Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008363 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 9.3e-136 486.9 246 100.0
CSS0037093 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 2.3e-49 199.9 131 78.6
Actinidia24000 Actinidia chinensis HOM05D002925 ORTHO05D003247 4.4e-37 159.1 128 64.8
Dinv24181 Davidia involucrata HOM05D002925 ORTHO05D003247 1.1e-32 144.4 132 59.1
vmacro01830 Vaccinium macrocarpon HOM05D002925 ORTHO05D003247 1.2e-31 141.0 139 54.0
Actinidia00275 Actinidia chinensis HOM05D002925 ORTHO05D003247 6.2e-31 138.7 123 60.2
Rhsim11G0137200 Rhododendron simsii HOM05D002925 ORTHO05D003247 6.9e-30 135.2 122 56.6
Atru.chr6.1160 Acer truncatum HOM05D002925 ORTHO05D003247 4.2e-27 125.9 128 53.1
Cfa005642 Carpinus fangiana HOM05D002925 ORTHO05D003247 1.6e-26 124.0 138 50.0
TAR625G1540 Trochodendron aralioides HOM05D002925 ORTHO05D003247 1.3e-25 120.9 198 41.9
Haze_10615 Corylus avellana HOM05D002925 ORTHO05D003247 3.0e-25 119.8 138 49.3
Nn1g05384 Nelumbo nucifera HOM05D002925 ORTHO05D003247 6.6e-25 118.6 131 47.3
Hma1.2p1_0522F.1_g171730 Hydrangea macrophylla HOM05D002925 ORTHO05D003247 1.9e-24 117.1 186 41.4
CiPaw.06G154400 Carya illinoinensis HOM05D002925 ORTHO05D003247 7.3e-24 115.2 131 49.6
Phvul.006G205800 Phaseolus vulgaris HOM05D002925 ORTHO05D003247 2.1e-23 113.6 125 48.0
Prupe.8G062800 Prunus persica HOM05D002925 ORTHO05D003247 4.8e-23 112.5 121 51.2
VMungo0540G1175 Vigna mungo HOM05D002925 ORTHO05D003247 4.8e-23 112.5 114 49.1
MD05G1043400 Malus domestica HOM05D002925 ORTHO05D003247 8.1e-23 111.7 124 50.0
TAR076G0002 Trochodendron aralioides HOM05D002925 ORTHO05D003247 1.1e-22 111.3 124 46.8
Cpa.g.sc42.38 Carica papaya HOM05D002925 ORTHO05D003247 1.4e-22 110.9 115 51.3
MSTRG.20293 Avicennia marina HOM05D002925 ORTHO05D003247 1.8e-22 110.5 118 47.5
TWI59G1115 Tripterygium wilfordii HOM05D002925 ORTHO05D003247 3.1e-22 109.8 126 46.0
QL11p021491 Quercus lobata HOM05D002925 ORTHO05D003247 4.0e-22 109.4 113 53.1
Lalb_Chr15g0090391 Lupinus albus HOM05D002925 ORTHO05D003247 1.5e-21 107.5 126 49.2
Oeu036916.1 Olea europaea HOM05D002925 ORTHO05D003247 1.5e-21 107.5 128 43.8
Thecc.02G136300 Theobroma cacao HOM05D002925 ORTHO05D003247 2.0e-21 107.1 118 47.5
MBI02_g35745_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 4.5e-21 105.9 125 46.4
SalBow5G0297 Salvia bowleyana HOM05D002925 ORTHO05D003247 4.5e-21 105.9 121 45.5
SalBow5G2582 Salvia bowleyana HOM05D002925 ORTHO05D003247 4.5e-21 105.9 121 45.5
Manes.07G032600 Manihot esculenta HOM05D002925 ORTHO05D003247 7.6e-21 105.1 134 41.8
Potri.001G312900 Populus trichocarpa HOM05D002925 ORTHO05D003247 9.9e-21 104.8 123 47.2
Aqoxy6G00762 Aquilegia oxysepala HOM05D002925 ORTHO05D003247 3.8e-20 102.8 181 37.6
Ciclev10027826m.g Citrus clementina HOM05D002925 ORTHO05D003247 3.8e-20 102.8 184 37.0
SGA_v2.0_scaffold14G07129 Striga asiatica HOM05D002925 ORTHO05D003247 6.4e-20 102.1 115 43.5
Cc02_g21380 Coffea canephora HOM05D002925 ORTHO05D003247 2.4e-19 100.1 122 44.3
Lalb_Chr18g0060531 Lupinus albus HOM05D002925 ORTHO05D003247 3.2e-19 99.8 125 46.4
Nitab4.5_0000863g0180 Nicotiana tabacum HOM05D002925 ORTHO05D003247 9.3e-19 98.2 128 45.3
SGA_v2.0_scaffold83G26306 Striga asiatica HOM05D002925 ORTHO05D003247 1.2e-18 97.8 116 44.8
COL.COLO4_29615 Corchorus olitorius HOM05D002925 ORTHO05D003247 6.0e-18 95.5 152 39.5
Glyma.08G178400 Glycine max HOM05D002925 ORTHO05D003247 6.0e-18 95.5 124 44.4
unitig_22.g6065 Utricularia gibba HOM05D002925 ORTHO05D003247 7.9e-18 95.1 115 47.0
Gohir.A03G174900 Gossypium hirsutum HOM05D002925 ORTHO05D003247 1.3e-17 94.4 129 41.1
Nitab4.5_0001619g0030 Nicotiana tabacum HOM05D002925 ORTHO05D003247 3.0e-17 93.2 128 44.5
PGSC0003DMG400012552 Solanum tuberosum HOM05D002925 ORTHO05D003247 3.0e-17 93.2 128 42.2
Migut.B00599 Erythranthe guttata HOM05D002925 ORTHO05D003247 5.1e-17 92.4 113 44.2
Eucgr.I02657 Eucalyptus grandis HOM05D002925 ORTHO05D003247 8.7e-17 91.7 133 39.1
Solyc01g105330.3 Solanum lycopersicum HOM05D002925 ORTHO05D003247 8.7e-17 91.7 128 41.4
Sopen01g047830 Solanum pennellii HOM05D002925 ORTHO05D003247 8.7e-17 91.7 128 41.4
MBI02_g36599_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 1.1e-16 91.3 130 42.3
Peaxi162Scf00001g00002 Petunia axillaris HOM05D002925 ORTHO05D003247 1.9e-16 90.5 184 37.5
MBI02_g05741_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 2.5e-16 90.1 130 42.3
Gohir.D02G198200 Gossypium hirsutum HOM05D002925 ORTHO05D003247 4.3e-16 89.4 119 43.7
Gorai.005G221500 Gossypium raimondii HOM05D002925 ORTHO05D003247 4.3e-16 89.4 119 42.9
arahy.Tifrunner.gnm1.ann1.M5A3LZ Arachis hypogaea HOM05D002925 ORTHO05D003247 1.6e-15 87.4 113 45.1
arahy.Tifrunner.gnm1.ann1.VGLF4N Arachis hypogaea HOM05D002925 ORTHO05D003247 1.6e-15 87.4 113 45.1
Ah.01g022240 Amaranthus hybridus HOM05D002925 ORTHO05D003247 5.3e-14 82.4 131 36.6
CDE10G0684 Ceratophyllum demersum HOM05D002925 ORTHO05D003247 4.5e-13 79.3 123 32.5
Medtr2g009040 Medicago truncatula HOM05D002925 ORTHO05D003247 9.9e-13 78.2 129 39.5
CDE10G0644 Ceratophyllum demersum HOM05D002925 ORTHO05D003247 1.3e-12 77.8 123 32.5
AUR62010148 Chenopodium quinoa HOM05D002925 ORTHO05D003247 1.3e-12 77.8 123 36.6
FAN20G1033 Fragaria x ananassa HOM05D002925 ORTHO05D003247 1.3e-12 77.8 117 42.7
AUR62013144 Chenopodium quinoa HOM05D002925 ORTHO05D003247 1.7e-12 77.4 125 36.8
TPR.G25224 Trifolium pratense HOM05D002925 ORTHO05D003247 2.2e-12 77.0 123 42.3
TPR.G14997 Trifolium pratense HOM05D002925 ORTHO05D003247 3.8e-12 76.3 123 41.5
RcHm_v2.0_Chr6g0271751 Rosa chinensis HOM05D002925 ORTHO05D003247 4.9e-12 75.9 120 40.0
FvH4_2g11920 Fragaria vesca HOM05D002925 ORTHO05D003247 6.4e-12 75.5 111 42.3
RcHm_v2.0_Chr6g0271621 Rosa chinensis HOM05D002925 ORTHO05D003247 1.4e-11 74.3 120 40.0
FAN15G3696 Fragaria x ananassa HOM05D002925 ORTHO05D003247 2.4e-11 73.6 111 42.3
Ca_00141_v3 Cicer arietinum L. HOM05D002925 ORTHO05D003247 3.2e-11 73.2 123 41.5
Ciclev10000205m.g Citrus clementina HOM05D002925 ORTHO05D003247 4.6e-10 69.3 115 35.7
RcHm_v2.0_Chr6g0271781 Rosa chinensis HOM05D002925 ORTHO05D003247 1.3e-09 67.8 99 43.4
Sabra16G0197500 Salix brachista HOM05D002925 ORTHO05D003247 1.8e-09 67.4 98 40.8
GSVIVG01009040001 Vitis vinifera HOM05D002925 ORTHO05D003247 1.8e-09 67.4 123 36.6
EL10Ac1g01207 Beta vulgaris HOM05D002925 ORTHO05D003247 3.9e-09 66.2 156 26.9
Prupe.1G518500 Prunus persica HOM05D002925 ORTHO05D003247 3.9e-09 66.2 132 34.1
Dinv09024 Davidia involucrata HOM05D002925 ORTHO05D003247 6.7e-09 65.5 69 55.1
QL12p036977 Quercus lobata HOM05D002925 ORTHO05D003247 6.7e-09 65.5 126 34.1
AUR62027772 Chenopodium quinoa HOM05D002925 ORTHO05D003247 3.3e-08 63.2 117 28.2
Ah.05g169890 Amaranthus hybridus HOM05D002925 ORTHO05D003247 7.4e-08 62.0 157 26.8
ATR0782G041 Amborella trichopoda HOM05D002925 ORTHO05D003247 9.6e-08 61.6 36 80.6
AUR62018927 Chenopodium quinoa HOM05D002925 ORTHO05D003247 9.6e-08 61.6 117 28.2
Sc23g0000240 Simmondsia chinensis HOM05D002925 ORTHO05D003247 1.3e-07 61.2 107 29.9
Nitab4.5_0000232g0050 Nicotiana tabacum HOM05D002925 ORTHO05D003247 6.2e-07 58.9 133 33.1
PSO829G0001 Papaver somniferum HOM05D002925 ORTHO05D003247 8.1e-07 58.5 109 33.9
Nitab4.5_0006616g0010 Nicotiana tabacum HOM05D002925 ORTHO05D003247 1.4e-06 57.8 133 32.3
PSO210G0747 Papaver somniferum HOM05D002925 ORTHO05D003247 2.4e-06 57.0 100 35.0
PSO447G0391 Papaver somniferum HOM05D002925 ORTHO05D003247 2.4e-06 57.0 109 33.0
THA.LOC104807164 Tarenaya hassleriana HOM05D002925 ORTHO05D003247 4.0e-06 56.2 123 30.9
Hund26967 Selenicereus undatus HOM05D002925 ORTHO05D003247 5.3e-06 55.8 117 29.9


User provided reference genes

Program Settings