Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008274 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 7.6e-55 216.9 105 100.0
CSS0003025 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 7.2e-45 183.7 130 74.6
CSS0024703 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 9.4e-45 183.3 131 73.3
FAN22G1570 Fragaria x ananassa HOM05D000296 ORTHO05D000175 1.7e-25 119.4 155 43.9
Actinidia11793 Actinidia chinensis HOM05D007520 ORTHO05D009417 7.0e-24 114.0 136 49.3
CANSAT78G2519 Cannabis sativa HOM05D007520 ORTHO05D009417 7.7e-23 110.5 64 79.7
PSO478G1043 Papaver somniferum HOM05D007520 ORTHO05D009417 6.5e-22 107.5 136 44.9
Manes.17G089333 Manihot esculenta HOM05D007520 ORTHO05D009417 1.1e-21 106.7 66 78.8
TAR374G0082 Trochodendron aralioides HOM05D000504 ORTHO05D000403 1.1e-21 106.7 66 74.2
Ciclev10016556m.g Citrus clementina HOM05D007520 ORTHO05D009417 1.5e-21 106.3 80 62.5
Cc11_g05730 Coffea canephora HOM05D007520 ORTHO05D009417 1.5e-21 106.3 59 83.1
Hma1.2p1_0095F.1_g047520 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 4.2e-21 104.8 64 79.7
Atru.chr11.1007 Acer truncatum HOM05D007520 ORTHO05D009417 7.2e-21 104.0 64 76.6
Dinv08902 Davidia involucrata HOM05D007520 ORTHO05D009417 1.2e-20 103.2 58 82.8
Nn4g24547 Nelumbo nucifera HOM05D007520 ORTHO05D009417 1.2e-20 103.2 64 76.6
Sed0012329 Sechium edule HOM05D007520 ORTHO05D009417 1.6e-20 102.8 65 72.3
PSO017G5472 Papaver somniferum HOM05D007520 ORTHO05D009417 2.7e-20 102.1 65 70.8
Prupe.1G338000 Prunus persica HOM05D007520 ORTHO05D009417 3.6e-20 101.7 66 74.2
Gohir.A12G153900 Gossypium hirsutum HOM05D007520 ORTHO05D009417 4.7e-20 101.3 69 66.7
MSTRG.8107 Avicennia marina HOM05D007520 ORTHO05D009417 6.1e-20 100.9 67 70.1
COL.COLO4_27582 Corchorus olitorius HOM05D007520 ORTHO05D009417 6.1e-20 100.9 64 73.4
Gohir.D12G157000 Gossypium hirsutum HOM05D007520 ORTHO05D009417 6.1e-20 100.9 67 68.7
MD13G1015700 Malus domestica HOM05D007520 ORTHO05D009417 6.1e-20 100.9 64 75.0
Aqoxy5G01264 Aquilegia oxysepala HOM05D007520 ORTHO05D009417 1.0e-19 100.1 65 73.8
Solyc04g078500.1 Solanum lycopersicum HOM05D007520 ORTHO05D009417 1.0e-19 100.1 65 72.3
CAN.G1812.4 Capsicum annuum HOM05D007520 ORTHO05D009417 1.4e-19 99.8 66 71.2
MELO3C020056.2 Cucumis melo HOM05D007520 ORTHO05D009417 1.4e-19 99.8 63 71.4
Gorai.008G169800 Gossypium raimondii HOM05D007520 ORTHO05D009417 1.4e-19 99.8 64 71.9
CsaV3_5G012990 Cucumis sativus L. HOM05D007520 ORTHO05D009417 1.8e-19 99.4 63 71.4
Duzib268G1867 Durio zibethinus HOM05D007520 ORTHO05D009417 1.8e-19 99.4 87 57.5
RcHm_v2.0_Chr4g0433681 Rosa chinensis HOM05D007520 ORTHO05D009417 2.3e-19 99.0 66 72.7
SalBow2G3493 Salvia bowleyana HOM05D007520 ORTHO05D009417 2.3e-19 99.0 66 72.7
SalBow3G0394 Salvia bowleyana HOM05D007520 ORTHO05D009417 2.3e-19 99.0 66 72.7
SalBow4G2630 Salvia bowleyana HOM05D007520 ORTHO05D009417 2.3e-19 99.0 66 72.7
SalBow6G7185 Salvia bowleyana HOM05D007520 ORTHO05D009417 2.3e-19 99.0 66 72.7
TWI53G0076 Tripterygium wilfordii HOM05D007520 ORTHO05D009417 3.0e-19 98.6 64 70.3
Sopen04g032100 Solanum pennellii HOM05D007520 ORTHO05D009417 4.0e-19 98.2 65 70.8
QL03p039135 Quercus lobata HOM05D007520 ORTHO05D009417 5.2e-19 97.8 58 77.6
FAN17G2852 Fragaria x ananassa HOM05D007520 ORTHO05D009417 6.8e-19 97.4 66 71.2
Nitab4.5_0010118g0020 Nicotiana tabacum HOM05D007520 ORTHO05D009417 6.8e-19 97.4 66 71.2
Atru.BG.295.p Acer truncatum HOM05D007520 ORTHO05D009417 8.8e-19 97.1 64 71.9
FAN12G3032 Fragaria x ananassa HOM05D007520 ORTHO05D009417 8.8e-19 97.1 66 71.2
FAN12G3090 Fragaria x ananassa HOM05D007520 ORTHO05D009417 8.8e-19 97.1 66 71.2
PGSC0003DMG400041336 Solanum tuberosum HOM05D001905 ORTHO05D001820 1.2e-18 96.7 65 72.3
GSVIVG01011596001 Vitis vinifera HOM05D007520 ORTHO05D009417 1.2e-18 96.7 58 77.6
Lj2g0009613 Lotus japonicus HOM05D007520 ORTHO05D009417 1.5e-18 96.3 64 67.2
Nitab4.5_0004339g0060 Nicotiana tabacum HOM05D007520 ORTHO05D009417 2.0e-18 95.9 66 69.7
HPP92_016406 Vanilla planifolia HOM05D007520 ORTHO05D009417 2.0e-18 95.9 68 69.1
FvH4_4g26110 Fragaria vesca HOM05D007520 ORTHO05D009417 2.6e-18 95.5 66 71.2
Migut.L00619 Erythranthe guttata HOM05D007520 ORTHO05D009417 3.4e-18 95.1 65 69.2
Lsat_1_v5_gn_5_170921 Lactuca sativa HOM05D007520 ORTHO05D009417 4.4e-18 94.7 64 68.8
Psat6g100600 Pisum sativum HOM05D007520 ORTHO05D009417 1.3e-17 93.2 64 67.2
PGSC0003DMG400013121 Solanum tuberosum HOM05D007520 ORTHO05D009417 2.2e-17 92.4 64 68.8
SGA_v2.0_scaffold172G39028 Striga asiatica HOM05D007520 ORTHO05D009417 2.2e-17 92.4 61 70.5
arahy.Tifrunner.gnm1.ann1.RL07R4 Arachis hypogaea HOM05D007520 ORTHO05D009417 2.8e-17 92.0 65 67.7
ECA246G0416 Erigeron canadensis HOM05D007520 ORTHO05D009417 2.8e-17 92.0 60 70.0
Thecc.02G303900 Theobroma cacao HOM05D007520 ORTHO05D009417 2.8e-17 92.0 58 75.9
TPR.G35527 Trifolium pratense HOM05D007520 ORTHO05D009417 4.8e-17 91.3 64 67.2
BraA06t27270Z Brassica rapa HOM05D007520 ORTHO05D009417 8.3e-17 90.5 86 57.0
Thhalv10005705m.g Eutrema salsugineum HOM05D007520 ORTHO05D009417 8.3e-17 90.5 86 57.0
Medtr1g038820 Medicago truncatula HOM05D007520 ORTHO05D009417 1.4e-16 89.7 64 65.6
PGR042G3173 Punica granatum HOM05D007520 ORTHO05D009417 1.4e-16 89.7 66 60.6
Sp2g13330 Schrenkiella parvula HOM05D007520 ORTHO05D009417 2.4e-16 89.0 65 66.2
BcaC06g31264 Brassica carinata HOM05D007520 ORTHO05D009417 3.1e-16 88.6 63 69.8
A06p43940 Brassica napus HOM05D007520 ORTHO05D009417 5.4e-16 87.8 63 68.3
BolC7t43791H Brassica oleracea HOM05D007520 ORTHO05D009417 5.4e-16 87.8 86 54.7
Lalb_Chr10g0094861 Lupinus albus HOM05D007520 ORTHO05D009417 5.4e-16 87.8 64 64.1
HanXRQChr12g0379401 Helianthus annuus HOM05D007520 ORTHO05D009417 7.0e-16 87.4 58 69.0
Zm00001eb010100 Zea mays HOM05D007520 ORTHO05D009417 9.1e-16 87.0 66 54.5
C07p32740 Brassica napus HOM05D007520 ORTHO05D009417 2.0e-15 85.9 63 66.7
VMungo0251G1805 Vigna mungo HOM05D007520 ORTHO05D009417 2.7e-15 85.5 58 65.5
Carub.0005s0089 Capsella rubella HOM05D007520 ORTHO05D009417 5.9e-15 84.3 70 58.6
AT2G01905 Arabidopsis thaliana HOM05D007520 ORTHO05D009417 1.0e-14 83.6 65 61.5
THA.LOC104824117 Tarenaya hassleriana HOM05D007520 ORTHO05D009417 1.0e-14 83.6 86 45.3
CARHR144480 Cardamine hirsuta HOM05D007520 ORTHO05D009417 1.3e-14 83.2 65 61.5
Ah.11g041100 Amaranthus hybridus HOM05D007520 ORTHO05D009417 2.2e-14 82.4 66 57.6
Phvul.003G001900 Phaseolus vulgaris HOM05D007520 ORTHO05D009417 5.0e-14 81.3 64 57.8
AL5G11020 Arabidopsis lyrata HOM05D007520 ORTHO05D009417 3.2e-13 78.6 86 48.8
CiPaw.06G058600 Carya illinoinensis HOM05D007520 ORTHO05D009417 3.2e-13 78.6 64 64.1
Sc15g0004470 Simmondsia chinensis HOM05D007520 ORTHO05D009417 3.2e-13 78.6 65 55.4
EL10Ac1g01972 Beta vulgaris HOM05D007520 ORTHO05D009417 1.6e-12 76.3 66 51.5
Aa31LG2G8010 Aethionema arabicum HOM05D007520 ORTHO05D009417 1.8e-11 72.8 113 39.8
Hma1.2p1_0095F.1_g047530 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 5.2e-11 71.2 66 56.1
Rhsim09G0085600 Rhododendron simsii HOM05D007520 ORTHO05D009417 1.2e-10 70.1 42 81.0
AUR62036879 Chenopodium quinoa HOM05D007520 ORTHO05D009417 1.5e-10 69.7 61 50.8
DCAR_002655 Daucus carota HOM05D007520 ORTHO05D009417 8.3e-09 63.9 42 73.8
Glyma.14G224300 Glycine max HOM05D007520 ORTHO05D009417 3.1e-08 62.0 77 46.8
Lj3A859T72 Lonicera japonica HOM05D007520 ORTHO05D009417 1.6e-07 59.7 33 84.8
Pp3c10_19450 Physcomitrium patens HOM05D007520 ORTHO05D009417 8.6e-06 53.9 56 32.1


User provided reference genes

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