Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008305 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 1.4e-110 402.9 200 100.0
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 1.1e-46 190.7 214 49.5
Actinidia20382 Actinidia chinensis HOM05D005593 ORTHO05D006515 5.5e-46 188.3 217 51.2
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 1.4e-44 183.7 218 49.1
Rhsim01G0099500 Rhododendron simsii HOM05D005593 ORTHO05D006515 4.0e-44 182.2 204 49.5
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 2.8e-42 176.0 218 49.1
CSS0003686 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 2.4e-41 172.9 218 49.5
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 1.6e-40 170.2 218 48.6
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 7.3e-38 161.4 206 48.5
TAR383G0262 Trochodendron aralioides HOM05D005593 ORTHO05D006515 1.6e-29 133.7 219 39.7
Cfa003241 Carpinus fangiana HOM05D005593 ORTHO05D006515 4.0e-28 129.0 213 40.8
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 2.0e-27 126.7 206 41.3
Haze_25764 Corylus avellana HOM05D005593 ORTHO05D006515 2.6e-27 126.3 214 41.1
GSVIVG01015371001 Vitis vinifera HOM05D005593 ORTHO05D006515 2.2e-26 123.2 221 38.9
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 3.2e-25 119.4 220 36.8
QL02p044157 Quercus lobata HOM05D005593 ORTHO05D006515 3.2e-25 119.4 220 37.3
RcHm_v2.0_Chr2g0090061 Rosa chinensis HOM05D005593 ORTHO05D006515 1.2e-24 117.5 223 35.0
Cpa.g.sc23.90 Carica papaya HOM05D005593 ORTHO05D006515 2.0e-24 116.7 180 37.2
FAN23G2457 Fragaria x ananassa HOM05D005593 ORTHO05D006515 2.0e-24 116.7 222 36.0
FAN19G1075 Fragaria x ananassa HOM05D005593 ORTHO05D006515 2.7e-24 116.3 222 34.7
FAN26G1119 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.0e-23 114.4 221 35.3
CiPaw.04G162900 Carya illinoinensis HOM05D005593 ORTHO05D006515 5.0e-23 112.1 206 34.0
FAN28G0021 Fragaria x ananassa HOM05D005593 ORTHO05D006515 8.6e-23 111.3 222 34.2
TWI63G0748 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 2.5e-22 109.8 212 34.9
CiPaw.03G229900 Carya illinoinensis HOM05D005593 ORTHO05D006515 4.3e-22 109.0 207 34.8
Cc06_g09850 Coffea canephora HOM05D005593 ORTHO05D006515 1.2e-21 107.5 217 34.6
Nn3g18070 Nelumbo nucifera HOM05D005593 ORTHO05D006515 1.2e-21 107.5 212 33.5
Potri.018G082300 Populus trichocarpa HOM05D005593 ORTHO05D006515 1.6e-21 107.1 212 34.9
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 1.6e-21 107.1 209 34.4
PSO832G1383 Papaver somniferum HOM05D005593 ORTHO05D006515 4.7e-21 105.5 216 31.5
Lj2g0010013 Lotus japonicus HOM05D005593 ORTHO05D006515 8.1e-21 104.8 198 34.3
COL.COLO4_34842 Corchorus olitorius HOM05D005593 ORTHO05D006515 2.3e-20 103.2 215 34.0
Gohir.A07G005700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 3.1e-20 102.8 209 34.9
PSO782G3244 Papaver somniferum HOM05D005593 ORTHO05D006515 3.1e-20 102.8 216 32.4
TWI34G0072 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 3.1e-20 102.8 205 35.1
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 6.8e-20 101.7 218 33.5
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 8.9e-20 101.3 210 35.2
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.5e-19 100.5 216 34.7
Duzib187G0236 Durio zibethinus HOM05D005593 ORTHO05D006515 2.0e-19 100.1 175 38.9
Nn2g11698 Nelumbo nucifera HOM05D005593 ORTHO05D006515 2.0e-19 100.1 206 33.0
Peaxi162Scf01363g00023 Petunia axillaris HOM05D005593 ORTHO05D006515 2.0e-19 100.1 182 36.8
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 2.0e-19 100.1 213 33.3
Lalb_Chr14g0371581 Lupinus albus HOM05D005593 ORTHO05D006515 2.6e-19 99.8 191 32.5
Sabra18G0070100 Salix brachista HOM05D005593 ORTHO05D006515 4.4e-19 99.0 210 35.7
Glyma.07G084900 Glycine max HOM05D005593 ORTHO05D006515 1.3e-18 97.4 225 28.4
Nitab4.5_0013892g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 1.3e-18 97.4 207 37.7
Nitab4.5_0009314g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 2.2e-18 96.7 171 36.8
arahy.Tifrunner.gnm1.ann1.31F9U3 Arachis hypogaea HOM05D005593 ORTHO05D006515 2.9e-18 96.3 218 31.7
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 4.9e-18 95.5 205 33.7
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 4.9e-18 95.5 216 29.6
Duzib150G1551 Durio zibethinus HOM05D005593 ORTHO05D006515 1.1e-17 94.4 209 34.0
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 1.4e-17 94.0 183 33.3
Glyma.09G192000 Glycine max HOM05D005593 ORTHO05D006515 1.4e-17 94.0 208 28.4
Gorai.010G072700 Gossypium raimondii HOM05D005593 ORTHO05D006515 2.4e-17 93.2 207 34.3
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 3.2e-17 92.8 176 36.9
Gohir.D06G062400 Gossypium hirsutum HOM05D005593 ORTHO05D006515 4.1e-17 92.4 207 34.3
Medtr6g087760 Medicago truncatula HOM05D005593 ORTHO05D006515 5.4e-17 92.0 234 30.3
Nitab4.5_0000097g0120 Nicotiana tabacum HOM05D005593 ORTHO05D006515 7.1e-17 91.7 216 34.7
Solyc07g032710.4 Solanum lycopersicum HOM05D005593 ORTHO05D006515 7.1e-17 91.7 218 34.9
Sopen07g016890 Solanum pennellii HOM05D005593 ORTHO05D006515 7.1e-17 91.7 217 35.5
Gohir.A06G063700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 9.2e-17 91.3 208 32.7
Rhsim01G0098000 Rhododendron simsii HOM05D005593 ORTHO05D006515 2.1e-16 90.1 82 58.5
TPR.G10037 Trifolium pratense HOM05D005593 ORTHO05D006515 2.1e-16 90.1 164 34.1
Ciclev10007444m.g Citrus clementina HOM05D005593 ORTHO05D006515 2.7e-16 89.7 172 36.6
Peaxi162Scf00231g00216 Petunia axillaris HOM05D005593 ORTHO05D006515 3.5e-16 89.4 205 36.6
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 7.8e-16 88.2 221 29.4
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 2.3e-15 86.7 219 30.1
arahy.Tifrunner.gnm1.ann1.F0KYD5 Arachis hypogaea HOM05D005593 ORTHO05D006515 5.1e-15 85.5 217 29.5
VMungo0464G1894 Vigna mungo HOM05D005593 ORTHO05D006515 5.1e-15 85.5 193 31.6
Solyc12g007140.3 Solanum lycopersicum HOM05D005593 ORTHO05D006515 8.6e-15 84.7 178 33.7
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 1.1e-14 84.3 229 34.5
Hund09560 Selenicereus undatus HOM05D005593 ORTHO05D006515 1.9e-14 83.6 175 32.0
Hund09124 Selenicereus undatus HOM05D005593 ORTHO05D006515 4.3e-14 82.4 203 29.6
Oeu064588.2 Olea europaea HOM05D005593 ORTHO05D006515 5.6e-14 82.0 187 32.6
PGSC0003DMG400000308 Solanum tuberosum HOM05D005593 ORTHO05D006515 7.3e-14 81.6 178 32.6
ClCG06G008720 Citrullus lanatus HOM05D005593 ORTHO05D006515 9.5e-14 81.3 207 30.9
Ah.14g082180 Amaranthus hybridus HOM05D005593 ORTHO05D006515 1.6e-13 80.5 229 27.9
AUR62010967 Chenopodium quinoa HOM05D005593 ORTHO05D006515 1.6e-13 80.5 226 29.2
Lalb_Chr22g0352731 Lupinus albus HOM05D005593 ORTHO05D006515 2.1e-13 80.1 216 26.4
Phvul.004G165100 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 2.8e-13 79.7 225 27.6
AUR62021477 Chenopodium quinoa HOM05D005593 ORTHO05D006515 3.6e-13 79.3 228 28.9
Sopen12g003130 Solanum pennellii HOM05D005593 ORTHO05D006515 3.6e-13 79.3 214 30.4
SalBow6G5362 Salvia bowleyana HOM05D005593 ORTHO05D006515 1.8e-12 77.0 206 28.6
Glyma.05G230300 Glycine max HOM05D005593 ORTHO05D006515 3.1e-12 76.3 184 29.9
Eucgr.C01030 Eucalyptus grandis HOM05D005593 ORTHO05D006515 5.2e-12 75.5 184 29.3
A07p07590 Brassica napus HOM05D005593 ORTHO05D006515 8.9e-12 74.7 222 29.7
BraA07t28551Z Brassica rapa HOM05D005593 ORTHO05D006515 8.9e-12 74.7 222 29.7
Glyma.08G037800 Glycine max HOM05D005593 ORTHO05D006515 1.2e-11 74.3 184 30.4
Nitab4.5_0002904g0040 Nicotiana tabacum HOM05D005593 ORTHO05D006515 1.5e-11 73.9 153 33.3
PGSC0003DMG400015636 Solanum tuberosum HOM05D005593 ORTHO05D006515 1.5e-11 73.9 170 36.5
BcaC06g35744 Brassica carinata HOM05D005593 ORTHO05D006515 3.4e-11 72.8 200 31.0
C07p11350 Brassica napus HOM05D005593 ORTHO05D006515 3.4e-11 72.8 200 31.0
BolC7t41613H Brassica oleracea HOM05D005593 ORTHO05D006515 3.4e-11 72.8 183 32.2
VMungo0251G1265 Vigna mungo HOM05D005593 ORTHO05D006515 3.4e-11 72.8 188 31.4
Aa31sc586G30 Aethionema arabicum HOM05D005593 ORTHO05D006515 7.6e-11 71.6 165 31.5
BcaB06g26676 Brassica carinata HOM05D005593 ORTHO05D006515 7.6e-11 71.6 166 32.5
Thhalv10002425m.g Eutrema salsugineum HOM05D005593 ORTHO05D006515 9.9e-11 71.2 203 31.0
CARHR100960 Cardamine hirsuta HOM05D005593 ORTHO05D006515 1.3e-10 70.9 165 31.5
Carub.0003s2504 Capsella rubella HOM05D005593 ORTHO05D006515 1.7e-10 70.5 226 29.6
MELO3C024628.2 Cucumis melo HOM05D005593 ORTHO05D006515 2.2e-10 70.1 207 27.5
CsaV3_1G024390 Cucumis sativus L. HOM05D005593 ORTHO05D006515 2.2e-10 70.1 205 28.3
MBI04_g19171_MAGBIO Magnolia biondii HOM05D005593 ORTHO05D006515 2.2e-10 70.1 190 29.5
AT3G24630 Arabidopsis thaliana HOM05D005593 ORTHO05D006515 6.4e-10 68.6 226 27.0
Sed0013092 Sechium edule HOM05D005593 ORTHO05D006515 6.4e-10 68.6 208 29.8
THA.LOC104804597 Tarenaya hassleriana HOM05D005593 ORTHO05D006515 6.4e-10 68.6 188 30.3
Sc08g0007580 Simmondsia chinensis HOM05D005593 ORTHO05D006515 8.4e-10 68.2 194 29.9
EL10Ac8g18455 Beta vulgaris HOM05D005593 ORTHO05D006515 1.1e-09 67.8 230 27.4
DCAR_012067 Daucus carota HOM05D005593 ORTHO05D006515 1.4e-09 67.4 201 29.9
Ah.09g231030 Amaranthus hybridus HOM05D005593 ORTHO05D006515 2.4e-09 66.6 216 26.4
DCAR_028703 Daucus carota HOM05D005593 ORTHO05D006515 4.1e-09 65.9 198 28.3
AL3G40252 Arabidopsis lyrata HOM05D005593 ORTHO05D006515 5.4e-09 65.5 219 27.4
Phvul.002G312500 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 7.1e-09 65.1 218 25.7
PGR142G3553 Punica granatum HOM05D005593 ORTHO05D006515 1.6e-08 63.9 164 30.5
Dinv05107 Davidia involucrata HOM05D005593 ORTHO05D006515 1.1e-06 57.8 36 63.9
Sp3g22410 Schrenkiella parvula HOM05D005593 ORTHO05D006515 1.5e-06 57.4 209 27.3
ECA234G4430 Erigeron canadensis HOM05D005593 ORTHO05D006515 1.9e-06 57.0 145 29.0
Aa31LG9G12770 Aethionema arabicum HOM05D006788 ORTHO05D008265 2.5e-06 56.6 215 25.1
Lsat_1_v5_gn_5_103481 Lactuca sativa HOM05D005593 ORTHO05D006515 2.5e-06 56.6 121 31.4
Peaxi162Scf00057g00131 Petunia axillaris HOM05D002076 ORTHO05D006515 2.5e-06 56.6 81 40.7
CsaV3_3G045060 Cucumis sativus L. HOM05D006788 ORTHO05D008265 5.6e-06 55.5 218 29.8


User provided reference genes

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