Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008377 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.0e-51 204.9 104 100.0
CSS0037302 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.9e-38 161.0 120 75.8
CSS0031737 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.8e-27 125.9 70 97.1
CSS0040477 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.8e-27 125.9 70 97.1
Duzib211G0111 Durio zibethinus HOM05D000002 ORTHO05D000001 5.0e-22 107.8 80 68.8
Duzib138G1479 Durio zibethinus HOM05D000002 ORTHO05D000001 4.2e-21 104.8 70 78.6
PGSC0003DMG400016677 Solanum tuberosum HOM05D000002 ORTHO05D000001 5.5e-21 104.4 79 68.4
Duzib168G2179 Durio zibethinus HOM05D000002 ORTHO05D000001 7.9e-20 100.5 70 75.7
Lj3g0008931 Lotus japonicus HOM05D000002 ORTHO05D000001 1.3e-19 99.8 80 63.8
PGSC0003DMG400013513 Solanum tuberosum HOM05D000002 ORTHO05D000001 1.3e-19 99.8 70 68.6
CsaV3_5G024630 Cucumis sativus L. HOM05D000002 ORTHO05D000001 2.3e-19 99.0 80 62.5
Duzib106G0529 Durio zibethinus HOM05D000002 ORTHO05D000001 2.3e-19 99.0 70 74.3
Psat7g185520 Pisum sativum HOM05D000002 ORTHO05D000001 5.1e-19 97.8 80 61.2
PGR129G0010 Punica granatum HOM05D000002 ORTHO05D000001 1.9e-18 95.9 80 61.2
PGR004G1580 Punica granatum HOM05D000002 ORTHO05D000001 4.3e-18 94.7 80 61.2
PGR142G1863 Punica granatum HOM05D000002 ORTHO05D000001 4.3e-18 94.7 80 61.2
PGSC0003DMG400044287 Solanum tuberosum HOM05D000002 ORTHO05D000001 4.3e-18 94.7 70 67.1
PGR102G0886 Punica granatum HOM05D000002 ORTHO05D000001 2.2e-17 92.4 80 58.8
CAN.G286.1 Capsicum annuum HOM05D000071 ORTHO05D000029 3.7e-17 91.7 70 68.6
CSS0002307 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.8e-17 91.3 80 60.0
CAN.G694.52 Capsicum annuum HOM05D000264 ORTHO05D000152 8.2e-17 90.5 70 67.1
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 1.1e-16 90.1 55 80.0
Sopen09g027810 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-16 90.1 80 57.5
CAN.G1045.29 Capsicum annuum HOM05D000001 ORTHO05D010162 1.8e-16 89.4 80 61.2
CAN.G339.2 Capsicum annuum HOM05D000073 ORTHO05D011077 1.8e-16 89.4 70 67.1
Psat5g268360 Pisum sativum HOM05D000002 ORTHO05D000001 5.3e-16 87.8 80 60.0
TWI14G0389 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 5.3e-16 87.8 80 58.8
Eucgr.F01722 Eucalyptus grandis HOM05D000002 ORTHO05D000001 6.9e-16 87.4 82 56.1
PGR042G1475 Punica granatum HOM05D000002 ORTHO05D000001 6.9e-16 87.4 70 64.3
Hma1.2p1_0243F.1_g100950 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 9.0e-16 87.0 80 57.5
CAN.G1337.33 Capsicum annuum HOM05D001608 ORTHO05D002070 1.2e-15 86.7 80 55.0
Sopen02g010710 Solanum pennellii HOM05D000002 ORTHO05D000001 1.2e-15 86.7 80 57.5
THA.LOC104801877 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 1.2e-15 86.7 70 62.9
VMungo1127G0211 Vigna mungo HOM05D000013 ORTHO05D000011 1.2e-15 86.7 61 68.9
PGR083G2178 Punica granatum HOM05D000002 ORTHO05D000001 1.5e-15 86.3 96 49.0
PGR142G1019 Punica granatum HOM05D000002 ORTHO05D000001 2.6e-15 85.5 80 57.5
Eucgr.H05143 Eucalyptus grandis HOM05D000002 ORTHO05D000001 3.4e-15 85.1 84 54.8
THA.LOC104800423 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 3.4e-15 85.1 82 50.0
Eucgr.C02657 Eucalyptus grandis HOM05D000002 ORTHO05D000001 4.5e-15 84.7 80 55.0
Eucgr.L03606 Eucalyptus grandis HOM05D000002 ORTHO05D000001 4.5e-15 84.7 80 55.0
PGR119G1744 Punica granatum HOM05D000002 ORTHO05D000001 4.5e-15 84.7 70 60.0
GSVIVG01015124001 Vitis vinifera HOM05D000844 ORTHO05D000680 4.5e-15 84.7 80 56.2
PGR102G3201 Punica granatum HOM05D000002 ORTHO05D000001 5.9e-15 84.3 70 61.4
GSVIVG01011363001 Vitis vinifera HOM05D002216 ORTHO05D002011 5.9e-15 84.3 70 65.7
GSVIVG01037631001 Vitis vinifera HOM05D000092 ORTHO05D000042 5.9e-15 84.3 70 65.7
Eucgr.C03386 Eucalyptus grandis HOM05D000002 ORTHO05D000001 1.0e-14 83.6 91 49.5
PGR102G0819 Punica granatum HOM05D000002 ORTHO05D000001 1.0e-14 83.6 83 48.2
THA.LOC104804916 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 1.3e-14 83.2 78 53.8
THA.LOC104808467 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 1.3e-14 83.2 78 53.8
Eucgr.C03626 Eucalyptus grandis HOM05D000002 ORTHO05D000001 1.7e-14 82.8 82 52.4
PGR142G1959 Punica granatum HOM05D000002 ORTHO05D000001 1.7e-14 82.8 80 56.2
THA.LOC109116397 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 1.7e-14 82.8 80 53.8
Eucgr.C02847 Eucalyptus grandis HOM05D000002 ORTHO05D000001 2.2e-14 82.4 82 53.7
Eucgr.L01126 Eucalyptus grandis HOM05D000002 ORTHO05D000001 2.2e-14 82.4 84 53.6
CSS0000291 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.9e-14 82.0 84 51.2
Eucgr.B00919 Eucalyptus grandis HOM05D000002 ORTHO05D000001 2.9e-14 82.0 82 53.7
Eucgr.G01578 Eucalyptus grandis HOM05D000002 ORTHO05D000001 2.9e-14 82.0 70 61.4
Eucgr.D00207 Eucalyptus grandis HOM05D000002 ORTHO05D000001 3.8e-14 81.6 70 60.0
THA.LOC104825922 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 3.8e-14 81.6 78 53.8
THA.LOC109116421 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 3.8e-14 81.6 78 53.8
Eucgr.C04364 Eucalyptus grandis HOM05D000002 ORTHO05D000001 5.0e-14 81.3 82 51.2
Eucgr.F00853 Eucalyptus grandis HOM05D000002 ORTHO05D000001 5.0e-14 81.3 70 61.4
Eucgr.K03052 Eucalyptus grandis HOM05D000002 ORTHO05D000001 5.0e-14 81.3 82 53.7
VMungo1383G3675 Vigna mungo HOM05D005458 ORTHO05D000001 5.0e-14 81.3 80 50.0
Eucgr.F00519 Eucalyptus grandis HOM05D000002 ORTHO05D000001 8.5e-14 80.5 80 52.5
Eucgr.I00145 Eucalyptus grandis HOM05D000002 ORTHO05D000001 8.5e-14 80.5 82 53.7
THA.LOC104799859 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 8.5e-14 80.5 78 52.6
Eucgr.H01309 Eucalyptus grandis HOM05D000002 ORTHO05D000001 1.1e-13 80.1 70 61.4
Eucgr.K03232 Eucalyptus grandis HOM05D000002 ORTHO05D000001 1.1e-13 80.1 91 47.3
Eucgr.L01985 Eucalyptus grandis HOM05D000002 ORTHO05D000001 1.9e-13 79.3 69 60.9
PGSC0003DMG400006637 Solanum tuberosum HOM05D000002 ORTHO05D000001 2.5e-13 79.0 53 71.7
THA.LOC104806972 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 3.2e-13 78.6 78 51.3
Ciclev10017902m.g Citrus clementina HOM05D000002 ORTHO05D000001 4.2e-13 78.2 57 70.2
Eucgr.E01889 Eucalyptus grandis HOM05D000002 ORTHO05D000001 5.5e-13 77.8 91 48.4
THA.LOC104801932 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 5.5e-13 77.8 88 47.7
Eucgr.C03442 Eucalyptus grandis HOM05D000002 ORTHO05D000001 7.2e-13 77.4 70 57.1
Sopen01g011900 Solanum pennellii HOM05D000002 ORTHO05D000001 7.2e-13 77.4 80 53.8
CAN.G279.27 Capsicum annuum HOM05D000007 ORTHO05D000017 9.4e-13 77.0 65 63.1
Eucgr.H04178 Eucalyptus grandis HOM05D000002 ORTHO05D000001 9.4e-13 77.0 84 51.2
THA.LOC104798816 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 9.4e-13 77.0 88 46.6
THA.LOC104821175 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 9.4e-13 77.0 88 47.7
Eucgr.C00972 Eucalyptus grandis HOM05D000002 ORTHO05D000001 2.7e-12 75.5 82 50.0
THA.LOC104815425 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 3.6e-12 75.1 80 50.0
Eucgr.E01470 Eucalyptus grandis HOM05D000002 ORTHO05D000001 4.6e-12 74.7 70 58.6
Eucgr.G00256 Eucalyptus grandis HOM05D000002 ORTHO05D000001 1.0e-11 73.6 70 58.6
PGR042G1924 Punica granatum HOM05D000002 ORTHO05D000001 3.0e-11 72.0 79 50.6
PGR031G2479 Punica granatum HOM05D000002 ORTHO05D000001 3.9e-11 71.6 70 51.4
CAN.G1744.9 Capsicum annuum HOM05D000011 ORTHO05D001721 8.8e-11 70.5 53 58.5
Sopen01g025280 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-10 70.1 85 43.5
Sopen05g020560 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-10 70.1 85 43.5
Eucgr.H01934 Eucalyptus grandis HOM05D000002 ORTHO05D000001 1.5e-10 69.7 70 55.7
VMungo1127G0557 Vigna mungo HOM05D000684 ORTHO05D000688 1.5e-10 69.7 72 51.4
THA.LOC104804703 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 3.3e-10 68.6 80 46.2
Manes.01G123701 Manihot esculenta HOM05D000002 ORTHO05D000001 4.3e-10 68.2 69 58.0
Sopen01g009970 Solanum pennellii HOM05D000002 ORTHO05D000001 4.3e-10 68.2 85 42.4
Duzib041G0290 Durio zibethinus HOM05D000002 ORTHO05D000001 5.7e-10 67.8 81 43.2
Sopen02g005350 Solanum pennellii HOM05D000002 ORTHO05D000001 5.7e-10 67.8 85 42.4
CsaV3_4G028800 Cucumis sativus L. HOM05D000002 ORTHO05D000001 9.7e-10 67.0 86 43.0
Sopen08g020550 Solanum pennellii HOM05D000002 ORTHO05D000001 9.7e-10 67.0 85 42.4
PGR031G0477 Punica granatum HOM05D000002 ORTHO05D000001 1.7e-09 66.2 54 57.4
PGR004G1597 Punica granatum HOM05D000002 ORTHO05D000001 2.2e-09 65.9 78 43.6
Ciclev10003832m.g Citrus clementina HOM05D000002 ORTHO05D000001 2.8e-09 65.5 55 61.8
Sopen04g014610 Solanum pennellii HOM05D000002 ORTHO05D000001 2.8e-09 65.5 85 41.2
Sopen10g006280 Solanum pennellii HOM05D000002 ORTHO05D000001 4.8e-09 64.7 69 49.3
Sopen11g015510 Solanum pennellii HOM05D000002 ORTHO05D000001 4.8e-09 64.7 84 42.9
Duzib170G0368 Durio zibethinus HOM05D000002 ORTHO05D000001 8.2e-09 63.9 81 40.7
Sopen11g017730 Solanum pennellii HOM05D000006 ORTHO05D000001 8.2e-09 63.9 85 41.2
Atru.chr10.209 Acer truncatum HOM05D000002 ORTHO05D000001 1.1e-08 63.5 87 35.6
CSS0048125 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.1e-08 63.5 60 55.0
Duzib128G0886 Durio zibethinus HOM05D000002 ORTHO05D000001 1.1e-08 63.5 81 40.7
Sopen01g020410 Solanum pennellii HOM05D006383 ORTHO05D007815 2.4e-08 62.4 69 49.3
Duzib212G0395 Durio zibethinus HOM05D000002 ORTHO05D000001 4.1e-08 61.6 81 39.5
Gorai.005G117400 Gossypium raimondii HOM05D000002 ORTHO05D000001 4.1e-08 61.6 84 41.7
Sopen08g006260 Solanum pennellii HOM05D000006 ORTHO05D000001 4.1e-08 61.6 69 47.8
TPR.G29800 Trifolium pratense HOM05D000034 ORTHO05D000037 4.1e-08 61.6 60 48.3
Duzib213G0091 Durio zibethinus HOM05D000002 ORTHO05D000001 5.3e-08 61.2 81 38.3
Sopen04g014730 Solanum pennellii HOM05D000002 ORTHO05D000001 5.3e-08 61.2 64 46.9
PGR102G0612 Punica granatum HOM05D000002 ORTHO05D000001 6.9e-08 60.8 56 51.8
CAN.G1090.34 Capsicum annuum HOM05D000011 ORTHO05D016870 9.1e-08 60.5 90 41.1
CsaV3_5G015010 Cucumis sativus L. HOM05D000002 ORTHO05D000001 1.5e-07 59.7 47 61.7
CAN.G1090.20 Capsicum annuum HOM05D000002 ORTHO05D000001 2.0e-07 59.3 84 38.1
Duzib084G1319 Durio zibethinus HOM05D000002 ORTHO05D000001 2.0e-07 59.3 81 39.5
CSS0016111 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.5e-07 58.2 80 46.2
Duzib114G0941 Durio zibethinus HOM05D000002 ORTHO05D000001 4.5e-07 58.2 69 44.9
Manes.10G049666 Manihot esculenta HOM05D000002 ORTHO05D000001 4.5e-07 58.2 81 40.7
Atru.chr1.1850 Acer truncatum HOM05D000002 ORTHO05D000001 7.7e-07 57.4 70 40.0
Duzib170G0347 Durio zibethinus HOM05D000002 ORTHO05D000001 7.7e-07 57.4 81 38.3
Manes.11G110350 Manihot esculenta HOM05D000002 ORTHO05D000001 7.7e-07 57.4 82 40.2
Thecc.05G264300 Theobroma cacao HOM05D000002 ORTHO05D000001 7.7e-07 57.4 79 39.2
Sopen01g012990 Solanum pennellii HOM05D000002 ORTHO05D000001 1.7e-06 56.2 85 37.6
Sopen11g021720 Solanum pennellii HOM05D000002 ORTHO05D000001 1.7e-06 56.2 72 44.4
TWI15G1219 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 1.7e-06 56.2 85 40.0
Atru.chr4.412 Acer truncatum HOM05D000002 ORTHO05D000001 2.9e-06 55.5 84 32.1
EL10Ac4g09273 Beta vulgaris HOM05D000002 ORTHO05D000001 2.9e-06 55.5 69 43.5
TWI31G0090 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 2.9e-06 55.5 85 38.8
Gorai.011G263500 Gossypium raimondii HOM05D000092 ORTHO05D000042 5.0e-06 54.7 62 48.4
Sopen10g013730 Solanum pennellii HOM05D000006 ORTHO05D000001 5.0e-06 54.7 85 37.6
VMungo0251G3244 Vigna mungo HOM05D005644 ORTHO05D007092 5.0e-06 54.7 42 59.5
CAN.G756.46 Capsicum annuum HOM05D000002 ORTHO05D000001 6.5e-06 54.3 69 42.0
Duzib235G0076 Durio zibethinus HOM05D000002 ORTHO05D000001 6.5e-06 54.3 42 71.4
Ciclev10027035m.g Citrus clementina HOM05D000002 ORTHO05D000001 8.5e-06 53.9 69 42.0


User provided reference genes

Program Settings