Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008335 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 5.3e-266 920.6 522 100.0
RhsimUnG0118100 Rhododendron simsii HOM05D003265 ORTHO05D003819 2.8e-113 413.3 495 54.3
Actinidia05271 Actinidia chinensis HOM05D003265 ORTHO05D003819 6.0e-108 395.6 535 56.6
Rhsim04G0151400 Rhododendron simsii HOM05D003265 ORTHO05D003819 7.3e-90 335.5 505 49.7
Actinidia13105 Actinidia chinensis HOM05D003265 ORTHO05D003819 7.9e-76 288.9 386 52.6
CSS0020316 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 1.2e-71 275.0 351 54.4
Haze_20650 Corylus avellana HOM05D003265 ORTHO05D003819 1.2e-63 248.4 522 39.8
Cfa017508 Carpinus fangiana HOM05D003265 ORTHO05D003819 1.5e-63 248.1 566 39.0
vmacro20060 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 2.8e-57 227.3 288 48.6
TAR633G0548 Trochodendron aralioides HOM05D003265 ORTHO05D003819 1.2e-55 221.9 520 35.6
Dinv35709 Davidia involucrata HOM05D003265 ORTHO05D003819 4.3e-50 203.4 413 39.0
QL07p045275 Quercus lobata HOM05D003265 ORTHO05D003819 1.1e-48 198.7 533 37.9
CiPaw.10G137500 Carya illinoinensis HOM05D003265 ORTHO05D003819 5.3e-40 169.9 455 35.6
Dinv37252 Davidia involucrata HOM05D003265 ORTHO05D003819 3.8e-38 163.7 207 54.6
GSVIVG01025625001 Vitis vinifera HOM05D003265 ORTHO05D003819 3.8e-38 163.7 289 42.6
Oeu035141.2 Olea europaea HOM05D003265 ORTHO05D003819 1.4e-35 155.2 532 35.9
TAR623G0684 Trochodendron aralioides HOM05D003265 ORTHO05D003819 2.3e-35 154.5 367 38.4
Prupe.6G241300 Prunus persica HOM05D003265 ORTHO05D003819 7.4e-34 149.4 415 35.7
Cc06_g03550 Coffea canephora HOM05D003265 ORTHO05D003819 9.7e-34 149.1 391 38.6
Migut.L01659 Erythranthe guttata HOM05D003265 ORTHO05D003819 8.2e-33 146.0 360 36.9
Manes.08G003400 Manihot esculenta HOM05D003265 ORTHO05D003819 2.6e-31 141.0 460 34.1
Oeu026844.1 Olea europaea HOM05D003265 ORTHO05D003819 2.6e-31 141.0 502 32.9
RcHm_v2.0_Chr3g0468801 Rosa chinensis HOM05D003265 ORTHO05D003819 5.5e-29 133.3 435 32.6
Atru.chr8.2556 Acer truncatum HOM05D003265 ORTHO05D003819 7.2e-29 132.9 407 35.4
FAN05G5023 Fragaria x ananassa HOM05D003265 ORTHO05D003819 1.2e-28 132.1 438 33.1
FAN05G5644 Fragaria x ananassa HOM05D003265 ORTHO05D003819 1.2e-28 132.1 438 33.1
TWI74G1096 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 1.2e-28 132.1 438 32.0
Duzib128G1251 Durio zibethinus HOM05D003265 ORTHO05D003819 2.1e-28 131.3 383 35.5
Potri.016G085600 Populus trichocarpa HOM05D003265 ORTHO05D003819 2.7e-28 131.0 462 34.8
MD12G1124300 Malus domestica HOM05D003265 ORTHO05D003819 1.8e-27 128.3 373 35.1
Sabra16G0092200 Salix brachista HOM05D003265 ORTHO05D003819 4.0e-27 127.1 445 34.6
Thecc.05G053900 Theobroma cacao HOM05D003265 ORTHO05D003819 5.2e-27 126.7 549 31.9
MSTRG.26726 Avicennia marina HOM05D003265 ORTHO05D003819 8.8e-27 125.9 516 32.4
Nitab4.5_0001142g0090 Nicotiana tabacum HOM05D000855 ORTHO05D002321 1.2e-26 125.6 363 35.5
COL.COLO4_27082 Corchorus olitorius HOM05D003265 ORTHO05D003819 2.0e-26 124.8 465 31.8
FvH4_6g15330 Fragaria vesca HOM05D003265 ORTHO05D003819 3.4e-26 124.0 464 31.5
Nitab4.5_0003895g0030 Nicotiana tabacum HOM05D000855 ORTHO05D002321 7.5e-26 122.9 302 42.1
PGSC0003DMG400001737 Solanum tuberosum HOM05D003265 ORTHO05D003819 1.3e-25 122.1 307 43.0
Solyc09g007340.4 Solanum lycopersicum HOM05D000855 ORTHO05D002321 6.3e-25 119.8 301 43.9
Sopen09g002240 Solanum pennellii HOM05D003265 ORTHO05D003819 1.8e-24 118.2 301 43.5
Dinv04678 Davidia involucrata HOM05D003265 ORTHO05D003819 4.1e-24 117.1 496 29.6
CAN.G608.11 Capsicum annuum HOM05D003265 ORTHO05D003819 4.5e-23 113.6 302 37.4
MD04G1104400 Malus domestica HOM05D003265 ORTHO05D003819 5.9e-23 113.2 372 34.4
Ca_08825_v3 Cicer arietinum L. HOM05D003265 ORTHO05D003819 1.7e-22 111.7 259 38.2
Gohir.D01G205900 Gossypium hirsutum HOM05D003265 ORTHO05D003819 1.7e-22 111.7 543 30.4
Gorai.002G250300 Gossypium raimondii HOM05D003265 ORTHO05D003819 2.2e-22 111.3 543 30.8
FAN14G0893 Fragaria x ananassa HOM05D000009 ORTHO05D003819 3.8e-22 110.5 358 33.8
Sabra06G0103300 Salix brachista HOM05D003265 ORTHO05D003819 3.8e-22 110.5 355 34.4
Manes.09G080700 Manihot esculenta HOM05D003265 ORTHO05D003819 6.5e-22 109.8 269 34.9
Glyma.03G177900 Glycine max HOM05D003265 ORTHO05D003819 8.5e-22 109.4 524 28.8
Duzib106G1383 Durio zibethinus HOM05D003265 ORTHO05D003819 7.2e-21 106.3 511 29.4
GSVIVG01016342001 Vitis vinifera HOM05D003265 ORTHO05D003819 7.2e-21 106.3 430 32.1
FAN09G0144 Fragaria x ananassa HOM05D003265 ORTHO05D003819 9.4e-21 105.9 444 30.6
Gohir.A01G217200 Gossypium hirsutum HOM05D003265 ORTHO05D003819 9.4e-21 105.9 536 29.5
SalBow4G0859 Salvia bowleyana HOM05D003265 ORTHO05D003819 1.6e-20 105.1 312 36.5
Ciclev10011133m.g Citrus clementina HOM05D003265 ORTHO05D003819 2.1e-20 104.8 318 31.4
Potri.006G131650 Populus trichocarpa HOM05D003265 ORTHO05D003819 6.1e-20 103.2 437 33.9
Eucgr.A01175 Eucalyptus grandis HOM05D003265 ORTHO05D003819 1.0e-19 102.4 512 31.1
PGR004G1993 Punica granatum HOM05D000855 ORTHO05D002321 1.4e-19 102.1 499 31.5
Psat3g044800 Pisum sativum HOM05D003265 ORTHO05D003819 1.5e-18 98.6 262 34.4
Phvul.001G174800 Phaseolus vulgaris HOM05D003265 ORTHO05D003819 4.4e-18 97.1 542 26.0
Sc20g0004060 Simmondsia chinensis HOM05D003265 ORTHO05D003819 9.8e-18 95.9 223 40.8
Lalb_Chr20g0112961 Lupinus albus HOM05D003265 ORTHO05D003819 2.2e-17 94.7 304 32.2
Cpa.g.sc114.39 Carica papaya HOM05D000666 ORTHO05D001431 1.1e-16 92.4 475 30.3
TWI77G0315 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 3.1e-16 90.9 205 39.0
MSTRG.10296 Avicennia marina HOM05D003265 ORTHO05D003819 4.1e-16 90.5 301 38.9
Hund20166 Selenicereus undatus HOM05D003265 ORTHO05D003819 5.4e-16 90.1 544 28.1
Actinidia38248 Actinidia chinensis HOM05D003265 ORTHO05D003819 7.0e-16 89.7 478 28.5
Medtr7g100700 Medicago truncatula HOM05D003265 ORTHO05D003819 1.2e-15 89.0 514 26.5
SGA_v2.0_scaffold35G14161 Striga asiatica HOM05D003265 ORTHO05D003819 2.0e-15 88.2 316 34.5
Aqoxy3G02606 Aquilegia oxysepala HOM05D003265 ORTHO05D003819 7.7e-15 86.3 299 33.4
Glyma.19G178700 Glycine max HOM05D003265 ORTHO05D003819 1.0e-14 85.9 396 28.3
Sed0003387 Sechium edule HOM05D003265 ORTHO05D003819 2.9e-14 84.3 304 32.6
DCAR_014962 Daucus carota HOM05D003265 ORTHO05D003819 2.5e-13 81.3 308 31.8
Nn2g10657 Nelumbo nucifera HOM05D003265 ORTHO05D003819 2.5e-13 81.3 322 35.4
Gorai.006G168800 Gossypium raimondii HOM05D003265 ORTHO05D003819 5.5e-13 80.1 362 31.2
Rhsim03G0122700 Rhododendron simsii HOM05D003265 ORTHO05D003819 5.5e-13 80.1 477 24.9
Ca_11451_v3 Cicer arietinum L. HOM05D003265 ORTHO05D003819 2.1e-12 78.2 282 35.1
Nn2g12994 Nelumbo nucifera HOM05D003265 ORTHO05D003819 8.0e-12 76.3 205 35.1
Peaxi162Scf00005g04612 Petunia axillaris HOM05D003265 ORTHO05D003819 8.0e-12 76.3 191 35.6
MELO3C009314.2 Cucumis melo HOM05D003265 ORTHO05D003819 4.0e-11 73.9 329 32.2
DCAR_017729 Daucus carota HOM05D003265 ORTHO05D003819 1.2e-10 72.4 360 31.1
Oeu026065.2 Olea europaea HOM05D003265 ORTHO05D003819 2.0e-10 71.6 500 29.8
arahy.Tifrunner.gnm1.ann1.1ZS95I Arachis hypogaea HOM05D003265 ORTHO05D003819 5.7e-10 70.1 120 40.0
VMungo1383G3553 Vigna mungo HOM05D003265 ORTHO05D003819 1.7e-09 68.6 491 25.9
Lj1g0023124 Lotus japonicus HOM05D003265 ORTHO05D003819 3.7e-09 67.4 425 25.4
Medtr1g066870 Medicago truncatula HOM05D003265 ORTHO05D003819 8.3e-09 66.2 259 33.6
TPR.G36939 Trifolium pratense HOM05D003265 ORTHO05D003819 8.3e-09 66.2 492 26.2
arahy.Tifrunner.gnm1.ann1.H355B7 Arachis hypogaea HOM05D003265 ORTHO05D003819 1.1e-08 65.9 118 39.0
PSO339G3745 Papaver somniferum HOM05D003265 ORTHO05D003819 1.1e-08 65.9 368 25.3
unitig_746.g26761 Utricularia gibba HOM05D003265 ORTHO05D003819 1.8e-08 65.1 377 28.4
CsaV3_3G035550 Cucumis sativus L. HOM05D003265 ORTHO05D003819 2.4e-08 64.7 319 32.6
Psat6g070560 Pisum sativum HOM05D003265 ORTHO05D003819 3.2e-08 64.3 219 32.9
TPR.G30247 Trifolium pratense HOM05D003265 ORTHO05D003819 3.2e-08 64.3 241 30.3
COL.COLO4_23753 Corchorus olitorius HOM05D003265 ORTHO05D003819 9.2e-08 62.8 159 35.8
HanXRQChr11g0350071 Helianthus annuus HOM05D003265 ORTHO05D003819 1.2e-07 62.4 279 29.0
PSO384G1633 Papaver somniferum HOM05D003265 ORTHO05D003819 1.2e-07 62.4 572 26.6
Ah.15g092100 Amaranthus hybridus HOM05D003265 ORTHO05D003819 1.6e-07 62.0 479 26.3
Lj1A924T53 Lonicera japonica HOM05D003265 ORTHO05D003819 1.6e-07 62.0 480 27.7
Lalb_Chr01g0019031 Lupinus albus HOM05D003265 ORTHO05D003819 2.0e-07 61.6 283 29.0
SGA_v2.0_scaffold94G28667 Striga asiatica HOM05D003265 ORTHO05D003819 2.7e-07 61.2 308 32.8
AUR62040021 Chenopodium quinoa HOM05D003265 ORTHO05D003819 3.5e-07 60.8 257 30.4
THA.LOC104806495 Tarenaya hassleriana HOM05D003265 ORTHO05D003819 3.5e-07 60.8 185 32.4
Lj3P979T38 Lonicera japonica HOM05D003265 ORTHO05D003819 5.9e-07 60.1 127 42.5
ClCG10G020560 Citrullus lanatus HOM05D003265 ORTHO05D003819 7.8e-07 59.7 356 29.2
CSS0006813 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 1.3e-06 58.9 465 27.3
Lj5g0012648 Lotus japonicus HOM05D003265 ORTHO05D003819 1.3e-06 58.9 287 31.7
Prupe.2G219100 Prunus persica HOM05D003265 ORTHO05D003819 2.3e-06 58.2 300 28.7
Thecc.10G067600 Theobroma cacao HOM05D003265 ORTHO05D003819 2.3e-06 58.2 231 32.9
EL10Ac7g17351 Beta vulgaris HOM05D003265 ORTHO05D003819 2.9e-06 57.8 333 28.5
CSS0002755 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 3.9e-06 57.4 481 26.8
QL08p056892 Quercus lobata HOM05D003265 ORTHO05D003819 3.9e-06 57.4 351 25.9
CSS0013290 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 5.0e-06 57.0 463 26.1
HanXRQChr01g0027471 Helianthus annuus HOM05D003265 ORTHO05D003819 5.0e-06 57.0 256 30.9


User provided reference genes

Program Settings