Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.7e-140 502.7 263 100.0
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 3.1e-137 491.9 263 97.7
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 8.0e-69 264.6 280 55.0
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 5.4e-65 251.9 287 54.0
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 3.4e-59 232.6 288 51.4
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 7.5e-59 231.5 282 52.8
Actinidia19731 Actinidia chinensis HOM05D004973 ORTHO05D006119 5.8e-51 205.3 270 52.2
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 4.3e-46 189.1 296 42.2
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 9.5e-46 188.0 267 46.8
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 8.9e-44 181.4 271 43.5
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 9.9e-43 177.9 296 41.9
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 1.1e-41 174.5 287 41.5
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 1.7e-39 167.2 258 46.5
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 1.7e-39 167.2 292 40.1
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 5.6e-38 162.2 265 45.7
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 9.5e-38 161.4 266 42.5
vmacro20083 Vaccinium macrocarpon HOM05D004973 ORTHO05D006119 1.6e-37 160.6 262 47.3
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 8.1e-37 158.3 238 44.1
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 1.8e-36 157.1 282 41.1
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 5.2e-36 155.6 240 43.3
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 2.6e-35 153.3 272 41.9
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 4.4e-35 152.5 272 42.3
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 5.8e-35 152.1 240 42.9
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 1.1e-33 147.9 260 41.9
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 1.9e-33 147.1 302 38.7
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 2.4e-33 146.7 277 39.7
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 1.6e-32 144.1 256 41.0
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 2.1e-32 143.7 317 35.3
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 2.7e-32 143.3 297 37.0
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 6.0e-32 142.1 273 36.6
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 7.8e-32 141.7 316 37.7
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 7.8e-32 141.7 255 40.8
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.3e-31 141.0 277 39.7
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 3.0e-31 139.8 259 40.9
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 2.5e-30 136.7 256 37.9
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 2.5e-30 136.7 269 37.9
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 4.3e-30 136.0 254 38.6
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 5.6e-30 135.6 167 52.1
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 7.3e-30 135.2 269 37.9
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 1.2e-29 134.4 242 39.7
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.6e-29 134.0 251 37.1
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 2.1e-29 133.7 277 38.3
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 4.7e-29 132.5 261 35.6
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 1.1e-28 131.3 251 36.3
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 1.4e-28 131.0 228 43.4
RhsimUnG0120800 Rhododendron simsii HOM05D004973 ORTHO05D006119 2.4e-28 130.2 234 43.2
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 5.2e-28 129.0 246 35.8
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 9.0e-28 128.3 278 34.5
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 1.2e-27 127.9 277 37.9
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 1.5e-27 127.5 281 37.0
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 1.5e-27 127.5 279 34.8
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 2.0e-27 127.1 285 37.5
Nitab4.5_0007045g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 2.6e-27 126.7 219 42.9
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 4.4e-27 125.9 267 42.3
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 1.7e-26 124.0 250 40.4
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 4.9e-26 122.5 308 34.1
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 8.4e-26 121.7 287 35.5
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 1.1e-25 121.3 252 39.3
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 1.4e-25 120.9 250 40.0
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 3.2e-25 119.8 247 39.7
CAN.G867.2 Capsicum annuum HOM05D004973 ORTHO05D006119 5.4e-25 119.0 210 38.6
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 1.0e-23 114.8 300 33.7
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 4.3e-22 109.4 265 34.7
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 5.6e-22 109.0 185 42.2
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 5.6e-22 109.0 257 33.9
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 9.6e-22 108.2 273 34.4
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 1.6e-21 107.5 279 32.6
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 1.1e-20 104.8 160 45.0
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.4e-20 104.4 217 37.8
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 1.4e-20 104.4 302 31.1
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 3.1e-20 103.2 266 34.2
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 5.8e-19 99.0 258 31.4
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 5.8e-19 99.0 174 39.1
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 5.8e-19 99.0 324 30.2
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 1.7e-18 97.4 265 32.5
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 6.4e-18 95.5 255 35.7
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 8.4e-18 95.1 260 34.6
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 8.4e-18 95.1 259 32.8
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 1.1e-17 94.7 253 32.0
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 1.1e-17 94.7 251 35.9
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 1.4e-17 94.4 144 41.7
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.4e-17 93.6 104 52.9
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 3.2e-17 93.2 170 40.6
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 4.2e-17 92.8 255 33.3
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 9.3e-17 91.7 267 34.8
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 1.2e-16 91.3 193 37.3
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 1.6e-16 90.9 207 38.6
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 3.5e-16 89.7 265 33.6
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 7.9e-16 88.6 167 43.7
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 5.1e-15 85.9 159 40.9
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 8.7e-15 85.1 132 47.0
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 1.1e-14 84.7 244 33.2
MELO3C009296.2 Cucumis melo HOM05D004973 ORTHO05D006119 1.5e-14 84.3 244 33.2
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 2.5e-14 83.6 86 55.8
CAN.G608.34 Capsicum annuum HOM05D004973 ORTHO05D006119 3.3e-14 83.2 229 35.8
MBI05_g16176_MAGBIO Magnolia biondii HOM05D004973 ORTHO05D006119 3.3e-14 83.2 76 57.9
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 5.6e-14 82.4 113 44.2
ClCG10G020720 Citrullus lanatus HOM05D004973 ORTHO05D006119 7.4e-14 82.0 254 33.1
Glyma.13G135200 Glycine max HOM05D004973 ORTHO05D006119 7.4e-14 82.0 230 33.5
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 7.4e-14 82.0 172 39.0
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 9.6e-14 81.6 172 39.5
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 9.6e-14 81.6 118 45.8
EL10Ac7g17266 Beta vulgaris HOM05D004973 ORTHO05D006119 2.1e-13 80.5 271 31.7
unitig_60.g25816 Utricularia gibba HOM05D004973 ORTHO05D006119 2.1e-13 80.5 236 33.9
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 2.8e-13 80.1 93 51.6
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 4.8e-13 79.3 165 38.8
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 1.4e-12 77.8 150 38.0
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 1.4e-12 77.8 173 39.3
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 1.4e-12 77.8 173 39.3
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 1.8e-12 77.4 154 42.9
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 1.8e-12 77.4 152 42.1
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 3.1e-12 76.6 173 38.2
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 3.1e-12 76.6 103 47.6
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 5.3e-12 75.9 82 51.2
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 6.9e-12 75.5 305 29.8
PGR004G0295 Punica granatum HOM05D004973 ORTHO05D006119 1.2e-11 74.7 256 29.7
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 1.2e-11 74.7 109 45.9
RhsimUnG0120900 Rhododendron simsii HOM05D004973 ORTHO05D006119 1.2e-11 74.7 53 67.9
HPP92_001696 Vanilla planifolia HOM05D004973 ORTHO05D006119 1.5e-11 74.3 237 30.8
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 2.0e-11 73.9 101 45.5
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 2.0e-11 73.9 173 41.0
Lalb_Chr02g0153461 Lupinus albus HOM05D004973 ORTHO05D006119 2.0e-11 73.9 95 49.5
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 2.6e-11 73.6 79 51.9
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 3.4e-11 73.2 165 38.8
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 4.5e-11 72.8 146 35.6
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 7.6e-11 72.0 149 39.6
Zm00001eb012960 Zea mays HOM05D004973 ORTHO05D006119 7.6e-11 72.0 229 31.4
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 1.3e-10 71.2 73 53.4
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 1.3e-10 71.2 73 53.4
arahy.Tifrunner.gnm1.ann1.X85SHR Arachis hypogaea HOM05D004973 ORTHO05D006119 3.2e-09 66.6 64 54.7
Sed0025194 Sechium edule HOM05D004973 ORTHO05D006119 4.2e-09 66.2 128 38.3
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 5.5e-09 65.9 70 52.9
Sed0020255 Sechium edule HOM05D004973 ORTHO05D006119 5.5e-09 65.9 245 29.4
arahy.Tifrunner.gnm1.ann1.4HMS3J Arachis hypogaea HOM05D004973 ORTHO05D006119 7.1e-09 65.5 70 52.9
PGSC0003DMG400002023 Solanum tuberosum HOM05D004973 ORTHO05D006119 7.1e-09 65.5 59 59.3
PGSC0003DMG400018718 Solanum tuberosum HOM05D004973 ORTHO05D006119 7.1e-09 65.5 59 59.3
Ah.15g091990 Amaranthus hybridus HOM05D004973 ORTHO05D006119 7.9e-08 62.0 254 28.7
CARHR132290 Cardamine hirsuta HOM05D004973 ORTHO05D006119 1.0e-07 61.6 172 37.2
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 2.3e-07 60.5 73 50.7
HPP92_014323 Vanilla planifolia HOM05D053846 ORTHO05D051553 6.7e-07 58.9 232 31.5
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 8.7e-07 58.5 95 45.3
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 1.1e-06 58.2 91 50.5
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 5.6e-06 55.8 93 40.9
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 7.4e-06 55.5 111 42.3


User provided reference genes

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