Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 3.5e-129 465.3 295 100.0
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 1.9e-90 336.7 301 63.5
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 4.0e-85 318.9 223 77.6
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 1.3e-83 313.9 223 74.9
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 5.4e-82 308.5 223 69.1
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 8.7e-80 301.2 285 57.9
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 3.3e-79 299.3 262 61.1
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 5.6e-79 298.5 221 67.9
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 7.3e-79 298.1 252 69.4
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 7.3e-79 298.1 222 71.2
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 1.2e-78 297.4 220 67.3
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 6.2e-78 295.0 201 72.6
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 1.4e-77 293.9 221 67.9
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 6.9e-77 291.6 249 70.3
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 2.0e-76 290.0 222 66.7
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 2.0e-76 290.0 220 63.6
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 2.6e-76 289.7 224 76.8
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 3.4e-76 289.3 288 53.5
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 3.4e-76 289.3 223 69.5
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 4.4e-76 288.9 264 56.8
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 5.8e-76 288.5 216 75.5
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 7.6e-76 288.1 264 56.8
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 7.6e-76 288.1 223 64.6
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 9.9e-76 287.7 234 62.8
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 9.9e-76 287.7 214 70.1
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 1.3e-75 287.3 255 60.4
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 1.7e-75 287.0 228 73.2
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 1.7e-75 287.0 224 62.9
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 1.7e-75 287.0 204 66.2
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 2.9e-75 286.2 212 65.1
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 6.4e-75 285.0 222 65.3
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 6.4e-75 285.0 209 66.5
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 6.4e-75 285.0 222 63.5
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 6.4e-75 285.0 241 65.1
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 6.4e-75 285.0 226 62.8
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 1.4e-74 283.9 226 76.1
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 3.2e-74 282.7 231 66.2
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 4.2e-74 282.3 249 65.1
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 1.6e-73 280.4 220 72.7
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 2.1e-73 280.0 219 66.7
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 3.5e-73 279.3 209 71.8
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 7.8e-73 278.1 225 61.8
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 7.8e-73 278.1 214 73.4
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 1.0e-72 277.7 224 60.7
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 3.0e-72 276.2 222 74.8
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 3.0e-72 276.2 222 74.8
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 3.0e-72 276.2 225 61.8
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 5.1e-72 275.4 218 61.9
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 1.9e-71 273.5 223 60.5
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 3.3e-71 272.7 236 63.6
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 4.3e-71 272.3 208 71.2
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 9.6e-71 271.2 219 62.1
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 2.1e-70 270.0 222 73.4
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 2.1e-70 270.0 222 73.4
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 2.8e-70 269.6 258 59.3
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 6.2e-70 268.5 220 65.5
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 6.2e-70 268.5 224 59.8
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 8.1e-70 268.1 223 68.2
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 1.4e-69 267.3 214 67.8
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 1.4e-69 267.3 221 58.4
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 2.4e-69 266.5 214 69.6
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 3.1e-69 266.2 208 69.7
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 9.0e-69 264.6 215 60.9
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 2.6e-68 263.1 216 68.1
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 3.4e-68 262.7 207 68.6
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 5.8e-68 261.9 205 76.1
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 3.8e-67 259.2 219 58.4
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 3.8e-67 259.2 223 70.4
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 8.4e-67 258.1 223 69.1
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 8.4e-67 258.1 223 69.1
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 9.3e-66 254.6 223 65.9
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 1.2e-65 254.2 217 59.0
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 4.6e-65 252.3 250 59.2
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 6.0e-65 251.9 222 59.0
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 1.0e-64 251.1 199 68.3
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 1.0e-64 251.1 202 62.4
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 1.8e-64 250.4 206 58.3
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 1.8e-64 250.4 243 53.1
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 3.0e-64 249.6 258 58.9
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 5.1e-64 248.8 199 75.9
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 6.7e-64 248.4 286 55.9
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 6.7e-64 248.4 285 56.1
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 2.5e-63 246.5 212 72.2
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 3.3e-63 246.1 223 64.1
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 3.3e-63 246.1 223 64.1
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 9.6e-63 244.6 212 67.5
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 2.1e-62 243.4 222 58.1
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 2.1e-62 243.4 285 56.1
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 3.7e-62 242.7 212 67.0
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 6.2e-62 241.9 222 55.9
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 8.1e-62 241.5 225 64.9
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 1.4e-61 240.7 225 64.9
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 1.4e-61 240.7 200 66.5
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 1.8e-61 240.4 223 58.7
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 1.8e-61 240.4 211 56.9
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 2.4e-61 240.0 225 64.4
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 6.9e-61 238.4 206 59.7
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 9.0e-61 238.0 219 55.7
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 2.6e-60 236.5 234 59.4
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 2.6e-60 236.5 202 69.3
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 1.7e-59 233.8 235 52.8
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 1.7e-59 233.8 222 52.3
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 4.9e-59 232.3 251 61.8
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 4.9e-59 232.3 251 61.8
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 6.4e-59 231.9 255 61.6
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 3.2e-58 229.6 232 61.2
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 4.2e-58 229.2 226 62.8
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 2.1e-57 226.9 210 64.8
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 1.1e-55 221.1 227 53.3
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 1.9e-55 220.3 210 63.8
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 2.5e-55 219.9 226 61.1
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 1.1e-53 214.5 195 52.3
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.4e-53 213.4 211 61.6
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.4e-53 213.4 211 61.6
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 2.4e-53 213.4 211 61.6
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 2.4e-53 213.4 203 68.0
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 4.0e-53 212.6 203 53.7
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 6.9e-53 211.8 211 61.1
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 2.0e-52 210.3 186 54.3
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 4.5e-52 209.1 156 76.3
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 6.5e-51 205.3 188 53.7
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 1.4e-50 204.1 210 58.6
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 1.4e-50 204.1 203 49.3
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 2.7e-49 199.9 206 67.5
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 2.7e-49 199.9 169 59.2
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 3.0e-48 196.4 209 49.3
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 3.0e-48 196.4 155 60.6
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 5.1e-48 195.7 169 76.3
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 6.7e-48 195.3 209 48.8
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 1.5e-47 194.1 201 51.2
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 1.5e-47 194.1 180 52.8
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 1.3e-46 191.0 181 61.9
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 2.6e-44 183.3 181 49.7
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 2.9e-43 179.9 209 47.4
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 1.1e-42 177.9 202 53.5
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 1.1e-42 177.9 202 53.5
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 1.9e-42 177.2 164 73.2
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 9.4e-42 174.9 114 73.7
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 5.1e-40 169.1 232 44.0
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 1.7e-38 164.1 267 37.5
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 2.2e-38 163.7 197 42.1
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 8.2e-38 161.8 217 42.9
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 1.1e-37 161.4 216 43.5
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 3.1e-37 159.8 183 45.9
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 1.2e-36 157.9 198 44.9
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 3.2e-34 149.8 206 38.3
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 5.5e-34 149.1 202 39.1
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 5.5e-34 149.1 202 39.1
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 1.4e-32 144.4 193 38.9
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 3.0e-32 143.3 213 36.6
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 2.0e-31 140.6 153 46.4
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 2.0e-31 140.6 203 37.9
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 2.0e-31 140.6 212 36.8
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 4.8e-30 136.0 220 35.0
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 6.5e-27 125.6 129 57.4
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 7.2e-26 122.1 131 51.1
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 4.7e-25 119.4 197 33.0
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 1.2e-20 104.8 199 34.2
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 2.0e-20 104.0 156 35.9
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 2.2e-19 100.5 156 34.6
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 5.0e-19 99.4 73 65.8
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 5.7e-15 85.9 62 72.6
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 2.2e-14 84.0 65 63.1
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 1.1e-13 81.6 62 61.3
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 3.1e-13 80.1 60 61.7
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 1.7e-11 74.3 157 31.2
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 2.5e-10 70.5 75 52.0
Duzib133G1105 Durio zibethinus HOM05D004265 ORTHO05D045180 9.4e-10 68.6 208 23.1
COL.COLO4_28325 Corchorus olitorius HOM05D004265 ORTHO05D005175 7.5e-07 58.9 39 69.2


User provided reference genes

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