Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008196 Camellia sinensis var. sinensis HOM05D007324 ORTHO05D007884 2.0e-60 235.7 129 100.0
CSS0048146 Camellia sinensis var. sinensis HOM05D007324 ORTHO05D007884 9.7e-60 233.4 129 98.4
Actinidia14815 Actinidia chinensis HOM05D007324 ORTHO05D007884 3.0e-29 132.1 127 63.8
Lj2A242T77 Lonicera japonica HOM05D007324 ORTHO05D007884 7.0e-26 120.9 130 60.0
Eucgr.E00290 Eucalyptus grandis HOM05D007324 ORTHO05D007884 5.9e-25 117.9 140 56.4
Sopen06g021310 Solanum pennellii HOM05D007324 ORTHO05D007884 7.3e-23 110.9 131 53.4
Oeu047787.1 Olea europaea HOM05D007324 ORTHO05D007884 1.2e-22 110.2 123 56.9
CiPaw.11G092000 Carya illinoinensis HOM05D007324 ORTHO05D007884 2.8e-22 109.0 137 56.2
Lsat_1_v5_gn_6_78560 Lactuca sativa HOM05D007324 ORTHO05D007884 2.8e-22 109.0 153 49.7
Glyma.17G155000 Glycine max HOM05D007324 ORTHO05D007884 3.6e-22 108.6 136 52.9
Ciclev10033018m.g Citrus clementina HOM05D007324 ORTHO05D007884 4.7e-22 108.2 143 50.3
Solyc06g061110.2 Solanum lycopersicum HOM05D007324 ORTHO05D007884 6.1e-22 107.8 131 53.4
Glyma.05G112000 Glycine max HOM05D007324 ORTHO05D007884 6.8e-21 104.4 134 50.0
ECA240G0465 Erigeron canadensis HOM05D007324 ORTHO05D007884 8.9e-21 104.0 134 52.2
HanXRQChr03g0084061 Helianthus annuus HOM05D007324 ORTHO05D007884 7.5e-20 100.9 138 52.9
Atru.chr6.1738 Acer truncatum HOM05D007324 ORTHO05D007884 9.8e-20 100.5 127 52.0
HanXRQChr02g0043531 Helianthus annuus HOM05D007324 ORTHO05D007884 2.2e-19 99.4 123 52.8
arahy.Tifrunner.gnm1.ann1.0E68DR Arachis hypogaea HOM05D007324 ORTHO05D007884 3.7e-19 98.6 135 48.9
arahy.Tifrunner.gnm1.ann1.69TWVD Arachis hypogaea HOM05D007324 ORTHO05D007884 3.7e-19 98.6 135 48.9
PGR042G1904 Punica granatum HOM05D007324 ORTHO05D007884 6.4e-19 97.8 131 50.4
PGSC0003DMG400002093 Solanum tuberosum HOM05D007324 ORTHO05D007884 1.1e-18 97.1 124 50.0
Migut.E01386 Erythranthe guttata HOM05D007324 ORTHO05D007884 4.1e-18 95.1 123 51.2
Phvul.003G230300 Phaseolus vulgaris HOM05D007324 ORTHO05D007884 1.2e-17 93.6 129 48.1
Cfa012419 Carpinus fangiana HOM05D007324 ORTHO05D007884 2.0e-17 92.8 123 50.4
Haze_08257 Corylus avellana HOM05D007324 ORTHO05D007884 3.5e-17 92.0 113 54.0
Actinidia09218 Actinidia chinensis HOM05D007324 ORTHO05D007884 6.6e-16 87.8 124 56.5
PSO478G0244 Papaver somniferum HOM05D007324 ORTHO05D007884 8.6e-16 87.4 172 41.9
PSO782G2910 Papaver somniferum HOM05D007324 ORTHO05D007884 1.5e-15 86.7 169 42.0
Lj4g0022663 Lotus japonicus HOM05D007324 ORTHO05D007884 2.8e-14 82.4 119 54.6
PSO782G1330 Papaver somniferum HOM05D007324 ORTHO05D007884 2.8e-14 82.4 172 41.3
Lalb_Chr16g0386011 Lupinus albus HOM05D007324 ORTHO05D007884 1.8e-13 79.7 119 46.2
TPR.G29033 Trifolium pratense HOM05D007324 ORTHO05D007884 3.1e-13 79.0 121 53.7
CSS0050429 Camellia sinensis var. sinensis HOM05D007324 ORTHO05D007884 5.2e-13 78.2 124 44.4
TWI81G0167 Tripterygium wilfordii HOM05D007324 ORTHO05D007884 5.2e-13 78.2 123 44.7
Cc08_g02520 Coffea canephora HOM05D007324 ORTHO05D007884 6.8e-13 77.8 105 52.4
Thhalv10009848m.g Eutrema salsugineum HOM05D007324 ORTHO05D007884 8.9e-13 77.4 115 49.6
MBI04_g22943_MAGBIO Magnolia biondii HOM05D007324 ORTHO05D007884 8.9e-13 77.4 87 64.4
SGA_v2.0_scaffold144G35830 Striga asiatica HOM05D007324 ORTHO05D007884 8.9e-13 77.4 115 48.7
Rhsim07G0125700 Rhododendron simsii HOM05D007324 ORTHO05D007884 1.2e-12 77.0 123 47.2
A08p09020 Brassica napus HOM05D007324 ORTHO05D007884 1.5e-12 76.6 108 50.0
BraA08t32903Z Brassica rapa HOM05D007324 ORTHO05D007884 1.5e-12 76.6 108 50.0
MD06G1032700 Malus domestica HOM05D007324 ORTHO05D007884 2.0e-12 76.3 119 47.1
Nitab4.5_0008428g0010 Nicotiana tabacum HOM05D007324 ORTHO05D007884 2.6e-12 75.9 125 50.4
DCAR_005623 Daucus carota HOM05D007324 ORTHO05D007884 4.4e-12 75.1 120 44.2
Psat4g078840 Pisum sativum HOM05D007324 ORTHO05D007884 4.4e-12 75.1 118 45.8
Medtr4g098480 Medicago truncatula HOM05D007324 ORTHO05D007884 5.8e-12 74.7 162 37.0
Gohir.D08G178000 Gossypium hirsutum HOM05D007324 ORTHO05D007884 7.5e-12 74.3 132 42.4
Ca_22071_v3 Cicer arietinum L. HOM05D007324 ORTHO05D007884 9.8e-12 73.9 118 53.4
Ah.07g200240 Amaranthus hybridus HOM05D007324 ORTHO05D007884 1.3e-11 73.6 94 52.1
Gorai.004G186200 Gossypium raimondii HOM05D007324 ORTHO05D007884 1.3e-11 73.6 132 41.7
CAN.G201.20 Capsicum annuum HOM05D007324 ORTHO05D007884 2.2e-11 72.8 132 39.4
Gohir.A08G157700 Gossypium hirsutum HOM05D007324 ORTHO05D007884 2.2e-11 72.8 123 44.7
vmacro22242 Vaccinium macrocarpon HOM05D007324 ORTHO05D007884 2.9e-11 72.4 101 50.5
BolC8t47935H Brassica oleracea HOM05D007324 ORTHO05D007884 3.7e-11 72.0 125 43.2
DCAR_008279 Daucus carota HOM05D007324 ORTHO05D007884 3.7e-11 72.0 125 47.2
CsaV3_3G001850 Cucumis sativus L. HOM05D007324 ORTHO05D007884 4.9e-11 71.6 128 41.4
Peaxi162Scf00460g00044 Petunia axillaris HOM05D007324 ORTHO05D007884 8.3e-11 70.9 126 46.0
Nn6g33613 Nelumbo nucifera HOM05D007324 ORTHO05D007884 2.4e-10 69.3 134 42.5
Peaxi162Scf00615g00021 Petunia axillaris HOM05D007324 ORTHO05D007884 2.4e-10 69.3 123 40.7
C05p32030 Brassica napus HOM05D007324 ORTHO05D007884 3.2e-10 68.9 115 46.1
BolC5t31929H Brassica oleracea HOM05D007324 ORTHO05D007884 3.2e-10 68.9 115 46.1
CDE12G0317 Ceratophyllum demersum HOM05D007324 ORTHO05D007884 3.2e-10 68.9 119 42.9
COL.COLO4_17062 Corchorus olitorius HOM05D007324 ORTHO05D007884 4.1e-10 68.6 146 37.7
BcaB04g17953 Brassica carinata HOM05D007324 ORTHO05D007884 1.2e-09 67.0 125 42.4
C05p32110 Brassica napus HOM05D007324 ORTHO05D007884 1.2e-09 67.0 135 41.5
BolC5t31940H Brassica oleracea HOM05D007324 ORTHO05D007884 1.2e-09 67.0 135 41.5
Thecc.03G229800 Theobroma cacao HOM05D007324 ORTHO05D007884 1.6e-09 66.6 129 48.1
MELO3C032260.2 Cucumis melo HOM05D007324 ORTHO05D007884 3.5e-09 65.5 140 39.3
Prupe.5G039400 Prunus persica HOM05D007324 ORTHO05D007884 6.0e-09 64.7 52 69.2
FAN13G0501 Fragaria x ananassa HOM05D007324 ORTHO05D007884 1.3e-08 63.5 143 39.2
Hma1.2p1_0585F.1_g183650 Hydrangea macrophylla HOM05D007324 ORTHO05D007884 1.7e-08 63.2 103 53.4
Dinv28942 Davidia involucrata HOM05D007324 ORTHO05D007884 2.3e-08 62.8 126 42.1
CANSAT21G2393 Cannabis sativa HOM05D007324 ORTHO05D007884 3.0e-08 62.4 134 40.3
Aa31LG2G13400 Aethionema arabicum HOM05D007324 ORTHO05D007884 3.9e-08 62.0 129 40.3
Manes.15G168800 Manihot esculenta HOM05D007324 ORTHO05D007884 3.9e-08 62.0 74 54.1
Cpa.g.sc18.65 Carica papaya HOM05D007324 ORTHO05D007884 5.0e-08 61.6 108 46.3
Aqoxy3G02405 Aquilegia oxysepala HOM05D007324 ORTHO05D007884 3.3e-07 58.9 56 64.3
SalBow1G4617 Salvia bowleyana HOM05D007324 ORTHO05D007884 5.6e-07 58.2 124 38.7
SalBow8G4924 Salvia bowleyana HOM05D007324 ORTHO05D007884 5.6e-07 58.2 124 38.7
FAN04G2965 Fragaria x ananassa HOM05D007324 ORTHO05D007884 9.5e-07 57.4 87 47.1
Aa31LG9G15320 Aethionema arabicum HOM05D011082 ORTHO05D007884 1.2e-06 57.0 78 48.7
FvH4_5g21830 Fragaria vesca HOM05D007324 ORTHO05D007884 1.6e-06 56.6 98 43.9
Manes.15G168900 Manihot esculenta HOM05D007324 ORTHO05D007884 1.6e-06 56.6 124 45.2
Sp1g28340 Schrenkiella parvula HOM05D007324 ORTHO05D007884 1.6e-06 56.6 113 40.7
ClCG10G001740 Citrullus lanatus HOM05D007324 ORTHO05D007884 2.1e-06 56.2 128 38.3
FAN18G2652 Fragaria x ananassa HOM05D007324 ORTHO05D007884 4.7e-06 55.1 87 46.0
Thhalv10017485m.g Eutrema salsugineum HOM05D011082 ORTHO05D007884 6.2e-06 54.7 80 46.2


User provided reference genes

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