Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008321 Camellia sinensis var. sinensis HOM05D006126 ORTHO05D007792 2.2e-48 195.3 96 100.0
CSS0009647 Camellia sinensis var. sinensis HOM05D006126 ORTHO05D007792 3.9e-37 157.9 96 85.4
CSS0003927 Camellia sinensis var. sinensis HOM05D006126 ORTHO05D007792 7.1e-15 84.0 37 97.3
CSS0033902 Camellia sinensis var. sinensis HOM05D006126 ORTHO05D007792 7.1e-15 84.0 37 97.3
Actinidia37776 Actinidia chinensis HOM05D006126 ORTHO05D007792 2.1e-14 82.4 37 94.6
CANSAT64G0080 Cannabis sativa HOM05D006126 ORTHO05D007792 1.0e-13 80.1 37 94.6
Sed0001019 Sechium edule HOM05D006126 ORTHO05D007792 1.0e-13 80.1 38 92.1
Dinv11896 Davidia involucrata HOM05D006126 ORTHO05D007792 1.7e-13 79.3 37 91.9
ClCG10G017990 Citrullus lanatus HOM05D006126 ORTHO05D007792 3.0e-13 78.6 37 91.9
arahy.Tifrunner.gnm1.ann1.1KUK4G Arachis hypogaea HOM05D006126 ORTHO05D007792 3.9e-13 78.2 40 85.0
arahy.Tifrunner.gnm1.ann1.Y9G5AQ Arachis hypogaea HOM05D006126 ORTHO05D007792 3.9e-13 78.2 40 85.0
CAN.G674.36 Capsicum annuum HOM05D006126 ORTHO05D007792 3.9e-13 78.2 37 91.9
DCAR_013459 Daucus carota HOM05D006126 ORTHO05D007792 3.9e-13 78.2 91 50.5
Nitab4.5_0000721g0080 Nicotiana tabacum HOM05D006126 ORTHO05D007792 3.9e-13 78.2 37 91.9
Nitab4.5_0004995g0010 Nicotiana tabacum HOM05D006126 ORTHO05D007792 3.9e-13 78.2 37 91.9
Peaxi162Scf00203g00033 Petunia axillaris HOM05D006126 ORTHO05D007792 3.9e-13 78.2 37 91.9
Solyc10g081650.2 Solanum lycopersicum HOM05D006126 ORTHO05D007792 3.9e-13 78.2 37 91.9
Sopen10g032160 Solanum pennellii HOM05D006126 ORTHO05D007792 3.9e-13 78.2 37 91.9
PGSC0003DMG400028224 Solanum tuberosum HOM05D006126 ORTHO05D007792 3.9e-13 78.2 37 91.9
Phvul.007G265400 Phaseolus vulgaris HOM05D006126 ORTHO05D007792 5.1e-13 77.8 37 91.9
VMungo0720G2782 Vigna mungo HOM05D006126 ORTHO05D007792 5.1e-13 77.8 37 91.9
CDE06G1404 Ceratophyllum demersum HOM05D006126 ORTHO05D007792 6.6e-13 77.4 38 86.8
CsaV3_3G038300 Cucumis sativus L. HOM05D006126 ORTHO05D007792 6.6e-13 77.4 37 89.2
GSVIVG01022527001 Vitis vinifera HOM05D006126 ORTHO05D007792 8.6e-13 77.0 37 91.9
BcaC07g42047 Brassica carinata HOM05D006126 ORTHO05D007792 1.1e-12 76.6 37 89.2
A09p66770 Brassica napus HOM05D006126 ORTHO05D007792 1.1e-12 76.6 37 89.2
C08p50990 Brassica napus HOM05D006126 ORTHO05D007792 1.1e-12 76.6 37 89.2
BolC8t52627H Brassica oleracea HOM05D006126 ORTHO05D007792 1.1e-12 76.6 37 89.2
BraA09t42015Z Brassica rapa HOM05D006126 ORTHO05D007792 1.1e-12 76.6 37 89.2
Ciclev10011230m.g Citrus clementina HOM05D006126 ORTHO05D007792 1.1e-12 76.6 40 82.5
MELO3C009571.2 Cucumis melo HOM05D006126 ORTHO05D007792 1.1e-12 76.6 37 89.2
Sp1g05550 Schrenkiella parvula HOM05D006126 ORTHO05D007792 1.1e-12 76.6 37 89.2
arahy.Tifrunner.gnm1.ann1.DC9D8R Arachis hypogaea HOM05D006126 ORTHO05D000008 1.5e-12 76.3 42 81.0
CiPaw.09G023900 Carya illinoinensis HOM05D006126 ORTHO05D007792 1.5e-12 76.3 91 49.5
Lsat_1_v5_gn_9_13960 Lactuca sativa HOM05D006126 ORTHO05D007792 1.5e-12 76.3 40 85.0
MBI05_g40561_MAGBIO Magnolia biondii HOM05D006126 ORTHO05D007792 1.5e-12 76.3 37 89.2
Manes.08G037100 Manihot esculenta HOM05D006126 ORTHO05D007792 1.5e-12 76.3 37 89.2
QL07p026395 Quercus lobata HOM05D006126 ORTHO05D007792 1.5e-12 76.3 37 89.2
Cc06_g06950 Coffea canephora HOM05D006126 ORTHO05D007792 1.9e-12 75.9 37 89.2
Lj1A1059G39 Lonicera japonica HOM05D006126 ORTHO05D007792 1.9e-12 75.9 37 89.2
TWI53G0494 Tripterygium wilfordii HOM05D006126 ORTHO05D007792 1.9e-12 75.9 40 85.0
Atru.chr8.1287 Acer truncatum HOM05D006126 ORTHO05D007792 3.3e-12 75.1 37 86.5
Aa31LG1G7850 Aethionema arabicum HOM05D006126 ORTHO05D007792 3.3e-12 75.1 37 86.5
AL1G16820 Arabidopsis lyrata HOM05D006126 ORTHO05D007792 3.3e-12 75.1 37 86.5
AT1G06820 Arabidopsis thaliana HOM05D006126 ORTHO05D007792 3.3e-12 75.1 37 86.5
Carub.0001s0613 Capsella rubella HOM05D006126 ORTHO05D007792 3.3e-12 75.1 37 86.5
CARHR006510 Cardamine hirsuta HOM05D006126 ORTHO05D007792 3.3e-12 75.1 37 86.5
Thhalv10007141m.g Eutrema salsugineum HOM05D006126 ORTHO05D007792 3.3e-12 75.1 37 86.5
Ah.12g059600 Amaranthus hybridus HOM05D006126 ORTHO05D007792 5.6e-12 74.3 37 86.5
Cpa.g.sc222.16 Carica papaya HOM05D006126 ORTHO05D007792 5.6e-12 74.3 38 84.2
Rhsim03G0058700 Rhododendron simsii HOM05D006126 ORTHO05D007792 5.6e-12 74.3 39 84.6
Cfa020070 Carpinus fangiana HOM05D006126 ORTHO05D007792 7.3e-12 73.9 37 86.5
Ca_11655_v3 Cicer arietinum L. HOM05D006126 ORTHO05D007792 7.3e-12 73.9 37 86.5
Haze_20125 Corylus avellana HOM05D006126 ORTHO05D007792 7.3e-12 73.9 37 86.5
ECA247G0804 Erigeron canadensis HOM05D006126 ORTHO05D007792 7.3e-12 73.9 37 86.5
HanXRQChr08g0230681 Helianthus annuus HOM05D006126 ORTHO05D007792 7.3e-12 73.9 37 86.5
MD14G1044400 Malus domestica HOM05D006126 ORTHO05D007792 7.3e-12 73.9 37 86.5
Potri.006G199600 Populus trichocarpa HOM05D006126 ORTHO05D007792 7.3e-12 73.9 37 86.5
Migut.L01843 Erythranthe guttata HOM05D006126 ORTHO05D007792 9.6e-12 73.6 40 82.5
Eucgr.A02546 Eucalyptus grandis HOM05D006126 ORTHO05D007792 9.6e-12 73.6 37 86.5
FvH4_6g21000 Fragaria vesca HOM05D006126 ORTHO05D007792 9.6e-12 73.6 37 86.5
FAN05G1377 Fragaria x ananassa HOM05D006126 ORTHO05D007792 9.6e-12 73.6 37 86.5
FAN05G2399 Fragaria x ananassa HOM05D006126 ORTHO05D007792 9.6e-12 73.6 37 86.5
FAN09G1524 Fragaria x ananassa HOM05D006126 ORTHO05D007792 9.6e-12 73.6 37 86.5
FAN14G0373 Fragaria x ananassa HOM05D006126 ORTHO05D007792 9.6e-12 73.6 37 86.5
Lj5g0022903 Lotus japonicus HOM05D006126 ORTHO05D007792 9.6e-12 73.6 37 83.8
Pp3c23_1220 Physcomitrium patens HOM05D006126 ORTHO05D007792 9.6e-12 73.6 37 86.5
RcHm_v2.0_Chr3g0477381 Rosa chinensis HOM05D006126 ORTHO05D007792 9.6e-12 73.6 37 86.5
Medtr1g054965 Medicago truncatula HOM05D006126 ORTHO05D007792 1.2e-11 73.2 38 84.2
Nn2g14414 Nelumbo nucifera HOM05D006126 ORTHO05D007792 1.2e-11 73.2 37 86.5
Psat6g087240 Pisum sativum HOM05D006126 ORTHO05D007792 1.2e-11 73.2 38 84.2
Potri.016G066000 Populus trichocarpa HOM05D006126 ORTHO05D007792 1.2e-11 73.2 37 86.5
Prupe.7G089400 Prunus persica HOM05D006126 ORTHO05D007792 1.2e-11 73.2 37 86.5
Sabra16G0067300 Salix brachista HOM05D006126 ORTHO05D007792 1.2e-11 73.2 37 86.5
Sc01g0005650 Simmondsia chinensis HOM05D006126 ORTHO05D007792 1.2e-11 73.2 37 86.5
TPR.G21232 Trifolium pratense HOM05D006126 ORTHO05D007792 1.2e-11 73.2 38 84.2
Glyma.02G188200 Glycine max HOM05D006126 ORTHO05D007792 2.1e-11 72.4 37 86.5
Glyma.10G086700 Glycine max HOM05D006126 ORTHO05D007792 2.1e-11 72.4 37 86.5
Lalb_Chr02g0154231 Lupinus albus HOM05D006126 ORTHO05D007792 2.1e-11 72.4 91 47.3
Hund10797 Selenicereus undatus HOM05D006126 ORTHO05D007792 2.1e-11 72.4 37 86.5
Aa31LG1G7870 Aethionema arabicum HOM05D006126 ORTHO05D007792 2.8e-11 72.0 37 83.8
THA.LOC104823508 Tarenaya hassleriana HOM05D006126 ORTHO05D007792 2.8e-11 72.0 40 80.0
TAR633G2701 Trochodendron aralioides HOM05D006126 ORTHO05D007792 2.8e-11 72.0 37 83.8
unitig_578.g16481 Utricularia gibba HOM05D006126 ORTHO05D007792 2.8e-11 72.0 40 80.0
Aqoxy2G00644 Aquilegia oxysepala HOM05D006126 ORTHO05D007792 3.6e-11 71.6 91 46.2
Gohir.A01G135800 Gossypium hirsutum HOM05D006126 ORTHO05D007792 3.6e-11 71.6 37 86.5
Gohir.D01G122900 Gossypium hirsutum HOM05D006126 ORTHO05D007792 3.6e-11 71.6 37 86.5
Gorai.002G153800 Gossypium raimondii HOM05D006126 ORTHO05D007792 3.6e-11 71.6 37 86.5
Pp3c20_12140 Physcomitrium patens HOM05D006126 ORTHO05D007792 3.6e-11 71.6 37 83.8
PSO339G3826 Papaver somniferum HOM05D006126 ORTHO05D007792 4.7e-11 71.2 37 83.8
PSO384G0472 Papaver somniferum HOM05D006126 ORTHO05D007792 4.7e-11 71.2 37 83.8
SMO141G0109 Selaginella moellendorffii HOM05D006126 ORTHO05D007792 4.7e-11 71.2 37 83.8
AUR62036324 Chenopodium quinoa HOM05D006126 ORTHO05D007792 6.2e-11 70.9 37 81.1
AUR62038430 Chenopodium quinoa HOM05D006126 ORTHO05D007792 6.2e-11 70.9 37 81.1
HPP92_002245 Vanilla planifolia HOM05D006126 ORTHO05D007792 6.2e-11 70.9 91 47.3
Os11g0572700 Oryza sativa ssp. japonica HOM05D006126 ORTHO05D007792 8.1e-11 70.5 38 78.9
RcHm_v2.0_Chr7g0212011 Rosa chinensis HOM05D006126 ORTHO05D007792 8.1e-11 70.5 91 46.2
Zm00001eb114270 Zea mays HOM05D006126 ORTHO05D007792 8.1e-11 70.5 38 78.9
Zm00001eb200170 Zea mays HOM05D006126 ORTHO05D007792 8.1e-11 70.5 38 78.9
Thecc.05G109900 Theobroma cacao HOM05D006126 ORTHO05D007792 1.1e-10 70.1 37 83.8
Duzib093G1994 Durio zibethinus HOM05D006126 ORTHO05D007792 1.4e-10 69.7 37 83.8
EL10Ac5g11809 Beta vulgaris HOM05D006126 ORTHO05D007792 1.8e-10 69.3 37 78.4
COL.COLO4_29497 Corchorus olitorius HOM05D006126 ORTHO05D007792 1.8e-10 69.3 40 77.5
Mapoly0010s0015 Marchantia polymorpha HOM05D006126 ORTHO05D007792 3.1e-10 68.6 36 80.6
CBR_g48125 Chara braunii HOM05D006126 ORTHO05D007792 1.2e-09 66.6 37 73.0
Cre16.g651923 Chlamydomonas reinhardtii HOM05D006126 ORTHO05D007792 8.4e-08 60.5 62 48.4
Oeu063079.1 Olea europaea HOM05D006126 ORTHO05D007792 1.4e-07 59.7 40 67.5
SGA_v2.0_scaffold184G40037 Striga asiatica HOM05D006126 ORTHO05D007792 9.3e-07 57.0 30 83.3


User provided reference genes

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