Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008352 Camellia sinensis var. sinensis HOM05D008012 ORTHO05D010154 3.8e-174 614.8 321 100.0
Dinv44854 Davidia involucrata HOM05D008012 ORTHO05D010154 2.3e-62 243.4 320 50.9
Dinv42620 Davidia involucrata HOM05D008012 ORTHO05D010154 1.1e-59 234.6 428 40.9
TAR628G1418 Trochodendron aralioides HOM05D008012 ORTHO05D010154 1.0e-54 218.0 344 42.7
CiPaw.07G166200 Carya illinoinensis HOM05D008012 ORTHO05D010154 2.4e-43 180.3 317 39.7
Cfa013683 Carpinus fangiana HOM05D008012 ORTHO05D010154 3.5e-42 176.4 383 38.1
Rhsim06G0072100 Rhododendron simsii HOM05D008012 ORTHO05D010154 2.9e-36 156.8 100 74.0
PGR031G3518 Punica granatum HOM05D052328 ORTHO05D010154 1.3e-33 147.9 335 34.9
vmacro21334 Vaccinium macrocarpon HOM05D008012 ORTHO05D010154 1.3e-33 147.9 144 55.6
GSVIVG01009167001 Vitis vinifera HOM05D008012 ORTHO05D010154 5.1e-33 146.0 134 56.0
Hma1.2p1_0125F.1_g058940 Hydrangea macrophylla HOM05D008012 ORTHO05D010154 8.6e-33 145.2 331 35.3
Prupe.1G530900 Prunus persica HOM05D008012 ORTHO05D010154 2.4e-30 137.1 114 60.5
Gorai.009G229900 Gossypium raimondii HOM05D008012 ORTHO05D010154 3.1e-30 136.7 312 35.6
Gohir.D05G222500 Gossypium hirsutum HOM05D008012 ORTHO05D010154 4.0e-30 136.3 312 35.6
Lalb_Chr11g0065041 Lupinus albus HOM05D008012 ORTHO05D010154 4.0e-30 136.3 108 59.3
Nn5g29899 Nelumbo nucifera HOM05D008012 ORTHO05D010154 3.4e-29 133.3 312 34.9
MBI02_g32605_MAGBIO Magnolia biondii HOM05D008012 ORTHO05D010154 1.7e-28 131.0 317 34.4
Atru.chr13.1021 Acer truncatum HOM05D008012 ORTHO05D010154 2.9e-28 130.2 314 33.1
Lalb_Chr23g0270051 Lupinus albus HOM05D008012 ORTHO05D010154 2.9e-28 130.2 98 59.2
RcHm_v2.0_Chr7g0236831 Rosa chinensis HOM05D008012 ORTHO05D010154 3.8e-28 129.8 313 34.2
Potri.005G156500 Populus trichocarpa HOM05D008012 ORTHO05D010154 4.9e-28 129.4 316 34.2
Cpa.g.sc21.9 Carica papaya HOM05D008012 ORTHO05D010154 2.4e-27 127.1 104 55.8
Duzib093G0747 Durio zibethinus HOM05D008012 ORTHO05D010154 3.2e-27 126.7 335 32.8
Lj1g0025426 Lotus japonicus HOM05D008012 ORTHO05D010154 4.2e-27 126.3 119 53.8
Ciclev10002397m.g Citrus clementina HOM05D008012 ORTHO05D010154 1.6e-26 124.4 314 31.5
Hund16860 Selenicereus undatus HOM05D008012 ORTHO05D010154 3.5e-26 123.2 134 47.0
Gohir.A05G219900 Gossypium hirsutum HOM05D008012 ORTHO05D010154 4.6e-26 122.9 314 35.0
AUR62019041 Chenopodium quinoa HOM05D008012 ORTHO05D010154 1.0e-25 121.7 108 51.9
Aqoxy6G01439 Aquilegia oxysepala HOM05D008012 ORTHO05D010154 3.0e-25 120.2 140 45.0
EL10Ac1g01062 Beta vulgaris HOM05D008012 ORTHO05D010154 3.0e-25 120.2 125 44.0
COL.COLO4_35233 Corchorus olitorius HOM05D008012 ORTHO05D010154 5.1e-25 119.4 313 31.9
Aqoxy5G01307 Aquilegia oxysepala HOM05D008012 ORTHO05D010154 6.6e-25 119.0 123 48.8
Glyma.04G091500 Glycine max HOM05D008012 ORTHO05D010154 7.3e-24 115.5 133 46.6
Glyma.06G093300 Glycine max HOM05D008012 ORTHO05D010154 7.3e-24 115.5 116 51.7
Phvul.009G144400 Phaseolus vulgaris HOM05D008012 ORTHO05D010154 7.3e-24 115.5 177 40.1
arahy.Tifrunner.gnm1.ann1.S7389H Arachis hypogaea HOM05D008012 ORTHO05D010154 2.1e-23 114.0 134 46.3
Manes.18G059880 Manihot esculenta HOM05D008012 ORTHO05D010154 1.1e-22 111.7 316 32.3
VMungo1309G2208 Vigna mungo HOM05D008012 ORTHO05D010154 1.1e-22 111.7 91 57.1
HanXRQChr12g0378051 Helianthus annuus HOM05D008012 ORTHO05D010154 1.4e-22 111.3 164 40.2
ECA232G0711 Erigeron canadensis HOM05D008012 ORTHO05D010154 3.1e-22 110.2 161 42.2
QL09p017632 Quercus lobata HOM05D008012 ORTHO05D010154 4.0e-22 109.8 311 32.2
Eucgr.F02139 Eucalyptus grandis HOM05D008012 ORTHO05D010154 5.3e-22 109.4 318 29.9
FAN18G1410 Fragaria x ananassa HOM05D008012 ORTHO05D010154 5.3e-22 109.4 137 46.0
Lsat_1_v5_gn_9_75360 Lactuca sativa HOM05D008012 ORTHO05D010154 6.9e-22 109.0 107 53.3
Sabra05G0120100 Salix brachista HOM05D008012 ORTHO05D010154 9.0e-22 108.6 316 31.0
Sc23g0000670 Simmondsia chinensis HOM05D008012 ORTHO05D010154 9.0e-22 108.6 82 62.2
FvH4_5g35450 Fragaria vesca HOM05D008012 ORTHO05D010154 2.6e-21 107.1 136 44.9
FAN08G2109 Fragaria x ananassa HOM05D008012 ORTHO05D010154 2.6e-21 107.1 136 44.9
FAN04G0544 Fragaria x ananassa HOM05D008012 ORTHO05D010154 5.8e-21 105.9 136 43.4
Thecc.08G070000 Theobroma cacao HOM05D008012 ORTHO05D010154 9.9e-21 105.1 449 28.3
HanXRQChr12g0378041 Helianthus annuus HOM05D008012 ORTHO05D010154 1.1e-19 101.7 100 50.0
TPR.G26063 Trifolium pratense HOM05D008012 ORTHO05D010154 1.1e-19 101.7 100 48.0
PSO017G0519 Papaver somniferum HOM05D008012 ORTHO05D010154 2.4e-19 100.5 311 30.5
Ca_15998_v3 Cicer arietinum L. HOM05D008012 ORTHO05D010154 4.6e-18 96.3 93 49.5
TWI56G1079 Tripterygium wilfordii HOM05D008012 ORTHO05D010154 7.8e-18 95.5 439 28.0
ATR0665G245 Amborella trichopoda HOM05D008012 ORTHO05D010154 1.0e-17 95.1 103 47.6
CANSAT25G2577 Cannabis sativa HOM05D008012 ORTHO05D010154 1.0e-17 95.1 304 29.9
CSS0015058 Camellia sinensis var. sinensis HOM05D008012 ORTHO05D010154 5.1e-17 92.8 51 84.3
CDE04G1170 Ceratophyllum demersum HOM05D008012 ORTHO05D010154 6.6e-17 92.4 309 27.8
CAN.G1215.11 Capsicum annuum HOM05D008012 ORTHO05D010154 8.7e-17 92.0 106 46.2
Medtr3g100460 Medicago truncatula HOM05D008012 ORTHO05D010154 2.5e-16 90.5 96 46.9
Psat5g046360 Pisum sativum HOM05D008012 ORTHO05D010154 7.3e-16 89.0 126 41.3
Actinidia10381 Actinidia chinensis HOM05D000160 ORTHO05D001344 1.3e-15 88.2 57 68.4
Zm00001eb038310 Zea mays HOM05D008012 ORTHO05D010154 4.0e-14 83.2 98 43.9
SEGI_09514 Sequoiadendron giganteum HOM05D008012 ORTHO05D010154 1.3e-09 68.2 86 39.5
arahy.Tifrunner.gnm1.ann1.XWH5X4 Arachis hypogaea HOM05D008012 ORTHO05D010154 5.1e-09 66.2 105 40.0
Glyma.03G186700 Glycine max HOM05D008196 ORTHO05D010261 1.9e-08 64.3 88 35.2
HPP92_005977 Vanilla planifolia HOM05D061362 ORTHO05D010154 1.9e-08 64.3 201 26.4
CSS0023045 Camellia sinensis var. sinensis HOM05D008012 ORTHO05D010154 3.3e-08 63.5 59 55.9
Glyma.19G186800 Glycine max HOM05D008196 ORTHO05D010261 4.3e-08 63.2 85 34.1
Os08g0477800 Oryza sativa ssp. japonica HOM05D008012 ORTHO05D010154 7.4e-08 62.4 189 29.6
Pp3c2_36970 Physcomitrium patens HOM05D008196 ORTHO05D010261 1.3e-07 61.6 95 35.8
Pp3c2_36980 Physcomitrium patens HOM05D008196 ORTHO05D010261 1.3e-07 61.6 95 35.8
Phvul.001G181700 Phaseolus vulgaris HOM05D008196 ORTHO05D010261 2.1e-07 60.8 91 34.1
Mapoly0028s0074 Marchantia polymorpha HOM05D008196 ORTHO05D010261 2.8e-07 60.5 126 28.6
arahy.Tifrunner.gnm1.ann1.A0NJYH Arachis hypogaea HOM05D008196 ORTHO05D010261 3.7e-07 60.1 85 34.1
SMO367G1035 Selaginella moellendorffii HOM05D008196 ORTHO05D010261 4.8e-07 59.7 61 42.6
Pp3c1_4500 Physcomitrium patens HOM05D008196 ORTHO05D010261 1.4e-06 58.2 90 30.0
Lj1g0021041 Lotus japonicus HOM05D008196 ORTHO05D010261 1.8e-06 57.8 88 35.2
Sopen07g015000 Solanum pennellii HOM05D000002 ORTHO05D000001 5.3e-06 56.2 50 50.0


User provided reference genes

Program Settings