Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 1.4e-309 1065.4 550 100.0
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 7.2e-197 691.0 548 69.3
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 6.2e-180 634.8 560 63.2
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 2.6e-178 629.4 553 63.8
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.6e-154 549.7 557 56.7
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.6e-154 549.7 557 56.7
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 2.1e-143 513.5 553 52.3
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 4.8e-140 502.3 540 55.0
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 6.2e-140 501.9 557 51.2
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 1.1e-139 501.1 548 53.1
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 2.0e-138 496.9 552 50.9
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 1.5e-133 480.7 544 52.4
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 1.1e-128 464.5 555 48.6
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 1.9e-125 453.8 546 48.0
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 3.3e-125 453.0 561 48.7
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 3.7e-124 449.5 544 47.8
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 1.3e-121 441.0 531 46.3
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 4.2e-120 436.0 535 46.9
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 3.9e-118 429.5 557 45.6
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 8.8e-118 428.3 451 52.5
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 1.4e-115 421.0 554 45.1
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 2.4e-115 420.2 527 47.1
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 5.3e-115 419.1 543 47.1
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 5.3e-115 419.1 540 44.1
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 9.1e-115 418.3 553 44.3
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 1.2e-114 417.9 534 44.6
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 5.0e-113 412.5 528 45.8
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 3.2e-112 409.8 548 44.9
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 5.5e-112 409.1 538 44.4
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 1.4e-110 404.4 539 45.1
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 7.7e-106 388.7 471 46.5
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 7.7e-106 388.7 556 43.7
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 2.9e-105 386.7 531 45.0
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 5.0e-105 386.0 483 46.8
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 6.5e-105 385.6 551 44.3
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 1.4e-104 384.4 553 42.1
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 1.4e-104 384.4 484 46.1
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 2.5e-104 383.6 532 44.5
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 4.2e-104 382.9 555 41.1
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 3.9e-102 376.3 537 42.1
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 5.2e-102 375.9 533 42.0
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.5e-101 374.4 582 41.8
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 2.0e-101 374.0 538 42.4
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 4.4e-101 372.9 546 42.9
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 9.7e-101 371.7 476 45.4
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 1.3e-100 371.3 538 42.0
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 2.2e-100 370.5 531 44.1
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 4.8e-100 369.4 495 44.0
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 8.2e-100 368.6 530 43.0
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 4.1e-99 366.3 530 42.8
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 5.9e-98 362.5 533 43.9
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.0e-97 361.7 516 42.6
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 2.2e-97 360.5 529 42.2
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 2.5e-96 357.1 548 42.3
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 1.6e-95 354.4 504 42.3
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 7.5e-93 345.5 554 39.7
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.0e-90 337.4 484 42.1
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 4.4e-85 319.7 546 39.7
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 3.7e-84 316.6 444 44.4
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.7e-82 310.5 504 39.3
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 9.5e-80 302.0 538 38.8
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 1.2e-79 301.6 548 36.1
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 3.6e-79 300.1 555 36.8
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 1.5e-77 294.7 562 38.6
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 5.7e-77 292.7 530 38.5
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.7e-76 291.2 536 36.4
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 8.3e-76 288.9 542 37.3
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 2.9e-73 280.4 541 36.0
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 3.9e-73 280.0 493 35.7
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 1.1e-72 278.5 495 36.2
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 2.5e-72 277.3 504 36.5
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 2.1e-71 274.2 542 35.6
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 2.1e-71 274.2 492 39.2
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 5.2e-70 269.6 488 37.1
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 8.9e-70 268.9 481 38.3
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 3.4e-69 266.9 499 37.7
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 2.4e-67 260.8 547 34.4
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 7.0e-67 259.2 284 50.4
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 9.2e-67 258.8 549 35.9
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 1.0e-65 255.4 533 35.6
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.7e-65 254.6 524 35.9
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 6.6e-65 252.7 495 33.5
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 8.6e-65 252.3 397 39.8
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.1e-64 251.9 524 35.5
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 1.5e-64 251.5 506 36.0
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 3.3e-64 250.4 394 40.1
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 3.3e-64 250.4 543 34.1
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 9.5e-64 248.8 542 33.6
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 2.8e-63 247.3 366 41.8
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 4.7e-63 246.5 501 34.5
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 8.0e-63 245.7 259 54.4
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 3.4e-61 240.4 501 34.1
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 3.4e-61 240.4 545 32.5
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 4.4e-61 240.0 497 33.8
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 5.8e-61 239.6 534 34.1
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 1.7e-60 238.0 509 33.0
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 2.9e-60 237.3 524 35.1
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 3.7e-60 236.9 529 34.4
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 6.4e-60 236.1 504 33.3
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 6.4e-60 236.1 350 40.6
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 6.4e-60 236.1 537 34.1
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 6.4e-60 236.1 279 48.0
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 1.1e-59 235.3 288 45.5
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 1.9e-59 234.6 279 46.6
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 2.4e-59 234.2 527 32.4
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 5.4e-59 233.0 541 33.8
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 7.0e-59 232.6 534 32.4
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.6e-58 231.5 513 33.1
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 1.6e-58 231.5 408 35.3
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 2.7e-58 230.7 509 34.8
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 2.7e-58 230.7 509 34.8
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 2.7e-58 230.7 497 32.6
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 2.7e-58 230.7 497 34.4
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 3.5e-58 230.3 529 33.1
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 6.0e-58 229.6 529 33.1
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 5.1e-57 226.5 282 45.4
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 6.6e-57 226.1 513 32.0
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 4.3e-56 223.4 561 32.6
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 4.3e-56 223.4 506 32.8
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 2.1e-55 221.1 549 33.3
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 2.3e-54 217.6 272 48.9
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 3.4e-53 213.8 550 29.8
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 9.9e-53 212.2 419 36.3
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 9.9e-53 212.2 506 31.2
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 2.9e-52 210.7 501 32.9
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 1.1e-51 208.8 519 32.2
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 2.4e-51 207.6 516 30.8
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 7.8e-50 202.6 251 47.8
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.3e-49 201.8 447 33.1
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 2.3e-49 201.1 298 39.9
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 4.7e-47 193.4 478 31.2
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 8.1e-47 192.6 529 29.5
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 5.2e-46 189.9 406 32.8
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 2.6e-45 187.6 507 29.2
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 7.6e-45 186.0 246 44.3
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 1.7e-44 184.9 415 35.4
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 6.4e-44 183.0 597 28.6
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 1.9e-43 181.4 605 29.4
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 1.6e-42 178.3 427 34.0
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 1.0e-41 175.6 275 43.6
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 1.7e-41 174.9 500 28.6
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 1.7e-41 174.9 280 38.9
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 1.7e-41 174.9 308 38.6
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 1.3e-39 168.7 527 29.6
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 1.4e-38 165.2 524 28.8
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 1.4e-38 165.2 260 43.1
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 1.8e-38 164.9 523 27.5
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 3.1e-38 164.1 495 27.5
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 2.6e-37 161.0 494 26.9
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 1.7e-36 158.3 519 27.9
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 2.9e-36 157.5 521 27.4
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 1.9e-35 154.8 500 29.6
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 3.2e-35 154.1 252 40.9
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 7.1e-35 152.9 521 27.3
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 9.3e-35 152.5 520 27.1
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 1.1e-32 145.6 272 34.2
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 8.1e-31 139.4 168 45.2
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 2.6e-29 134.4 168 44.6
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 2.2e-28 131.3 258 34.9
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 9.3e-27 125.9 260 34.6
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 1.5e-24 118.6 281 34.2
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 5.6e-24 116.7 271 32.1
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 7.4e-24 116.3 454 27.8
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 9.6e-24 115.9 164 39.6
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 1.6e-23 115.2 271 32.8
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 8.1e-23 112.8 259 32.0
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 3.1e-22 110.9 207 40.6
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 3.0e-17 94.4 261 27.2
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 8.7e-17 92.8 117 39.3
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 1.6e-15 88.6 139 38.8
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.6e-13 81.3 245 30.6
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 1.3e-12 79.0 142 36.6
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 5.5e-11 73.6 254 27.2
AagrBONN_evm.TU.Sc2ySwM_344.1097 Anthoceros agrestis HOM05D003538 ORTHO05D004376 2.3e-09 68.2 484 21.5
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 4.3e-08 63.9 141 29.1


User provided reference genes

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