Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008190 Camellia sinensis var. sinensis HOM05D006994 ORTHO05D008229 0.0e+00 1998.0 1001 100.0
Dinv06483 Davidia involucrata HOM05D006994 ORTHO05D008229 3.4e-309 1065.1 1021 59.4
Actinidia32524 Actinidia chinensis HOM05D006994 ORTHO05D008229 2.4e-307 1058.9 1025 59.3
Dinv12707 Davidia involucrata HOM05D006994 ORTHO05D008229 1.4e-299 1033.1 1036 57.6
Rhsim06G0121200 Rhododendron simsii HOM05D006994 ORTHO05D008229 2.2e-244 849.7 1028 51.9
vmacro23412 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 1.8e-233 813.5 1016 51.0
Actinidia11193 Actinidia chinensis HOM05D006994 ORTHO05D008229 1.2e-226 790.8 962 50.5
TAR627G0262 Trochodendron aralioides HOM05D006994 ORTHO05D008229 1.3e-207 727.6 1002 47.3
QL08p043727 Quercus lobata HOM05D006994 ORTHO05D008229 2.8e-199 699.9 1039 43.7
GSVIVG01000809001 Vitis vinifera HOM05D006994 ORTHO05D008229 7.2e-187 658.7 1005 43.2
Hma1.2p1_0036F.1_g023730 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 1.0e-185 654.8 950 45.4
Cfa022555 Carpinus fangiana HOM05D006994 ORTHO05D008229 1.1e-182 644.8 999 42.6
TAR629G2429 Trochodendron aralioides HOM05D006994 ORTHO05D008229 7.8e-181 638.6 1052 43.4
Thecc.01G159900 Theobroma cacao HOM05D006994 ORTHO05D008229 1.4e-166 591.3 1040 38.9
Prupe.3G170300 Prunus persica HOM05D006994 ORTHO05D008229 1.9e-155 554.3 1061 38.9
Duzib187G0002 Durio zibethinus HOM05D006994 ORTHO05D008229 8.7e-148 528.9 1041 38.0
Nn3g20985 Nelumbo nucifera HOM05D006994 ORTHO05D008229 3.8e-143 513.5 1040 36.4
Lj1A585G38 Lonicera japonica HOM05D006994 ORTHO05D008229 1.0e-140 505.4 1021 38.1
Duzib147G0646 Durio zibethinus HOM05D006994 ORTHO05D008229 3.3e-139 500.4 1040 36.3
COL.COLO4_33721 Corchorus olitorius HOM05D006994 ORTHO05D008229 1.8e-137 494.6 1044 35.6
CiPaw.03G188200 Carya illinoinensis HOM05D006994 ORTHO05D008229 3.4e-136 490.3 876 39.4
Ciclev10030533m.g Citrus clementina HOM05D006994 ORTHO05D008229 3.0e-132 477.2 1073 34.9
MD09G1155600 Malus domestica HOM05D006994 ORTHO05D008229 5.6e-131 473.0 1043 34.5
Atru.chr6.1474 Acer truncatum HOM05D006994 ORTHO05D008229 9.6e-131 472.2 988 36.4
Gohir.D09G005900 Gossypium hirsutum HOM05D006994 ORTHO05D008229 7.1e-126 456.1 1048 34.4
Gorai.006G007500 Gossypium raimondii HOM05D006994 ORTHO05D008229 7.1e-126 456.1 1048 34.4
RcHm_v2.0_Chr2g0150941 Rosa chinensis HOM05D006994 ORTHO05D008229 4.3e-123 446.8 1048 34.8
Nn6g34417 Nelumbo nucifera HOM05D006994 ORTHO05D008229 5.7e-123 446.4 1054 34.5
Cpa.g.sc50.71 Carica papaya HOM05D006994 ORTHO05D008229 5.3e-121 439.9 1031 35.5
Cc05_g09220 Coffea canephora HOM05D006994 ORTHO05D008229 6.3e-114 416.4 1034 34.0
FAN02G4438 Fragaria x ananassa HOM05D006994 ORTHO05D008229 2.7e-109 401.0 1054 33.2
FAN14G2472 Fragaria x ananassa HOM05D006994 ORTHO05D008229 4.6e-109 400.2 1056 33.6
CANSAT64G1952 Cannabis sativa HOM05D006994 ORTHO05D008229 7.9e-109 399.4 1010 34.4
FvH4_6g37820 Fragaria vesca HOM05D006994 ORTHO05D008229 3.9e-108 397.1 1056 33.4
FAN09G0855 Fragaria x ananassa HOM05D006994 ORTHO05D008229 1.1e-105 389.0 1043 32.9
Nitab4.5_0007153g0010 Nicotiana tabacum HOM05D006994 ORTHO05D008229 7.2e-102 376.3 1030 31.8
Gohir.A09G006700 Gossypium hirsutum HOM05D006994 ORTHO05D008229 5.1e-100 370.2 927 33.0
PGSC0003DMG400017294 Solanum tuberosum HOM05D006994 ORTHO05D008229 2.3e-92 344.7 1028 30.7
TWI59G0403 Tripterygium wilfordii HOM05D006994 ORTHO05D008229 4.4e-91 340.5 1047 30.4
Eucgr.A01960 Eucalyptus grandis HOM05D006994 ORTHO05D008229 9.7e-91 339.3 1072 30.7
Nitab4.5_0001121g0180 Nicotiana tabacum HOM05D006994 ORTHO05D008229 7.0e-89 333.2 1029 31.0
Sopen07g029270 Solanum pennellii HOM05D006994 ORTHO05D008229 4.5e-88 330.5 1031 30.9
Oeu041607.1 Olea europaea HOM05D006994 ORTHO05D008229 2.5e-86 324.7 810 32.5
CAN.G585.58 Capsicum annuum HOM05D006994 ORTHO05D008229 3.2e-86 324.3 1018 30.7
Peaxi162Scf00154g00620 Petunia axillaris HOM05D006994 ORTHO05D008229 5.5e-86 323.6 1004 31.6
DCAR_021306 Daucus carota HOM05D006994 ORTHO05D008229 1.4e-84 318.9 1212 29.6
CAN.G1332.1 Capsicum annuum HOM05D006994 ORTHO05D008229 2.4e-81 308.1 1018 30.2
CAN.G1481.2 Capsicum annuum HOM05D006994 ORTHO05D008229 2.2e-79 301.6 1013 30.0
Aqoxy4G00195 Aquilegia oxysepala HOM05D006994 ORTHO05D008229 2.7e-72 278.1 1067 30.6
Manes.02G085800 Manihot esculenta HOM05D006994 ORTHO05D008229 7.7e-72 276.6 837 31.4
Glyma.08G310800 Glycine max HOM05D006994 ORTHO05D008229 2.5e-70 271.6 1032 29.0
PSO541G2047 Papaver somniferum HOM05D006994 ORTHO05D008229 1.8e-65 255.4 999 28.3
Glyma.14G026900 Glycine max HOM05D006994 ORTHO05D008229 2.0e-64 251.9 1006 29.6
MSTRG.15058 Avicennia marina HOM05D006994 ORTHO05D008229 7.8e-64 250.0 962 28.3
VMungo0647G0009 Vigna mungo HOM05D006994 ORTHO05D008229 2.3e-63 248.4 986 30.1
Solyc07g055910.4 Solanum lycopersicum HOM05D006994 ORTHO05D008229 8.6e-63 246.5 733 31.0
SalBow7G4498 Salvia bowleyana HOM05D006994 ORTHO05D008229 1.5e-62 245.7 945 28.0
PSO675G3324 Papaver somniferum HOM05D006994 ORTHO05D008229 1.9e-62 245.4 995 27.8
Glyma.02G288000 Glycine max HOM05D006994 ORTHO05D008229 3.3e-62 244.6 1006 30.1
Phvul.008G190400 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 4.3e-62 244.2 973 30.0
MD17G1141700 Malus domestica HOM05D006994 ORTHO05D008229 3.6e-61 241.1 589 34.0
arahy.Tifrunner.gnm1.ann1.T2GFFQ Arachis hypogaea HOM05D006994 ORTHO05D008229 2.3e-60 238.4 968 28.6
arahy.Tifrunner.gnm1.ann1.0D28PY Arachis hypogaea HOM05D006994 ORTHO05D008229 4.9e-58 230.7 969 28.3
PGR042G2686 Punica granatum HOM05D006994 ORTHO05D008229 4.9e-58 230.7 1038 27.6
Ca_06289_v3 Cicer arietinum L. HOM05D006994 ORTHO05D008229 3.2e-57 228.0 965 29.2
Sed0021960 Sechium edule HOM05D006994 ORTHO05D008229 2.7e-56 224.9 1006 28.8
Lalb_Chr04g0248671 Lupinus albus HOM05D006994 ORTHO05D008229 4.6e-56 224.2 965 27.8
Psat0s1339g0080 Pisum sativum HOM05D006994 ORTHO05D008229 2.1e-53 215.3 986 27.4
TPR.G12670 Trifolium pratense HOM05D006994 ORTHO05D008229 2.8e-53 214.9 957 27.9
CsaV3_6G037970 Cucumis sativus L. HOM05D006994 ORTHO05D008229 3.6e-53 214.5 1027 27.7
ClCG09G022300 Citrullus lanatus HOM05D006994 ORTHO05D008229 1.4e-52 212.6 1017 27.0
LjContig00310g0024424 Lotus japonicus HOM05D006994 ORTHO05D008229 4.4e-51 207.6 1020 28.3
VMungo0540G1807 Vigna mungo HOM05D006994 ORTHO05D008229 5.8e-51 207.2 1051 26.7
MELO3C014460.2 Cucumis melo HOM05D006994 ORTHO05D008229 1.3e-50 206.1 1028 27.3
Sed0007753 Sechium edule HOM05D006994 ORTHO05D008229 1.2e-48 199.5 997 27.0
Glyma.18G104900 Glycine max HOM05D006994 ORTHO05D008229 9.5e-46 189.9 886 27.5
Sopen06g004440 Solanum pennellii HOM05D006994 ORTHO05D008229 1.1e-44 186.4 649 29.3
CDE02G3923 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 3.1e-44 184.9 1061 25.1
Medtr5g091810 Medicago truncatula HOM05D006994 ORTHO05D008229 1.1e-41 176.4 1027 26.5
Lalb_Chr17g0348341 Lupinus albus HOM05D006994 ORTHO05D008229 1.6e-40 172.6 788 27.8
Phvul.006G035100 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 2.7e-40 171.8 796 27.3
arahy.Tifrunner.gnm1.ann1.0VWG63 Arachis hypogaea HOM05D006994 ORTHO05D008229 7.3e-30 137.1 1044 25.0
ATR0602G060 Amborella trichopoda HOM05D006994 ORTHO05D008229 2.1e-29 135.6 1035 23.8
arahy.Tifrunner.gnm1.ann1.EW4W42 Arachis hypogaea HOM05D006994 ORTHO05D008229 7.6e-27 127.1 1038 24.3
CDE08G1216 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 1.1e-25 123.2 563 27.4
MSTRG.6762 Avicennia marina HOM05D006994 ORTHO05D008229 1.6e-24 119.4 866 24.0
vmacro12443 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 1.3e-21 109.8 111 58.6
Psat5g180160 Pisum sativum HOM05D006994 ORTHO05D008229 2.2e-18 99.0 350 26.3
Solyc06g009803.1 Solanum lycopersicum HOM05D006994 ORTHO05D008229 2.1e-16 92.4 182 36.8
Gohir.A09G006800 Gossypium hirsutum HOM05D006994 ORTHO05D008229 3.3e-14 85.1 104 48.1
FAN05G3500 Fragaria x ananassa HOM05D006994 ORTHO05D008229 1.4e-12 79.7 222 35.1
Migut.H02109 Erythranthe guttata HOM05D006994 ORTHO05D008229 1.0e-10 73.6 358 25.1
Glyma.18G105000 Glycine max HOM05D006994 ORTHO05D008229 2.1e-08 65.9 67 52.2
HPP92_005185 Vanilla planifolia HOM05D006994 ORTHO05D008229 2.1e-08 65.9 298 27.2
THA.LOC104804894 Tarenaya hassleriana HOM05D014107 ORTHO05D008229 2.3e-07 62.4 555 23.2
Phvul.006G035050 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 3.3e-06 58.5 56 53.6


User provided reference genes

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