Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008295 Camellia sinensis var. sinensis HOM05D000811 ORTHO05D007840 5.6e-59 230.7 115 100.0
Rhsim08G0034300 Rhododendron simsii HOM05D000811 ORTHO05D007840 3.3e-35 151.8 103 76.7
Dinv40075 Davidia involucrata HOM05D000811 ORTHO05D007840 1.4e-33 146.4 103 69.9
Hma1.2p1_2281F.1_g318770 Hydrangea macrophylla HOM05D000811 ORTHO05D007840 9.0e-33 143.7 103 71.8
CSS0011847 Camellia sinensis var. sinensis HOM05D000811 ORTHO05D007840 1.5e-32 142.9 100 74.0
Hma1.2p1_0743F.1_g211546 Hydrangea macrophylla HOM05D000811 ORTHO05D007840 4.5e-32 141.4 101 72.3
Hma1.2p1_2281F.1_g318780 Hydrangea macrophylla HOM05D000811 ORTHO05D007840 4.5e-32 141.4 101 72.3
Lj2A466G44 Lonicera japonica HOM05D000811 ORTHO05D007840 2.2e-31 139.0 92 70.7
Lj2A474G39 Lonicera japonica HOM05D000811 ORTHO05D007840 2.2e-31 139.0 92 70.7
Cpa.g.sc6.232 Carica papaya HOM05D000811 ORTHO05D007840 6.5e-31 137.5 103 67.0
Solyc02g084030.3 Solanum lycopersicum HOM05D000811 ORTHO05D007840 1.1e-30 136.7 104 65.4
Sopen02g028830 Solanum pennellii HOM05D000811 ORTHO05D007840 2.5e-30 135.6 104 64.4
TAR625G1510 Trochodendron aralioides HOM05D000811 ORTHO05D007840 2.5e-30 135.6 86 73.3
Nn5g29276 Nelumbo nucifera HOM05D000811 ORTHO05D007840 3.2e-30 135.2 103 67.0
vmacro18419 Vaccinium macrocarpon HOM05D000811 ORTHO05D007840 3.2e-30 135.2 99 71.7
PGSC0003DMG400003634 Solanum tuberosum HOM05D000811 ORTHO05D007840 4.2e-30 134.8 104 64.4
GSVIVG01018799001 Vitis vinifera HOM05D000811 ORTHO05D007840 5.5e-30 134.4 87 75.9
Ciclev10026355m.g Citrus clementina HOM05D000811 ORTHO05D007840 9.3e-30 133.7 92 69.6
Oeu062503.1 Olea europaea HOM05D000811 ORTHO05D007840 9.3e-30 133.7 86 70.9
Thecc.01G020800 Theobroma cacao HOM05D000811 ORTHO05D007840 9.3e-30 133.7 103 67.0
CAN.G1671.2 Capsicum annuum HOM05D000811 ORTHO05D007840 1.2e-29 133.3 88 70.5
Nitab4.5_0004254g0050 Nicotiana tabacum HOM05D000811 ORTHO05D007840 2.1e-29 132.5 104 66.3
Lsat_1_v5_gn_4_146761 Lactuca sativa HOM05D000811 ORTHO05D007840 3.5e-29 131.7 92 68.5
ECA232G2345 Erigeron canadensis HOM05D000811 ORTHO05D007840 4.6e-29 131.3 79 77.2
Sc16g0002060 Simmondsia chinensis HOM05D000811 ORTHO05D007840 4.6e-29 131.3 86 70.9
Nitab4.5_0005721g0040 Nicotiana tabacum HOM05D000811 ORTHO05D007840 7.9e-29 130.6 109 60.6
HanXRQChr15g0487231 Helianthus annuus HOM05D000811 ORTHO05D007840 1.3e-28 129.8 91 69.2
CAN.G724.41 Capsicum annuum HOM05D000811 ORTHO05D007840 1.8e-28 129.4 90 68.9
Glyma.02G049400 Glycine max HOM05D000811 ORTHO05D007840 1.8e-28 129.4 89 70.8
QL06p033557 Quercus lobata HOM05D000811 ORTHO05D007840 3.9e-28 128.3 87 71.3
MSTRG.2702 Avicennia marina HOM05D000811 ORTHO05D007840 8.7e-28 127.1 88 69.3
SalBow3G3717 Salvia bowleyana HOM05D000811 ORTHO05D007840 1.5e-27 126.3 91 69.2
Cfa006960 Carpinus fangiana HOM05D000811 ORTHO05D007840 1.9e-27 125.9 92 69.6
VMungo0251G2049 Vigna mungo HOM05D000811 ORTHO05D007840 1.9e-27 125.9 87 70.1
CiPaw.07G057400 Carya illinoinensis HOM05D000811 ORTHO05D007840 2.5e-27 125.6 87 70.1
Duzib264G0346 Durio zibethinus HOM05D000811 ORTHO05D007840 2.5e-27 125.6 84 70.2
Thhalv10022823m.g Eutrema salsugineum HOM05D000811 ORTHO05D007840 3.3e-27 125.2 88 65.9
Glyma.16G129800 Glycine max HOM05D000811 ORTHO05D007840 3.3e-27 125.2 87 70.1
Aa31LG8G15210 Aethionema arabicum HOM05D000811 ORTHO05D007840 5.7e-27 124.4 103 58.3
CARHR108520 Cardamine hirsuta HOM05D000811 ORTHO05D007840 7.4e-27 124.0 92 64.1
Gohir.A12G060100 Gossypium hirsutum HOM05D000811 ORTHO05D007840 7.4e-27 124.0 103 62.1
Haze_03790 Corylus avellana HOM05D000811 ORTHO05D007840 9.6e-27 123.6 84 72.6
Lj4g0023417 Lotus japonicus HOM05D000811 ORTHO05D007840 9.6e-27 123.6 89 67.4
PSO541G4766 Papaver somniferum HOM05D000811 ORTHO05D007840 9.6e-27 123.6 87 71.3
Potri.007G012900 Populus trichocarpa HOM05D000811 ORTHO05D007840 9.6e-27 123.6 104 61.5
PGR119G1393 Punica granatum HOM05D000811 ORTHO05D007840 9.6e-27 123.6 92 66.3
Hund14040 Selenicereus undatus HOM05D000811 ORTHO05D007840 9.6e-27 123.6 88 68.2
THA.LOC104807489 Tarenaya hassleriana HOM05D000811 ORTHO05D007840 9.6e-27 123.6 86 66.3
Prupe.1G202800 Prunus persica HOM05D000811 ORTHO05D007840 1.6e-26 122.9 102 63.7
BcaB07g31695 Brassica carinata HOM05D000811 ORTHO05D007840 2.1e-26 122.5 81 67.9
TWI09G0870 Tripterygium wilfordii HOM05D000811 ORTHO05D007840 2.1e-26 122.5 91 67.0
AL3G51180 Arabidopsis lyrata HOM05D000811 ORTHO05D007840 2.8e-26 122.1 88 63.6
Sabra07G0009900 Salix brachista HOM05D000811 ORTHO05D007840 2.8e-26 122.1 104 61.5
AT2G18030 Arabidopsis thaliana HOM05D000811 ORTHO05D007840 3.7e-26 121.7 91 64.8
RcHm_v2.0_Chr0c32g0501631 Rosa chinensis HOM05D000811 ORTHO05D007840 3.7e-26 121.7 100 65.0
AUR62043612 Chenopodium quinoa HOM05D000811 ORTHO05D007840 4.8e-26 121.3 86 67.4
AUR62044454 Chenopodium quinoa HOM05D000811 ORTHO05D007840 4.8e-26 121.3 86 67.4
ClCG01G020180 Citrullus lanatus HOM05D000811 ORTHO05D007840 4.8e-26 121.3 98 61.2
Gohir.D12G060200 Gossypium hirsutum HOM05D000811 ORTHO05D007840 4.8e-26 121.3 103 61.2
Gorai.008G063300 Gossypium raimondii HOM05D000811 ORTHO05D007840 4.8e-26 121.3 103 61.2
Medtr8g076060 Medicago truncatula HOM05D000811 ORTHO05D007840 4.8e-26 121.3 105 62.9
SGA_v2.0_scaffold137G35079 Striga asiatica HOM05D000811 ORTHO05D007840 4.8e-26 121.3 87 71.3
PSO675G0258 Papaver somniferum HOM05D000811 ORTHO05D007840 6.3e-26 120.9 92 66.3
Migut.H01151 Erythranthe guttata HOM05D000811 ORTHO05D007840 8.2e-26 120.6 88 68.2
BolC9t54263H Brassica oleracea HOM05D000811 ORTHO05D007840 1.1e-25 120.2 86 64.0
BraA09t36813Z Brassica rapa HOM05D000811 ORTHO05D007840 1.1e-25 120.2 86 64.0
Carub.0003s3218 Capsella rubella HOM05D000811 ORTHO05D007840 1.1e-25 120.2 91 63.7
Sp3g31460 Schrenkiella parvula HOM05D000811 ORTHO05D007840 1.1e-25 120.2 91 64.8
arahy.Tifrunner.gnm1.ann1.IAHM14 Arachis hypogaea HOM05D000811 ORTHO05D007840 1.4e-25 119.8 86 67.4
arahy.Tifrunner.gnm1.ann1.JKZZ7D Arachis hypogaea HOM05D000811 ORTHO05D007840 1.4e-25 119.8 86 67.4
Manes.02G103100 Manihot esculenta HOM05D000811 ORTHO05D007840 1.8e-25 119.4 103 62.1
TPR.G30060 Trifolium pratense HOM05D000811 ORTHO05D007840 2.4e-25 119.0 89 66.3
BcaC04g22934 Brassica carinata HOM05D000811 ORTHO05D007840 3.1e-25 118.6 86 62.8
C09p13720 Brassica napus HOM05D000811 ORTHO05D007840 3.1e-25 118.6 86 62.8
Ca_22370_v3 Cicer arietinum L. HOM05D000811 ORTHO05D007840 3.1e-25 118.6 104 58.7
CsaV3_6G046980 Cucumis sativus L. HOM05D000811 ORTHO05D007840 3.1e-25 118.6 96 61.5
Psat4g098520 Pisum sativum HOM05D000811 ORTHO05D007840 3.1e-25 118.6 104 62.5
Atru.chr3.786 Acer truncatum HOM05D000811 ORTHO05D007840 4.1e-25 118.2 91 62.6
Peaxi162Scf00083g00821 Petunia axillaris HOM05D000811 ORTHO05D007840 4.1e-25 118.2 80 71.2
RcHm_v2.0_Chr3g0483661 Rosa chinensis HOM05D000811 ORTHO05D007840 4.1e-25 118.2 100 63.0
RcHm_v2.0_Chr3g0483821 Rosa chinensis HOM05D000811 ORTHO05D007840 5.3e-25 117.9 100 62.0
Cc07_g21120 Coffea canephora HOM05D000811 ORTHO05D007840 6.9e-25 117.5 92 65.2
COL.COLO4_21928 Corchorus olitorius HOM05D000811 ORTHO05D007840 6.9e-25 117.5 104 62.5
MELO3C007891.2 Cucumis melo HOM05D000811 ORTHO05D007840 6.9e-25 117.5 96 61.5
A09p11680 Brassica napus HOM05D000811 ORTHO05D007840 9.0e-25 117.1 86 61.6
Cc00_g23380 Coffea canephora HOM05D000811 ORTHO05D007840 9.0e-25 117.1 92 64.1
FAN05G3534 Fragaria x ananassa HOM05D000811 ORTHO05D007840 9.0e-25 117.1 101 62.4
FAN02G1033 Fragaria x ananassa HOM05D000811 ORTHO05D007840 1.2e-24 116.7 101 60.4
FvH4_6g24560 Fragaria vesca HOM05D000811 ORTHO05D007840 1.5e-24 116.3 101 60.4
FAN14G3764 Fragaria x ananassa HOM05D000811 ORTHO05D007840 1.5e-24 116.3 101 60.4
FAN09G1557 Fragaria x ananassa HOM05D000811 ORTHO05D007840 2.0e-24 115.9 101 61.4
Eucgr.J02417 Eucalyptus grandis HOM05D000811 ORTHO05D007840 2.6e-24 115.5 84 70.2
Lalb_Chr16g0391201 Lupinus albus HOM05D000811 ORTHO05D007840 2.6e-24 115.5 105 57.1
Sed0020033 Sechium edule HOM05D000811 ORTHO05D007840 3.4e-24 115.2 104 57.7
Phvul.003G260900 Phaseolus vulgaris HOM05D000811 ORTHO05D007840 5.9e-24 114.4 91 62.6
HPP92_025838 Vanilla planifolia HOM05D000811 ORTHO05D007840 5.9e-24 114.4 92 58.7
Lalb_Chr05g0229871 Lupinus albus HOM05D000811 ORTHO05D007840 1.0e-23 113.6 78 69.2
Duzib147G1611 Durio zibethinus HOM05D000811 ORTHO05D007840 1.7e-23 112.8 84 69.0
Ah.02g124470 Amaranthus hybridus HOM05D000811 ORTHO05D007840 2.9e-23 112.1 94 59.6
DCAR_021499 Daucus carota HOM05D000811 ORTHO05D007840 8.4e-23 110.5 80 67.5
Eucgr.J02409 Eucalyptus grandis HOM05D000811 ORTHO05D007840 8.4e-23 110.5 89 62.9
Actinidia22988 Actinidia chinensis HOM05D000811 ORTHO05D007840 9.3e-22 107.1 61 78.7
CDE08G1305 Ceratophyllum demersum HOM05D000811 ORTHO05D007840 1.6e-21 106.3 110 52.7
ATR0147G018 Amborella trichopoda HOM05D000811 ORTHO05D007840 5.1e-20 101.3 88 60.2
unitig_37.g12157 Utricularia gibba HOM05D000811 ORTHO05D007840 1.5e-19 99.8 75 62.7
Os06g0138100 Oryza sativa ssp. japonica HOM05D000811 ORTHO05D007840 1.6e-18 96.3 54 75.9
Zm00001eb377760 Zea mays HOM05D000811 ORTHO05D007840 4.8e-18 94.7 86 57.0
AagrBONN_evm.TU.Sc2ySwM_117.1381 Anthoceros agrestis HOM05D000811 ORTHO05D007840 8.2e-18 94.0 89 51.7
Mapoly0044s0097 Marchantia polymorpha HOM05D000811 ORTHO05D007840 6.9e-17 90.9 88 53.4
SMO239G0139 Selaginella moellendorffii HOM05D000811 ORTHO05D007840 2.0e-16 89.4 54 70.4
CBR_g40417 Chara braunii HOM05D000811 ORTHO05D007840 2.6e-16 89.0 94 45.7
CBR_g40629 Chara braunii HOM05D000811 ORTHO05D007840 7.7e-16 87.4 61 60.7
Pp3c19_10080 Physcomitrium patens HOM05D000811 ORTHO05D007840 3.2e-14 82.0 49 73.5
SMO239G0160 Selaginella moellendorffii HOM05D000811 ORTHO05D007840 3.0e-12 75.5 49 67.3
Haze_26512 Corylus avellana HOM05D000811 ORTHO05D001558 5.1e-12 74.7 59 54.2
SMO239G0133 Selaginella moellendorffii HOM05D000811 ORTHO05D007840 4.3e-11 71.6 51 64.7
Duzib138G0733 Durio zibethinus HOM05D000811 ORTHO05D011421 2.6e-08 62.4 84 41.7
COL.COLO4_09359 Corchorus olitorius HOM05D000811 ORTHO05D011421 3.4e-08 62.0 61 47.5
MCO08G038 Micromonas commoda HOM05D000811 ORTHO05D001558 2.2e-07 59.3 71 43.7
Cfa007901 Carpinus fangiana HOM05D000811 ORTHO05D011421 2.9e-07 58.9 61 47.5
Cc04_g10780 Coffea canephora HOM05D000811 ORTHO05D001558 2.9e-07 58.9 74 43.2
Cc07_g08630 Coffea canephora HOM05D000811 ORTHO05D011421 2.9e-07 58.9 87 36.8
Dinv34802 Davidia involucrata HOM05D000811 ORTHO05D011421 5.0e-07 58.2 63 42.9
Thecc.04G130000 Theobroma cacao HOM05D000811 ORTHO05D011421 5.0e-07 58.2 73 41.1
Ciclev10013530m.g Citrus clementina HOM05D000811 ORTHO05D011421 6.5e-07 57.8 74 40.5
Haze_14179 Corylus avellana HOM05D000811 ORTHO05D011421 4.2e-06 55.1 62 46.8
Actinidia36336 Actinidia chinensis HOM05D000811 ORTHO05D011421 5.5e-06 54.7 56 46.4
TAR622G0613 Trochodendron aralioides HOM05D000811 ORTHO05D011421 5.5e-06 54.7 61 44.3
TAR622G0940 Trochodendron aralioides HOM05D000811 ORTHO05D011421 5.5e-06 54.7 61 44.3
Cre08.g380300 Chlamydomonas reinhardtii HOM05D000811 ORTHO05D001558 7.2e-06 54.3 71 42.3
Manes.02G070400 Manihot esculenta HOM05D000811 ORTHO05D011421 9.4e-06 53.9 73 41.1


User provided reference genes

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