Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008185 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 0.0e+00 1596.6 795 100.0
CSS0042623 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 0.0e+00 1243.4 865 78.0
CSS0043888 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 0.0e+00 1225.7 829 79.9
Rhsim03G0234900 Rhododendron simsii HOM05D004235 ORTHO05D005157 0.0e+00 1158.7 840 73.9
Dinv36730 Davidia involucrata HOM05D004235 ORTHO05D005157 0.0e+00 1139.0 865 71.6
vmacro06271 Vaccinium macrocarpon HOM05D004235 ORTHO05D005157 0.0e+00 1133.6 886 70.2
Lj7C671G7 Lonicera japonica HOM05D004235 ORTHO05D005157 0.0e+00 1132.9 816 73.2
Hma1.2p1_1074F.1_g254400 Hydrangea macrophylla HOM05D004235 ORTHO05D005157 0.0e+00 1128.6 840 71.9
Peaxi162Scf00498g00032 Petunia axillaris HOM05D004235 ORTHO05D005157 0.0e+00 1125.9 840 71.8
PGSC0003DMG402000346 Solanum tuberosum HOM05D004235 ORTHO05D005157 0.0e+00 1118.6 840 71.5
Nitab4.5_0003781g0020 Nicotiana tabacum HOM05D004235 ORTHO05D005157 0.0e+00 1117.8 840 71.1
CAN.G1241.9 Capsicum annuum HOM05D004235 ORTHO05D005157 0.0e+00 1115.1 840 70.6
Nitab4.5_0000540g0150 Nicotiana tabacum HOM05D004235 ORTHO05D005157 0.0e+00 1113.6 840 71.0
Solyc12g008710.2 Solanum lycopersicum HOM05D004235 ORTHO05D005157 0.0e+00 1112.4 840 71.2
Sopen12g003640 Solanum pennellii HOM05D004235 ORTHO05D005157 0.0e+00 1112.4 840 71.2
GSVIVG01015250001 Vitis vinifera HOM05D004235 ORTHO05D005157 0.0e+00 1108.6 840 70.8
Thecc.09G094700 Theobroma cacao HOM05D004235 ORTHO05D005157 0.0e+00 1107.4 840 69.9
QL02p063521 Quercus lobata HOM05D004235 ORTHO05D005157 0.0e+00 1096.3 840 70.7
Cc06_g10940 Coffea canephora HOM05D004235 ORTHO05D005157 0.0e+00 1095.9 840 70.0
Cfa003136 Carpinus fangiana HOM05D004235 ORTHO05D005157 0.0e+00 1090.5 838 69.7
Gohir.A05G028200 Gossypium hirsutum HOM05D004235 ORTHO05D005157 0.0e+00 1088.2 840 68.6
Haze_25867 Corylus avellana HOM05D004235 ORTHO05D005157 0.0e+00 1087.0 838 69.3
Gorai.009G030000 Gossypium raimondii HOM05D004235 ORTHO05D005157 0.0e+00 1086.6 840 68.5
Duzib168G2142 Durio zibethinus HOM05D004235 ORTHO05D005157 0.0e+00 1086.2 840 68.9
Migut.J00436 Erythranthe guttata HOM05D004235 ORTHO05D005157 0.0e+00 1084.7 838 68.4
Gohir.D05G029800 Gossypium hirsutum HOM05D004235 ORTHO05D005157 0.0e+00 1082.8 840 68.2
Nn8g38947 Nelumbo nucifera HOM05D004235 ORTHO05D005157 0.0e+00 1075.5 841 68.6
SGA_v2.0_scaffold62G21574 Striga asiatica HOM05D004235 ORTHO05D005157 5.4e-312 1073.5 857 66.4
CiPaw.03G220000 Carya illinoinensis HOM05D004235 ORTHO05D005157 1.1e-311 1072.8 840 69.0
MD15G1202300 Malus domestica HOM05D004235 ORTHO05D005157 1.1e-310 1069.7 838 68.6
HanXRQChr04g0112481 Helianthus annuus HOM05D004235 ORTHO05D005157 1.6e-309 1065.8 840 68.1
DCAR_028630 Daucus carota HOM05D004235 ORTHO05D005157 4.5e-309 1064.3 839 67.5
Oeu052124.2 Olea europaea HOM05D004235 ORTHO05D005157 4.5e-309 1064.3 841 68.5
CANSAT56G3324 Cannabis sativa HOM05D004235 ORTHO05D005157 1.0e-308 1063.1 839 67.6
Prupe.7G214900 Prunus persica HOM05D004235 ORTHO05D005157 1.0e-308 1063.1 864 66.4
ATR0789G124 Amborella trichopoda HOM05D004235 ORTHO05D005157 1.9e-307 1058.9 841 66.9
Glyma.05G223700 Glycine max HOM05D004235 ORTHO05D005157 3.3e-307 1058.1 840 67.9
ClCG11G001880 Citrullus lanatus HOM05D004235 ORTHO05D005157 5.6e-307 1057.4 840 68.0
CsaV3_2G001610 Cucumis sativus L. HOM05D004235 ORTHO05D005157 9.5e-307 1056.6 840 67.7
VMungo0251G2139 Vigna mungo HOM05D004235 ORTHO05D005157 2.8e-306 1055.0 840 67.0
Atru.chr7.1524 Acer truncatum HOM05D004235 ORTHO05D005157 4.7e-306 1054.3 840 67.7
MELO3C004614.2 Cucumis melo HOM05D004235 ORTHO05D005157 6.1e-306 1053.9 840 67.7
TWI34G1426 Tripterygium wilfordii HOM05D004235 ORTHO05D005157 1.4e-305 1052.7 840 67.4
RcHm_v2.0_Chr2g0092561 Rosa chinensis HOM05D004235 ORTHO05D005157 4.0e-305 1051.2 840 66.9
COL.COLO4_18249 Corchorus olitorius HOM05D004235 ORTHO05D005157 1.5e-304 1049.3 840 66.9
TAR383G0914 Trochodendron aralioides HOM05D004235 ORTHO05D005157 2.6e-304 1048.5 840 68.2
ECA236G4919 Erigeron canadensis HOM05D004235 ORTHO05D005157 5.8e-304 1047.3 840 67.0
TPR.G25478 Trifolium pratense HOM05D004235 ORTHO05D005157 1.3e-303 1046.2 840 66.9
PSO063G2511 Papaver somniferum HOM05D004235 ORTHO05D005157 1.1e-302 1043.1 840 66.8
Psat7g019200 Pisum sativum HOM05D004235 ORTHO05D005157 4.1e-302 1041.2 840 66.9
FAN28G2658 Fragaria x ananassa HOM05D004235 ORTHO05D005157 1.6e-301 1039.3 840 66.1
Lj4g0008017 Lotus japonicus HOM05D004235 ORTHO05D005157 2.7e-301 1038.5 840 66.5
FvH4_1g06790 Fragaria vesca HOM05D004235 ORTHO05D005157 6.0e-301 1037.3 840 66.2
FAN19G3193 Fragaria x ananassa HOM05D004235 ORTHO05D005157 7.8e-301 1036.9 840 66.1
Lsat_1_v5_gn_8_88100 Lactuca sativa HOM05D004235 ORTHO05D005157 1.3e-300 1036.2 828 67.3
FAN23G1406 Fragaria x ananassa HOM05D004235 ORTHO05D005157 6.6e-300 1033.9 840 65.8
FAN26G0912 Fragaria x ananassa HOM05D004235 ORTHO05D005157 1.9e-299 1032.3 848 65.4
THA.LOC104817747 Tarenaya hassleriana HOM05D004235 ORTHO05D005157 7.3e-299 1030.4 840 65.6
PSO832G0536 Papaver somniferum HOM05D004235 ORTHO05D005157 9.5e-299 1030.0 840 66.0
Manes.16G105300 Manihot esculenta HOM05D004235 ORTHO05D005157 4.7e-298 1027.7 738 71.8
FAN26G2547 Fragaria x ananassa HOM05D004235 ORTHO05D005157 1.1e-297 1026.5 848 65.3
Sc04g0004610 Simmondsia chinensis HOM05D004235 ORTHO05D005157 1.4e-297 1026.2 840 65.2
Aqoxy7G01320 Aquilegia oxysepala HOM05D004235 ORTHO05D005157 3.1e-297 1025.0 840 65.1
unitig_26.g9162 Utricularia gibba HOM05D004235 ORTHO05D005157 5.2e-297 1024.2 840 66.0
THA.LOC104811734 Tarenaya hassleriana HOM05D004235 ORTHO05D005157 9.8e-296 1020.0 838 64.4
Ciclev10010146m.g Citrus clementina HOM05D004235 ORTHO05D005157 4.9e-295 1017.7 832 66.0
HPP92_009154 Vanilla planifolia HOM05D004235 ORTHO05D005157 6.4e-295 1017.3 841 65.0
PGR102G2758 Punica granatum HOM05D004235 ORTHO05D005157 3.2e-294 1015.0 839 65.6
AL8G32560 Arabidopsis lyrata HOM05D004235 ORTHO05D005157 6.0e-293 1010.7 840 64.4
Sed0001781 Sechium edule HOM05D004235 ORTHO05D005157 7.8e-293 1010.4 738 71.5
Sp6g18480 Schrenkiella parvula HOM05D004235 ORTHO05D005157 3.0e-292 1008.4 840 64.5
TWI63G1589 Tripterygium wilfordii HOM05D004235 ORTHO05D005157 3.9e-292 1008.1 840 65.8
BcaC04g20058 Brassica carinata HOM05D004235 ORTHO05D005157 1.5e-291 1006.1 840 63.9
AT5G56730 Arabidopsis thaliana HOM05D004235 ORTHO05D005157 2.5e-291 1005.4 840 64.0
BcaB08g36065 Brassica carinata HOM05D004235 ORTHO05D005157 3.3e-291 1005.0 861 62.8
Carub.0008s1721 Capsella rubella HOM05D004235 ORTHO05D005157 3.3e-291 1005.0 840 64.0
BraA10t43498Z Brassica rapa HOM05D004235 ORTHO05D005157 4.3e-291 1004.6 841 64.0
Eucgr.C03689 Eucalyptus grandis HOM05D004235 ORTHO05D005157 4.3e-291 1004.6 840 64.6
BolC9t57680H Brassica oleracea HOM05D004235 ORTHO05D005157 3.6e-290 1001.5 841 63.9
Aa31LG3G12550 Aethionema arabicum HOM05D004235 ORTHO05D005157 3.1e-289 998.4 838 63.7
C09p48300 Brassica napus HOM05D004235 ORTHO05D005157 3.1e-289 998.4 841 63.6
A10p14070 Brassica napus HOM05D004235 ORTHO05D005157 4.0e-289 998.0 841 63.6
CARHR270480 Cardamine hirsuta HOM05D004235 ORTHO05D005157 5.2e-289 997.7 840 63.7
AUR62027475 Chenopodium quinoa HOM05D004235 ORTHO05D005157 2.0e-288 995.7 840 63.1
EL10Ac8g19244 Beta vulgaris HOM05D004235 ORTHO05D005157 2.6e-288 995.3 867 62.4
arahy.Tifrunner.gnm1.ann1.VZDV7L Arachis hypogaea HOM05D004235 ORTHO05D005157 7.5e-288 993.8 840 64.2
arahy.Tifrunner.gnm1.ann1.00M5T5 Arachis hypogaea HOM05D004235 ORTHO05D005157 1.3e-287 993.0 861 63.0
AUR62034005 Chenopodium quinoa HOM05D004235 ORTHO05D005157 3.2e-286 988.4 847 62.6
Hund06688 Selenicereus undatus HOM05D004235 ORTHO05D005157 2.1e-285 985.7 841 63.7
Glyma.08G030800 Glycine max HOM05D004235 ORTHO05D005157 7.8e-285 983.8 840 63.8
Phvul.002G305500 Phaseolus vulgaris HOM05D004235 ORTHO05D005157 3.6e-282 974.9 713 70.7
Thhalv10012682m.g Eutrema salsugineum HOM05D004235 ORTHO05D005157 2.6e-280 968.8 699 70.5
Medtr8g101950 Medicago truncatula HOM05D004235 ORTHO05D005157 7.8e-277 957.2 812 64.7
Thecc.09G094500 Theobroma cacao HOM05D004235 ORTHO05D005157 8.7e-276 953.7 840 62.4
Thecc.09G094600 Theobroma cacao HOM05D004235 ORTHO05D005157 3.3e-275 951.8 840 61.4
Duzib150G0514 Durio zibethinus HOM05D004235 ORTHO05D005157 1.3e-271 939.9 840 60.8
Ca_17388_v3 Cicer arietinum L. HOM05D004235 ORTHO05D005157 1.7e-271 939.5 837 62.1
Duzib168G1665 Durio zibethinus HOM05D004235 ORTHO05D005157 1.2e-269 933.3 840 61.4
Gohir.A08G244500 Gossypium hirsutum HOM05D004235 ORTHO05D005157 7.3e-267 924.1 840 59.9
Gohir.D08G265400 Gossypium hirsutum HOM05D004235 ORTHO05D005157 3.6e-266 921.8 840 59.6
Gorai.004G283400 Gossypium raimondii HOM05D004235 ORTHO05D005157 1.8e-265 919.5 840 59.5
Zm00001eb162240 Zea mays HOM05D004235 ORTHO05D005157 2.1e-253 879.4 681 68.6
Mapoly0007s0115 Marchantia polymorpha HOM05D004235 ORTHO05D005157 1.7e-247 859.8 863 54.5
Migut.J00437 Erythranthe guttata HOM05D004235 ORTHO05D005157 6.5e-247 857.8 873 55.9
SMO268G0025 Selaginella moellendorffii HOM05D004235 ORTHO05D005157 5.7e-243 844.7 868 52.2
Pp3c19_10200 Physcomitrium patens HOM05D004235 ORTHO05D005157 2.9e-239 832.4 863 52.4
Sc18g0001680 Simmondsia chinensis HOM05D004235 ORTHO05D005157 9.4e-238 827.4 840 54.4
COL.COLO4_18247 Corchorus olitorius HOM05D004235 ORTHO05D005157 3.9e-236 822.0 842 54.3
Sc18g0001660 Simmondsia chinensis HOM05D004235 ORTHO05D005157 4.7e-221 771.9 812 52.0
COL.COLO4_18244 Corchorus olitorius HOM05D004235 ORTHO05D005157 1.4e-220 770.4 836 52.5
Ah.09g230260 Amaranthus hybridus HOM05D004235 ORTHO05D005157 3.0e-220 769.2 840 50.8
Hund09051 Selenicereus undatus HOM05D004235 ORTHO05D005157 5.3e-217 758.4 847 51.4
AUR62033265 Chenopodium quinoa HOM05D004235 ORTHO05D005157 3.5e-216 755.7 841 50.9
EL10Ac8g18336 Beta vulgaris HOM05D004235 ORTHO05D005157 5.0e-215 751.9 840 50.2
AUR62021351 Chenopodium quinoa HOM05D004235 ORTHO05D005157 5.0e-215 751.9 840 50.5
CBR_g39508 Chara braunii HOM05D004235 ORTHO05D005157 5.9e-208 728.4 872 46.4
CSS0028903 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 5.7e-195 685.3 397 89.2
COL.COLO4_18248 Corchorus olitorius HOM05D004235 ORTHO05D005157 9.2e-185 651.4 812 49.3
Cpa.g.sc2319.2 Carica papaya HOM05D004235 ORTHO05D005157 6.6e-175 618.6 436 73.2
COL.COLO4_18245 Corchorus olitorius HOM05D004235 ORTHO05D005157 1.6e-168 597.4 804 46.5
Lalb_Chr09g0331751 Lupinus albus HOM05D004235 ORTHO05D005157 4.8e-133 479.6 495 57.2
Cpa.g.sc78.62 Carica papaya HOM05D004235 ORTHO05D005157 5.7e-126 456.1 313 76.0
Os01g0558850 Oryza sativa ssp. japonica HOM05D004235 ORTHO05D005157 7.7e-123 445.7 457 55.6
MCO05G244 Micromonas commoda HOM05D004235 ORTHO05D005157 2.0e-115 421.0 859 33.2
Lalb_Chr09g0331731 Lupinus albus HOM05D004235 ORTHO05D005157 7.5e-102 375.9 252 76.2
SalBow6G3097 Salvia bowleyana HOM05D004235 ORTHO05D005157 1.3e-101 375.2 362 58.8
Pp3c22_21190 Physcomitrium patens HOM05D004235 ORTHO05D005157 1.8e-92 344.7 485 42.3
SEGI_18611 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 1.6e-91 341.7 308 55.5
SEGI_16235 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 2.3e-82 311.2 235 66.4
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 6.6e-74 283.1 238 63.0
Aa31LG3G12660 Aethionema arabicum HOM05D004235 ORTHO05D005157 3.9e-66 257.3 220 63.6
SEGI_08113 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 2.5e-65 254.6 234 58.1
CSS0031019 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 2.0e-62 245.0 160 78.1
RcHm_v2.0_Chr2g0091881 Rosa chinensis HOM05D004235 ORTHO05D005157 1.4e-60 238.8 279 52.3
SGA_v2.0_scaffold354G49755 Striga asiatica HOM05D004235 ORTHO05D005157 1.1e-57 229.2 181 64.6
SGA_v2.0_scaffold21G09333 Striga asiatica HOM05D004235 ORTHO05D005157 3.2e-52 211.1 184 59.8
Aa31LG3G12570 Aethionema arabicum HOM05D004235 ORTHO05D005157 1.7e-45 188.7 189 54.0
SEGI_40851 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 1.3e-37 162.5 133 57.1
MBI12_g34172_MAGBIO Magnolia biondii HOM05D004235 ORTHO05D005157 2.9e-37 161.4 137 59.9
PGSC0003DMG400037643 Solanum tuberosum HOM05D004235 ORTHO05D005157 9.6e-33 146.4 632 25.5
C02p28510 Brassica napus HOM05D004235 ORTHO05D005157 3.1e-31 141.4 108 64.8
BolC2t08892H Brassica oleracea HOM05D004235 ORTHO05D005157 3.1e-31 141.4 108 64.8
MBI12_g07780_MAGBIO Magnolia biondii HOM05D004235 ORTHO05D005157 5.8e-30 137.1 92 67.4
BcaC03g15257 Brassica carinata HOM05D004235 ORTHO05D005157 2.4e-28 131.7 79 75.9
HanXRQChr07g0193421 Helianthus annuus HOM05D004235 ORTHO05D005157 7.9e-27 126.7 102 62.7
RcHm_v2.0_Chr2g0091891 Rosa chinensis HOM05D004235 ORTHO05D005157 4.0e-23 114.4 151 48.3
Aa31LG3G12610 Aethionema arabicum HOM05D004235 ORTHO05D005157 6.5e-21 107.1 68 73.5
MBI14_g38886_MAGBIO Magnolia biondii HOM05D004235 ORTHO05D005157 1.4e-15 89.4 56 69.6
SEGI_41273 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 2.9e-13 81.6 146 41.8
MBI14_g45694_MAGBIO Magnolia biondii HOM05D004235 ORTHO05D005157 8.5e-13 80.1 47 74.5
MBI14_g11330_MAGBIO Magnolia biondii HOM05D004235 ORTHO05D005157 1.1e-12 79.7 47 72.3
Lalb_Chr09g0331741 Lupinus albus HOM05D004235 ORTHO05D005157 1.2e-11 76.3 55 72.7
CSS0038548 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 7.9e-11 73.6 43 79.1
Cre16.g647500 Chlamydomonas reinhardtii HOM05D004235 ORTHO05D005157 3.9e-10 71.2 96 37.5
RcHm_v2.0_Chr6g0274801 Rosa chinensis HOM05D004235 ORTHO05D026109 8.7e-10 70.1 53 60.4
CsaV3_2G009400 Cucumis sativus L. HOM05D003632 ORTHO05D005497 1.4e-07 62.8 320 23.4
MELO3C008771.2 Cucumis melo HOM05D003632 ORTHO05D005497 2.4e-07 62.0 320 23.4
THA.LOC104806863 Tarenaya hassleriana HOM05D003632 ORTHO05D005497 3.1e-07 61.6 319 23.8
TWI38G0156 Tripterygium wilfordii HOM05D003632 ORTHO05D005497 4.1e-07 61.2 320 23.1
Lsat_1_v5_gn_7_31540 Lactuca sativa HOM05D003632 ORTHO05D005497 5.3e-07 60.8 209 26.3
PGSC0003DMG400043958 Solanum tuberosum HOM05D004235 ORTHO05D005157 5.3e-07 60.8 132 30.3
Hma1.2p1_0471F.1_g159520 Hydrangea macrophylla HOM05D003632 ORTHO05D005497 6.9e-07 60.5 307 24.4
Cpa.g.sc2319.1 Carica papaya HOM05D004235 ORTHO05D005157 9.1e-07 60.1 41 75.6
SalBow1G1353 Salvia bowleyana HOM05D003632 ORTHO05D005497 9.1e-07 60.1 319 22.6
TAR381G0543 Trochodendron aralioides HOM05D003632 ORTHO05D005497 9.1e-07 60.1 318 23.6
CAN.G843.30 Capsicum annuum HOM05D003632 ORTHO05D005497 1.2e-06 59.7 321 22.4
Peaxi162Scf00314g00434 Petunia axillaris HOM05D003632 ORTHO05D005497 2.0e-06 58.9 322 22.7
PGSC0003DMG400038772 Solanum tuberosum HOM05D004235 ORTHO05D005157 2.0e-06 58.9 198 27.3
Eucgr.F03633 Eucalyptus grandis HOM05D003632 ORTHO05D005497 2.6e-06 58.5 273 24.9
THA.LOC104813211 Tarenaya hassleriana HOM05D003632 ORTHO05D005497 3.4e-06 58.2 321 22.7
FvH4_7g03800 Fragaria vesca HOM05D003632 ORTHO05D005497 4.5e-06 57.8 312 22.8
FAN06G1218 Fragaria x ananassa HOM05D003632 ORTHO05D005497 4.5e-06 57.8 312 22.8
MBI01_g09379_MAGBIO Magnolia biondii HOM05D003632 ORTHO05D005497 4.5e-06 57.8 145 29.7
DCAR_003535 Daucus carota HOM05D003632 ORTHO05D005497 5.9e-06 57.4 164 27.4
Dinv03487 Davidia involucrata HOM05D003632 ORTHO05D005497 5.9e-06 57.4 321 23.4
CDE06G0366 Ceratophyllum demersum HOM05D003632 ORTHO05D005497 7.7e-06 57.0 164 26.8
Migut.D01195 Erythranthe guttata HOM05D003632 ORTHO05D005497 7.7e-06 57.0 318 21.7
SEGI_09422 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 7.7e-06 57.0 36 75.0


User provided reference genes

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