Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008166 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.0e-30 136.0 63 100.0
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.1e-27 125.9 78 80.8
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.0e-22 109.4 78 71.8
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.0e-22 109.4 78 70.5
Rhsim06G0114400 Rhododendron simsii HOM05D007628 ORTHO05D007342 5.1e-14 80.5 77 50.6
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 8.7e-14 79.7 73 54.8
CSS0046525 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.3e-12 75.9 47 66.0
Manes.18G104000 Manihot esculenta HOM05D007628 ORTHO05D007342 2.2e-12 75.1 62 53.2
Rhsim06G0114500 Rhododendron simsii HOM05D007628 ORTHO05D007342 2.8e-12 74.7 77 48.1
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 3.7e-12 74.3 52 59.6
Manes.18G103800 Manihot esculenta HOM05D007628 ORTHO05D007342 3.1e-11 71.2 46 63.0
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 4.1e-11 70.9 77 46.8
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 1.2e-10 69.3 46 60.9
GSVIVG01023245001 Vitis vinifera HOM05D007628 ORTHO05D007342 1.2e-10 69.3 46 60.9
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 2.6e-10 68.2 43 62.8
Rhsim11G0055100 Rhododendron simsii HOM05D007628 ORTHO05D007342 2.6e-10 68.2 74 52.7
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 3.4e-10 67.8 47 59.6
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 3.4e-10 67.8 46 56.5
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 5.9e-10 67.0 50 54.0
DCAR_001460 Daucus carota HOM05D001035 ORTHO05D001045 5.9e-10 67.0 46 58.7
CARHR064880 Cardamine hirsuta HOM05D007628 ORTHO05D007342 1.3e-09 65.9 50 54.0
Duzib177G0741 Durio zibethinus HOM05D007628 ORTHO05D007342 1.7e-09 65.5 71 43.7
Potri.019G080600 Populus trichocarpa HOM05D007628 ORTHO05D007342 1.7e-09 65.5 47 53.2
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 1.7e-09 65.5 44 61.4
Zm00001eb127310 Zea mays HOM05D007628 ORTHO05D007342 1.7e-09 65.5 46 54.3
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 2.2e-09 65.1 78 47.4
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 2.2e-09 65.1 78 47.4
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 2.2e-09 65.1 43 65.1
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 2.9e-09 64.7 73 47.9
BcaB05g24703 Brassica carinata HOM05D007628 ORTHO05D007342 5.0e-09 63.9 56 50.0
Ah.06g183420 Amaranthus hybridus HOM05D007628 ORTHO05D007342 8.5e-09 63.2 47 53.2
arahy.Tifrunner.gnm1.ann1.I9AMSX Arachis hypogaea HOM05D007628 ORTHO05D007342 1.1e-08 62.8 47 55.3
CiPaw.08G002000 Carya illinoinensis HOM05D007628 ORTHO05D007342 1.1e-08 62.8 53 50.9
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 1.1e-08 62.8 47 59.6
Sc16g0006710 Simmondsia chinensis HOM05D007628 ORTHO05D007342 1.1e-08 62.8 46 52.2
Aa31LG4G8570 Aethionema arabicum HOM05D007628 ORTHO05D007342 1.4e-08 62.4 56 48.2
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 1.4e-08 62.4 45 64.4
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.4e-08 62.4 45 64.4
BcaC03g15330 Brassica carinata HOM05D007628 ORTHO05D007342 1.9e-08 62.0 56 48.2
C02p29350 Brassica napus HOM05D007628 ORTHO05D007342 1.9e-08 62.0 56 48.2
BolC2t08986H Brassica oleracea HOM05D007628 ORTHO05D007342 1.9e-08 62.0 56 48.2
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.9e-08 62.0 46 60.9
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 1.9e-08 62.0 47 51.1
BraA02t06812Z Brassica rapa HOM05D007628 ORTHO05D007342 2.5e-08 61.6 56 48.2
Carub.0002s1884 Capsella rubella HOM05D007628 ORTHO05D007342 2.5e-08 61.6 46 54.3
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 2.5e-08 61.6 70 41.4
THA.LOC104800123 Tarenaya hassleriana HOM05D007628 ORTHO05D007342 2.5e-08 61.6 46 52.2
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 3.2e-08 61.2 44 59.1
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 3.2e-08 61.2 45 66.7
AT1G72060 Arabidopsis thaliana HOM05D007628 ORTHO05D007342 5.5e-08 60.5 56 46.4
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 5.5e-08 60.5 45 55.6
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 5.5e-08 60.5 74 40.5
QL02p025976 Quercus lobata HOM05D007628 ORTHO05D007342 5.5e-08 60.5 47 55.3
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 5.5e-08 60.5 74 40.5
QL93p0163_0044 Quercus lobata HOM05D007628 ORTHO05D007342 5.5e-08 60.5 47 55.3
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 7.2e-08 60.1 48 58.3
FvH4_5g32170 Fragaria vesca HOM05D007628 ORTHO05D007342 1.2e-07 59.3 44 61.4
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 1.2e-07 59.3 65 46.2
Hund27101 Selenicereus undatus HOM05D007628 ORTHO05D007342 1.2e-07 59.3 38 57.9
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 1.6e-07 58.9 44 54.5
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 1.6e-07 58.9 67 47.8
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 2.7e-07 58.2 45 64.4
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 2.7e-07 58.2 45 55.6
SHI05836 Sapria himalayana HOM05D007628 ORTHO05D007342 2.7e-07 58.2 49 51.0
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 3.6e-07 57.8 44 56.8
Ah.09g230940 Amaranthus hybridus HOM05D007628 ORTHO05D007342 4.6e-07 57.4 44 56.8
Cc10_g10180 Coffea canephora HOM05D013878 ORTHO05D007342 4.6e-07 57.4 75 36.0
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 4.6e-07 57.4 44 59.1
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 4.6e-07 57.4 44 59.1
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 4.6e-07 57.4 47 48.9
Cc10_g10200 Coffea canephora HOM05D007628 ORTHO05D007342 6.1e-07 57.0 77 37.7
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 6.1e-07 57.0 71 45.1
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 7.9e-07 56.6 49 57.1
CAN.G508.19 Capsicum annuum HOM05D008200 ORTHO05D007342 1.0e-06 56.2 75 41.3
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 1.4e-06 55.8 71 45.1
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.4e-06 55.8 75 42.7
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 1.4e-06 55.8 73 37.0
TPR.G34134 Trifolium pratense HOM05D007628 ORTHO05D007342 1.8e-06 55.5 44 52.3
Haze_21294 Corylus avellana HOM05D007628 ORTHO05D007342 3.0e-06 54.7 74 40.5
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 3.0e-06 54.7 75 45.3
AUR62004619 Chenopodium quinoa HOM05D007628 ORTHO05D007342 3.9e-06 54.3 48 47.9
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 3.9e-06 54.3 71 45.1
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 6.7e-06 53.5 45 51.1
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 8.8e-06 53.1 48 47.9


User provided reference genes

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