTHO05D000319 2.6e-07 59.3 41 61.0
Migut.L01924 Erythranthe guttata HOM05D000287 ORTHO05D000319 2.6e-07 59.3 41 56.1
FvH4_4g01400 Fragaria vesca HOM05D000287 ORTHO05D000319 2.6e-07 59.3 41 58.5
Lj5P801T14 Lonicera japonica HOM05D000287 ORTHO05D000319 2.6e-07 59.3 41 58.5
Nitab4.5_0000073g0420 Nicotiana tabacum HOM05D000287 ORTHO05D000319 2.6e-07 59.3 41 56.1
Nitab4.5_0007685g0010 Nicotiana tabacum HOM05D000287 ORTHO05D000319 2.6e-07 59.3 41 58.5
Potri.006G085500 Populus trichocarpa HOM05D000287 ORTHO05D000319 2.6e-07 59.3 41 61.0
SGA_v2.0_scaffold31G12710 Striga asiatica HOM05D000287 ORTHO05D000319 2.6e-07 59.3 41 61.0
TWI56G0369 Tripterygium wilfordii HOM05D000287 ORTHO05D000319 2.6e-07 59.3 41 56.1
CiPaw.16G105100 Carya illinoinensis HOM05D000287 ORTHO05D000319 3.3e-07 58.9 41 56.1
AUR62020733 Chenopodium quinoa HOM05D000287 ORTHO05D000319 3.3e-07 58.9 41 58.5
COL.COLO4_38461 Corchorus olitorius HOM05D000287 ORTHO05D000319 3.3e-07 58.9 41 58.5
Duzib192G0751 Durio zibethinus HOM05D000287 ORTHO05D000319 3.3e-07 58.9 41 56.1
VMungo1383G1157 Vigna mungo HOM05D000287 ORTHO05D000319 3.3e-07 58.9 41 56.1
Ah.08g217910 Amaranthus hybridus HOM05D000287 ORTHO05D000319 4.4e-07 58.5 41 61.0
CSS0001717 Camellia sinensis var. sinensis HOM05D015037 ORTHO05D112132 4.4e-07 58.5 43 72.1
Dinv26488 Davidia involucrata HOM05D000287 ORTHO05D000319 4.4e-07 58.5 41 56.1
PGR142G3539 Punica granatum HOM05D000287 ORTHO05D000319 4.4e-07 58.5 41 56.1
Duzib192G0065 Durio zibethinus HOM05D000287 ORTHO05D000319 5.7e-07 58.2 41 53.7
Lj5C809T8 Lonicera japonica HOM05D000287 ORTHO05D000319 5.7e-07 58.2 41 56.1
RcHm_v2.0_Chr5g0024791 Rosa chinensis HOM05D000287 ORTHO05D000319 5.7e-07 58.2 59 47.5
Actinidia25731 Actinidia chinensis HOM05D000287 ORTHO05D000319 7.5e-07 57.8 41 58.5
MSTRG.5967 Avicennia marina HOM05D000287 ORTHO05D000319 7.5e-07 57.8 41 58.5
TWI31G1094 Tripterygium wilfordii HOM05D000287 ORTHO05D000319 7.5e-07 57.8 41 53.7
Ah.11g043580 Amaranthus hybridus HOM05D000287 ORTHO05D000319 9.7e-07 57.4 41 48.8
Gohir.D05G116200 Gossypium hirsutum HOM05D000287 ORTHO05D000319 9.7e-07 57.4 41 53.7
Gorai.009G120200 Gossypium raimondii HOM05D000287 ORTHO05D000319 9.7e-07 57.4 41 53.7
Actinidia02467 Actinidia chinensis HOM05D000287 ORTHO05D000319 1.3e-06 57.0 41 56.1
Cc06_g23770 Coffea canephora HOM05D000287 ORTHO05D000319 1.3e-06 57.0 41 61.0
Cc06_g23800 Coffea canephora HOM05D000287 ORTHO05D000319 1.3e-06 57.0 41 61.0
Manes.08G156600 Manihot esculenta HOM05D000287 ORTHO05D000319 1.3e-06 57.0 46 58.7
Nn5g27047 Nelumbo nucifera HOM05D000287 ORTHO05D000319 1.3e-06 57.0 41 61.0
CANSAT80G0287 Cannabis sativa HOM05D000287 ORTHO05D000319 1.7e-06 56.6 41 48.8
PGR042G2819 Punica granatum HOM05D000287 ORTHO05D000319 1.7e-06 56.6 41 56.1
Dinv09715 Davidia involucrata HOM05D000287 ORTHO05D000319 2.2e-06 56.2 41 58.5
Eucgr.C00059 Eucalyptus grandis HOM05D000287 ORTHO05D000319 2.2e-06 56.2 41 51.2
Atru.chr1.2829_Atru.chr1.2830 Acer truncatum HOM05D000287 ORTHO05D000319 2.8e-06 55.8 41 51.2
COL.COLO4_38460 Corchorus olitorius HOM05D000287 ORTHO05D000319 2.8e-06 55.8 41 51.2
Potri.018G149300 Populus trichocarpa HOM05D000287 ORTHO05D000319 2.8e-06 55.8 41 58.5
Manes.03G000200 Manihot esculenta HOM05D000287 ORTHO05D000319 3.7e-06 55.5 39 61.5
Phvul.008G034400 Phaseolus vulgaris HOM05D000287 ORTHO05D000319 3.7e-06 55.5 41 53.7
Sabra18G0126100 Salix brachista HOM05D000287 ORTHO05D000319 3.7e-06 55.5 41 56.1
Sabra18G0129900 Salix brachista HOM05D000287 ORTHO05D000319 3.7e-06 55.5 41 56.1
Dinv26487 Davidia involucrata HOM05D000287 ORTHO05D000319 4.8e-06 55.1 41 58.5
Migut.J00850 Erythranthe guttata HOM05D000287 ORTHO05D000319 4.8e-06 55.1 45 55.6
Atru.chr10.455_Atru.chr10.456 Acer truncatum HOM05D000287 ORTHO05D000319 6.3e-06 54.7 39 51.3
Lalb_Chr16g0390821 Lupinus albus HOM05D000287 ORTHO05D000319 6.3e-06 54.7 41 58.5
Ca_17442_v3 Cicer arietinum L. HOM05D000287 ORTHO05D000319 8.2e-06 54.3 41 56.1
DCAR_020454 Daucus carota HOM05D000287 ORTHO05D000319 8.2e-06 54.3 41 56.1
Phvul.008G034500 Phaseolus vulgaris HOM05D000287 ORTHO05D000319 8.2e-06 54.3 41 51.2
Psat3g201400 Pisum sativum HOM05D000287 ORTHO05D000319 8.2e-06 54.3 41 51.2
Potri.018G134000 Populus trichocarpa HOM05D000287 ORTHO05D000319 8.2e-06 54.3 41 58.5
Sabra18G0126000 Salix brachista HOM05D000287 ORTHO05D000319 8.2e-06 54.3 41 56.1
Sabra18G0129800 Salix brachista HOM05D000287 ORTHO05D000319 8.2e-06 54.3 41 56.1
TPR.G25479 Trifolium pratense HOM05D000287 ORTHO05D000319 8.2e-06 54.3 41 56.1


User provided reference genes

Program Settings