Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008240 Camellia sinensis var. sinensis HOM05D007315 ORTHO05D008940 1.3e-302 1042.3 545 100.0
CSS0005699 Camellia sinensis var. sinensis HOM05D007315 ORTHO05D008940 1.4e-269 932.6 578 87.4
Rhsim09G0003400 Rhododendron simsii HOM05D007315 ORTHO05D008940 2.1e-124 450.3 582 50.3
Dinv33248 Davidia involucrata HOM05D007315 ORTHO05D008940 2.1e-111 407.1 578 48.8
Cfa008519 Carpinus fangiana HOM05D007315 ORTHO05D008940 1.2e-87 328.2 587 39.9
Haze_11126 Corylus avellana HOM05D007315 ORTHO05D008940 1.8e-86 324.3 589 39.4
CiPaw.02G125100 Carya illinoinensis HOM05D007315 ORTHO05D008940 6.3e-84 315.8 574 39.7
QL10p065726 Quercus lobata HOM05D007315 ORTHO05D008940 3.2e-80 303.5 599 38.6
QL10p064604 Quercus lobata HOM05D007315 ORTHO05D008940 2.7e-79 300.4 599 38.7
Potri.007G145400 Populus trichocarpa HOM05D007315 ORTHO05D008940 2.3e-78 297.4 599 38.2
Ciclev10019166m.g Citrus clementina HOM05D007315 ORTHO05D008940 5.1e-78 296.2 598 36.8
TAR362G0103 Trochodendron aralioides HOM05D007315 ORTHO05D008940 2.6e-77 293.9 459 41.0
Atru.chr3.1974 Acer truncatum HOM05D007315 ORTHO05D008940 3.3e-77 293.5 608 36.3
Manes.05G207100 Manihot esculenta HOM05D007315 ORTHO05D008940 1.1e-75 288.5 438 42.0
Duzib128G0490 Durio zibethinus HOM05D007315 ORTHO05D008940 7.0e-75 285.8 503 39.2
MD15G1142800 Malus domestica HOM05D007315 ORTHO05D008940 1.2e-74 285.0 452 42.7
TWI15G1252 Tripterygium wilfordii HOM05D007315 ORTHO05D008940 1.2e-74 285.0 501 39.1
Prupe.7G270200 Prunus persica HOM05D007315 ORTHO05D008940 2.9e-73 280.4 585 36.9
Potri.017G002200 Populus trichocarpa HOM05D007315 ORTHO05D008940 6.5e-73 279.3 590 37.1
CANSAT78G2341 Cannabis sativa HOM05D007315 ORTHO05D008940 8.5e-73 278.9 591 36.0
Hma1.2p1_1085F.1_g255400 Hydrangea macrophylla HOM05D007315 ORTHO05D008940 8.5e-73 278.9 444 43.0
RcHm_v2.0_Chr2g0084511 Rosa chinensis HOM05D007315 ORTHO05D008940 2.5e-72 277.3 596 36.4
Sabra07G0115600 Salix brachista HOM05D007315 ORTHO05D008940 2.1e-71 274.2 609 35.3
Thecc.05G001400 Theobroma cacao HOM05D007315 ORTHO05D008940 4.7e-71 273.1 455 41.1
Gorai.011G004300 Gossypium raimondii HOM05D007315 ORTHO05D008940 1.8e-70 271.2 447 40.7
GSVIVG01038254001 Vitis vinifera HOM05D007315 ORTHO05D008940 1.8e-70 271.2 588 37.6
FvH4_1g00220 Fragaria vesca HOM05D007315 ORTHO05D008940 4.4e-69 266.5 468 40.8
Nn1g09432 Nelumbo nucifera HOM05D007315 ORTHO05D008940 9.7e-69 265.4 627 37.2
Cpa.g.sc151.10 Carica papaya HOM05D007315 ORTHO05D008940 1.4e-67 261.5 482 39.0
FAN28G1745 Fragaria x ananassa HOM05D007315 ORTHO05D008940 1.8e-67 261.2 497 38.8
DCAR_027494 Daucus carota HOM05D007315 ORTHO05D008940 3.1e-67 260.4 459 39.2
Oeu018063.1 Olea europaea HOM05D007315 ORTHO05D008940 2.9e-65 253.8 484 37.8
Peaxi162Scf00057g00225 Petunia axillaris HOM05D007315 ORTHO05D008940 2.9e-65 253.8 434 40.8
Glyma.10G188000 Glycine max HOM05D007315 ORTHO05D008940 3.8e-65 253.4 594 35.4
Gohir.A10G003901 Gossypium hirsutum HOM05D007315 ORTHO05D008940 8.5e-65 252.3 450 39.1
Gohir.D10G003900 Gossypium hirsutum HOM05D007315 ORTHO05D008940 4.2e-64 250.0 453 38.2
COL.COLO4_23477 Corchorus olitorius HOM05D007315 ORTHO05D008940 7.2e-64 249.2 510 36.1
FAN23G0376 Fragaria x ananassa HOM05D007315 ORTHO05D008940 4.7e-63 246.5 594 35.5
Eucgr.A00422 Eucalyptus grandis HOM05D007315 ORTHO05D008940 6.1e-63 246.1 462 38.3
MELO3C020340.2 Cucumis melo HOM05D007315 ORTHO05D008940 8.0e-63 245.7 430 38.6
FAN26G2088 Fragaria x ananassa HOM05D007315 ORTHO05D008940 2.3e-62 244.2 590 34.6
FAN26G2097 Fragaria x ananassa HOM05D007315 ORTHO05D008940 2.3e-62 244.2 590 34.6
Sabra17G0006200 Salix brachista HOM05D007315 ORTHO05D008940 1.5e-61 241.5 579 35.8
ClCG06G009750 Citrullus lanatus HOM05D007315 ORTHO05D008940 2.0e-61 241.1 581 36.0
CsaV3_2G011220 Cucumis sativus L. HOM05D007315 ORTHO05D008940 9.7e-61 238.8 575 35.3
Phvul.007G128900 Phaseolus vulgaris HOM05D007315 ORTHO05D008940 2.2e-60 237.7 455 38.2
VMungo0720G0938 Vigna mungo HOM05D007315 ORTHO05D008940 1.1e-59 235.3 438 39.5
CiPaw.01G202000 Carya illinoinensis HOM05D007315 ORTHO05D008940 1.4e-59 235.0 403 40.2
Nitab4.5_0000160g0040 Nicotiana tabacum HOM05D007315 ORTHO05D008940 1.6e-58 231.5 431 39.9
Sed0008861 Sechium edule HOM05D007315 ORTHO05D008940 3.5e-58 230.3 440 37.5
AUR62023706 Chenopodium quinoa HOM05D007315 ORTHO05D008940 1.3e-57 228.4 596 34.1
Lj5g0028022 Lotus japonicus HOM05D007315 ORTHO05D008940 5.0e-57 226.5 448 37.9
Nitab4.5_0002789g0030 Nicotiana tabacum HOM05D007315 ORTHO05D008940 3.2e-56 223.8 432 39.1
Glyma.20G202800 Glycine max HOM05D007315 ORTHO05D008940 2.1e-55 221.1 575 34.3
PGSC0003DMG400020383 Solanum tuberosum HOM05D007315 ORTHO05D008940 2.7e-55 220.7 581 35.3
AUR62002486 Chenopodium quinoa HOM05D007315 ORTHO05D008940 8.0e-55 219.2 598 34.6
Sopen12g009190 Solanum pennellii HOM05D007315 ORTHO05D008940 6.8e-54 216.1 584 34.4
Solyc12g017970.1 Solanum lycopersicum HOM05D007315 ORTHO05D008940 2.6e-53 214.2 572 34.4
PGR042G2132 Punica granatum HOM05D007315 ORTHO05D008940 3.4e-53 213.8 590 32.5
Ca_09817_v3 Cicer arietinum L. HOM05D007315 ORTHO05D008940 2.8e-52 210.7 449 37.9
Lalb_Chr02g0150561 Lupinus albus HOM05D007315 ORTHO05D008940 1.4e-51 208.4 457 37.0
EL10Ac3g06171 Beta vulgaris HOM05D007315 ORTHO05D008940 1.2e-50 205.3 455 35.2
ECA238G3268 Erigeron canadensis HOM05D007315 ORTHO05D008940 5.9e-50 203.0 441 35.1
THA.LOC104804323 Tarenaya hassleriana HOM05D007315 ORTHO05D008940 1.7e-49 201.4 455 35.8
Atru.chr3.1981 Acer truncatum HOM05D007315 ORTHO05D008940 6.6e-49 199.5 357 38.1
PSO732G0261 Papaver somniferum HOM05D007315 ORTHO05D008940 4.2e-48 196.8 445 36.2
arahy.Tifrunner.gnm1.ann1.BRX18T Arachis hypogaea HOM05D007315 ORTHO05D008940 9.5e-48 195.7 424 38.0
arahy.Tifrunner.gnm1.ann1.K0K7GF Arachis hypogaea HOM05D007315 ORTHO05D008940 1.6e-47 194.9 452 36.5
THA.LOC104802348 Tarenaya hassleriana HOM05D007315 ORTHO05D008940 2.6e-45 187.6 456 34.4
SalBow3G0669 Salvia bowleyana HOM05D007315 ORTHO05D008940 7.5e-45 186.0 421 36.1
Psat6g133000 Pisum sativum HOM05D007315 ORTHO05D008940 1.6e-42 178.3 441 34.9
Medtr1g073930 Medicago truncatula HOM05D007315 ORTHO05D008940 5.9e-42 176.4 376 37.5
HanXRQChr14g0438301 Helianthus annuus HOM05D007315 ORTHO05D008940 7.8e-42 176.0 498 31.5
TPR.G26430 Trifolium pratense HOM05D007315 ORTHO05D008940 3.3e-40 170.6 438 35.4
MSTRG.24547 Avicennia marina HOM05D007315 ORTHO05D008940 4.7e-39 166.8 471 30.6
Ah.13g073150 Amaranthus hybridus HOM05D007315 ORTHO05D008940 3.4e-37 160.6 441 31.5
AL4G42870 Arabidopsis lyrata HOM05D007315 ORTHO05D008940 4.4e-37 160.2 592 29.1
MBI07_g42068_MAGBIO Magnolia biondii HOM05D007315 ORTHO05D008940 5.8e-37 159.8 526 31.2
AT2G43990 Arabidopsis thaliana HOM05D007315 ORTHO05D008940 2.2e-36 157.9 595 29.1
CDE04G0399 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 4.9e-36 156.8 450 31.8
Sp4g26080 Schrenkiella parvula HOM05D007315 ORTHO05D008940 8.3e-36 156.0 443 30.9
Sc19g0002390 Simmondsia chinensis HOM05D007315 ORTHO05D008940 8.3e-36 156.0 369 35.0
Ah.07g203260 Amaranthus hybridus HOM05D007315 ORTHO05D008940 3.2e-35 154.1 418 32.8
SGA_v2.0_scaffold25G11016 Striga asiatica HOM05D007315 ORTHO05D008940 9.2e-35 152.5 405 32.8
COL.COLO4_20289 Corchorus olitorius HOM05D007315 ORTHO05D008940 1.2e-34 152.1 266 36.5
Thhalv10001359m.g Eutrema salsugineum HOM05D007315 ORTHO05D008940 1.6e-34 151.8 597 29.0
Carub.0004s2655 Capsella rubella HOM05D007315 ORTHO05D008940 2.0e-34 151.4 585 29.6
SGA_v2.0_scaffold19G08894 Striga asiatica HOM05D007315 ORTHO05D008940 3.5e-34 150.6 411 32.4
CARHR139160 Cardamine hirsuta HOM05D007315 ORTHO05D008940 3.0e-33 147.5 554 28.9
MD00G1086900 Malus domestica HOM05D007315 ORTHO05D008940 1.5e-32 145.2 309 36.9
Aqoxy5G03722 Aquilegia oxysepala HOM05D007315 ORTHO05D008940 2.8e-31 141.0 474 29.3
Migut.N03024 Erythranthe guttata HOM05D007315 ORTHO05D008940 8.3e-28 129.4 572 29.4
A05p04140 Brassica napus HOM05D007315 ORTHO05D008940 8.6e-25 119.4 288 35.1
QL10p064445 Quercus lobata HOM05D007315 ORTHO05D008940 8.6e-25 119.4 262 35.9
BraA05t19400Z Brassica rapa HOM05D007315 ORTHO05D008940 2.5e-24 117.9 285 34.4
CDE07G0865 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 5.6e-24 116.7 398 29.9
HPP92_007592 Vanilla planifolia HOM05D007315 ORTHO05D008940 5.6e-24 116.7 427 28.6
C04p04910 Brassica napus HOM05D007315 ORTHO05D008940 1.6e-23 115.2 288 35.8
BolC4t22121H Brassica oleracea HOM05D007315 ORTHO05D008940 1.6e-23 115.2 288 35.8
ATR0743G232 Amborella trichopoda HOM05D007315 ORTHO05D008940 1.4e-22 112.1 224 39.7
Zm00001eb434100 Zea mays HOM05D019859 ORTHO05D008940 5.2e-22 110.2 471 29.7
Actinidia39246 Actinidia chinensis HOM05D007315 ORTHO05D008940 6.8e-22 109.8 293 34.8
Os11g0247500 Oryza sativa ssp. japonica HOM05D019859 ORTHO05D008940 1.6e-18 98.6 453 29.4
Duzib093G0367 Durio zibethinus HOM05D007315 ORTHO05D008940 3.5e-18 97.4 273 33.3
BcaC02g12347 Brassica carinata HOM05D007315 ORTHO05D008940 7.8e-18 96.3 278 34.2
Zm00001eb136730 Zea mays HOM05D019859 ORTHO05D008940 5.2e-14 83.6 368 28.3
unitig_578.g16246 Utricularia gibba HOM05D007315 ORTHO05D008940 4.4e-13 80.5 104 51.0
SEGI_20190 Sequoiadendron giganteum HOM05D007315 ORTHO05D008940 1.4e-06 58.9 138 34.8


User provided reference genes

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