Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008262 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 3.1e-54 214.9 113 100.0
CSS0025713 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 9.1e-54 213.4 113 99.1
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 7.2e-43 177.2 106 84.0
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 1.2e-42 176.4 106 82.1
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 1.6e-42 176.0 106 84.0
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 2.1e-42 175.6 106 83.0
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 2.1e-42 175.6 106 83.0
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 3.6e-42 174.9 106 83.0
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 3.6e-42 174.9 106 82.1
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 4.7e-42 174.5 107 83.2
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 8.0e-42 173.7 106 82.1
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 1.4e-41 172.9 106 81.1
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 2.3e-41 172.2 106 81.1
Nitab4.5_0002176g0030 Nicotiana tabacum HOM05D004948 ORTHO05D005824 3.0e-41 171.8 107 80.4
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 3.0e-41 171.8 106 81.1
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 4.0e-41 171.4 105 81.9
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 5.2e-41 171.0 106 81.1
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 5.2e-41 171.0 106 83.0
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 5.2e-41 171.0 106 81.1
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 5.2e-41 171.0 105 82.9
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 6.8e-41 170.6 106 80.2
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 6.8e-41 170.6 106 80.2
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 6.8e-41 170.6 107 81.3
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 8.8e-41 170.2 107 80.4
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 1.2e-40 169.9 106 80.2
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 1.5e-40 169.5 105 81.0
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 2.0e-40 169.1 106 81.1
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 2.6e-40 168.7 105 83.8
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 3.4e-40 168.3 105 80.0
RcHm_v2.0_Chr1g0379991 Rosa chinensis HOM05D004948 ORTHO05D005824 3.4e-40 168.3 105 80.0
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 3.4e-40 168.3 106 79.2
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 4.4e-40 167.9 106 78.3
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 4.4e-40 167.9 106 78.3
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 7.5e-40 167.2 106 78.3
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 7.5e-40 167.2 105 80.0
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 9.8e-40 166.8 106 76.4
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 9.8e-40 166.8 106 76.4
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 9.8e-40 166.8 106 77.4
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 1.3e-39 166.4 105 81.0
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 1.3e-39 166.4 106 77.4
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 1.7e-39 166.0 106 77.4
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 1.7e-39 166.0 106 77.4
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 2.2e-39 165.6 106 75.5
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 2.2e-39 165.6 106 78.3
Actinidia31860 Actinidia chinensis HOM05D004948 ORTHO05D005824 2.8e-39 165.2 106 78.3
Ca_16670_v3 Cicer arietinum L. HOM05D004948 ORTHO05D005824 2.8e-39 165.2 106 79.2
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 3.7e-39 164.9 106 79.2
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 4.8e-39 164.5 106 74.5
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 4.8e-39 164.5 105 79.0
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 4.8e-39 164.5 106 80.2
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 6.3e-39 164.1 105 77.1
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 6.3e-39 164.1 105 77.1
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 6.3e-39 164.1 105 77.1
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 6.3e-39 164.1 106 80.2
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 6.3e-39 164.1 106 75.5
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 6.3e-39 164.1 106 78.3
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 8.3e-39 163.7 105 81.0
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 8.3e-39 163.7 105 77.1
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.4e-38 162.9 105 76.2
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.4e-38 162.9 105 76.2
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.4e-38 162.9 105 76.2
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 1.4e-38 162.9 104 80.8
DCAR_014528 Daucus carota HOM05D000121 ORTHO05D005824 1.8e-38 162.5 105 76.2
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 1.8e-38 162.5 106 74.5
Lj1g0003063 Lotus japonicus HOM05D004948 ORTHO05D005824 2.4e-38 162.2 106 76.4
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 3.1e-38 161.8 105 79.0
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 3.1e-38 161.8 105 76.2
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 3.1e-38 161.8 106 74.5
Gohir.D09G178100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 4.1e-38 161.4 105 78.1
Gorai.006G200200 Gossypium raimondii HOM05D004948 ORTHO05D005824 4.1e-38 161.4 105 78.1
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 5.4e-38 161.0 106 78.3
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 9.1e-38 160.2 106 74.5
TWI39G0355 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 9.1e-38 160.2 102 78.4
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 1.2e-37 159.8 107 73.8
Cc02_g01980 Coffea canephora HOM05D004948 ORTHO05D005824 1.2e-37 159.8 106 77.4
HPP92_024433 Vanilla planifolia HOM05D004948 ORTHO05D005824 2.0e-37 159.1 106 71.7
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 2.7e-37 158.7 107 73.8
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 2.7e-37 158.7 105 78.1
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 3.5e-37 158.3 108 74.1
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 7.7e-37 157.1 106 74.5
AL8G28010 Arabidopsis lyrata HOM05D004948 ORTHO05D005824 7.7e-37 157.1 106 70.8
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 7.7e-37 157.1 106 70.8
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 7.7e-37 157.1 110 73.6
Psat0s97g0080 Pisum sativum HOM05D004948 ORTHO05D005824 7.7e-37 157.1 106 73.6
Zm00001eb432120 Zea mays HOM05D004948 ORTHO05D005824 7.7e-37 157.1 106 74.5
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 1.0e-36 156.8 106 70.8
CARHR266350 Cardamine hirsuta HOM05D004948 ORTHO05D005824 1.0e-36 156.8 106 69.8
Gohir.A09G183400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.0e-36 156.8 105 75.2
Sp6g15460 Schrenkiella parvula HOM05D004948 ORTHO05D005824 1.0e-36 156.8 106 69.8
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 1.3e-36 156.4 106 71.7
Medtr3g090670 Medicago truncatula HOM05D004948 ORTHO05D005824 1.3e-36 156.4 106 74.5
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 1.7e-36 156.0 106 70.8
CAN.G204.5 Capsicum annuum HOM05D004948 ORTHO05D005824 2.2e-36 155.6 106 71.7
Thhalv10014692m.g Eutrema salsugineum HOM05D004948 ORTHO05D005824 2.2e-36 155.6 106 69.8
TPR.G33862 Trifolium pratense HOM05D004948 ORTHO05D005824 2.2e-36 155.6 106 72.6
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 2.9e-36 155.2 106 73.6
AT5G53310 Arabidopsis thaliana HOM05D004948 ORTHO05D005824 3.8e-36 154.8 106 68.9
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 3.8e-36 154.8 105 74.3
TWI23G0483 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 3.8e-36 154.8 105 72.4
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 5.0e-36 154.5 105 74.3
BcaB05g22031 Brassica carinata HOM05D004948 ORTHO05D005824 6.5e-36 154.1 106 68.9
Os01g0621700 Oryza sativa ssp. japonica HOM05D004948 ORTHO05D005824 6.5e-36 154.1 106 70.8
Ah.07g206090 Amaranthus hybridus HOM05D004948 ORTHO05D005824 8.5e-36 153.7 106 69.8
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 8.5e-36 153.7 105 71.4
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 1.5e-35 152.9 106 68.9
BcaC03g14431 Brassica carinata HOM05D004948 ORTHO05D005824 1.9e-35 152.5 106 67.9
C02p18470 Brassica napus HOM05D004948 ORTHO05D005824 1.9e-35 152.5 106 67.9
BolC2t07987H Brassica oleracea HOM05D004948 ORTHO05D005824 1.9e-35 152.5 106 67.9
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 1.9e-35 152.5 106 68.9
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 1.9e-35 152.5 101 78.2
Aa31LG3G9220 Aethionema arabicum HOM05D004948 ORTHO05D005824 2.5e-35 152.1 106 67.9
A02p11140 Brassica napus HOM05D004948 ORTHO05D005824 4.2e-35 151.4 106 67.0
BraA02t06177Z Brassica rapa HOM05D004948 ORTHO05D005824 4.2e-35 151.4 106 67.0
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 5.5e-35 151.0 108 70.4
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 5.5e-35 151.0 105 73.3
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 1.6e-34 149.4 105 71.4
Glyma.04G238900 Glycine max HOM05D004948 ORTHO05D005824 1.6e-34 149.4 106 74.5
DCAR_008996 Daucus carota HOM05D002473 ORTHO05D005824 2.1e-34 149.1 105 70.5
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 2.1e-34 149.1 97 75.3
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 6.1e-34 147.5 106 68.9
Glyma.06G124800 Glycine max HOM05D004948 ORTHO05D005824 8.0e-34 147.1 106 74.5
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 8.0e-34 147.1 106 68.9
Phvul.009G135700 Phaseolus vulgaris HOM05D004948 ORTHO05D005824 1.8e-33 146.0 106 71.7
arahy.Tifrunner.gnm1.ann1.NIM4HJ Arachis hypogaea HOM05D004948 ORTHO05D005824 2.3e-33 145.6 106 69.8
Hund27721 Selenicereus undatus HOM05D004948 ORTHO05D005824 3.0e-33 145.2 106 66.0
Hund27734 Selenicereus undatus HOM05D004948 ORTHO05D005824 3.0e-33 145.2 106 66.0
arahy.Tifrunner.gnm1.ann1.AMC2P5 Arachis hypogaea HOM05D004948 ORTHO05D005824 4.0e-33 144.8 105 70.5
CSS0002011 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.2e-32 143.3 87 81.6
VMungo1309G3087 Vigna mungo HOM05D004948 ORTHO05D005824 1.5e-32 142.9 106 68.9
Actinidia08617 Actinidia chinensis HOM05D004948 ORTHO05D005824 5.7e-32 141.0 101 75.2
CDE04G0161 Ceratophyllum demersum HOM05D004948 ORTHO05D005824 1.7e-31 139.4 106 64.2
unitig_747.g21853 Utricularia gibba HOM05D004948 ORTHO05D005824 2.8e-31 138.7 101 72.3
Lalb_Chr08g0240671 Lupinus albus HOM05D004948 ORTHO05D005824 4.9e-31 137.9 106 67.9
SEGI_09652 Sequoiadendron giganteum HOM05D004948 ORTHO05D005824 3.5e-29 131.7 106 62.3
SHI54648 Sapria himalayana HOM05D004948 ORTHO05D005824 3.3e-27 125.2 105 63.8
SHI54754 Sapria himalayana HOM05D004948 ORTHO05D005824 3.3e-27 125.2 105 63.8
Lj1P1012T60 Lonicera japonica HOM05D004948 ORTHO05D005824 4.3e-27 124.8 88 72.7
Mapoly0143s0028 Marchantia polymorpha HOM05D004948 ORTHO05D005824 1.7e-23 112.8 108 52.8
SMO361G0401 Selaginella moellendorffii HOM05D004948 ORTHO05D005824 8.3e-23 110.5 106 54.7
Pp3c8_900 Physcomitrium patens HOM05D004948 ORTHO05D005824 5.4e-22 107.8 109 53.2
AagrBONN_evm.TU.Sc2ySwM_362.1882 Anthoceros agrestis HOM05D004948 ORTHO05D005824 9.2e-22 107.1 107 53.3
CBR_g39340 Chara braunii HOM05D004948 ORTHO05D005824 2.7e-21 105.5 109 52.3
BcaC04g20470 Brassica carinata HOM05D004948 ORTHO05D005824 1.1e-19 100.1 106 50.0
C09p43150 Brassica napus HOM05D004948 ORTHO05D005824 5.6e-19 97.8 106 50.0
BolC9t57186H Brassica oleracea HOM05D004948 ORTHO05D005824 5.6e-19 97.8 106 50.0
BcaB08g35692 Brassica carinata HOM05D004948 ORTHO05D005824 6.6e-12 74.3 48 70.8
MCO05G504 Micromonas commoda HOM05D004948 ORTHO05D005824 2.3e-09 65.9 90 38.9


User provided reference genes

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