Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008162 Camellia sinensis var. sinensis HOM05D004570 ORTHO05D005494 5.8e-23 110.2 60 100.0
Gohir.A04G059000 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.1e-18 95.9 53 96.2
Gohir.A11G230402 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.1e-18 95.9 53 96.2
Gohir.A12G229466 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.1e-18 95.9 53 96.2
Gohir.D01G101982 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.1e-18 95.9 53 96.2
Gorai.010G129700 Gossypium raimondii HOM05D004570 ORTHO05D005494 1.1e-18 95.9 53 96.2
Nn021s41531 Nelumbo nucifera HOM05D004570 ORTHO05D005494 1.1e-18 95.9 53 96.2
Nn3g19985 Nelumbo nucifera HOM05D004570 ORTHO05D005494 1.1e-18 95.9 53 96.2
PSO548G0082 Papaver somniferum HOM05D004570 ORTHO05D005494 1.1e-18 95.9 53 96.2
TAR628G1502 Trochodendron aralioides HOM05D004570 ORTHO05D005494 1.1e-18 95.9 53 96.2
Lalb_Chr07g0192071 Lupinus albus HOM05D004570 ORTHO05D005494 1.5e-18 95.5 53 96.2
Lalb_Chr18g0049721 Lupinus albus HOM05D004570 ORTHO05D005494 1.5e-18 95.5 53 96.2
Gohir.D12G107900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 3.3e-18 94.4 53 94.3
RcHm_v2.0_Chr6g0260411 Rosa chinensis HOM05D004570 ORTHO05D005494 4.3e-18 94.0 53 94.3
RcHm_v2.0_CPg0502011 Rosa chinensis HOM05D004570 ORTHO05D005494 4.3e-18 94.0 53 94.3
MELO3C001309.2 Cucumis melo HOM05D004570 ORTHO05D005494 5.6e-18 93.6 53 94.3
MELO3C028029.2 Cucumis melo HOM05D004570 ORTHO05D005494 5.6e-18 93.6 53 94.3
MELO3C028120.2 Cucumis melo HOM05D004570 ORTHO05D005494 5.6e-18 93.6 53 94.3
DCAR_032506 Daucus carota HOM05D004570 ORTHO05D005494 5.6e-18 93.6 53 94.3
HanXRQChr00c0314g0573531 Helianthus annuus HOM05D004570 ORTHO05D005494 5.6e-18 93.6 53 94.3
HanXRQChr01g0004801 Helianthus annuus HOM05D004570 ORTHO05D005494 5.6e-18 93.6 53 94.3
HanXRQChr01g0020301 Helianthus annuus HOM05D004570 ORTHO05D005494 5.6e-18 93.6 53 94.3
HanXRQChr02g0041611 Helianthus annuus HOM05D004570 ORTHO05D005494 5.6e-18 93.6 53 94.3
HanXRQChr02g0044851 Helianthus annuus HOM05D004570 ORTHO05D005494 5.6e-18 93.6 53 94.3
HanXRQChr02g0052581 Helianthus annuus HOM05D004570 ORTHO05D005494 5.6e-18 93.6 53 94.3
HanXRQChr10g0283601 Helianthus annuus HOM05D004570 ORTHO05D005494 5.6e-18 93.6 53 94.3
HanXRQChr10g0284291 Helianthus annuus HOM05D004570 ORTHO05D005494 5.6e-18 93.6 53 94.3
HanXRQChr10g0289311 Helianthus annuus HOM05D004570 ORTHO05D005494 5.6e-18 93.6 53 94.3
HanXRQChr10g0318151 Helianthus annuus HOM05D004570 ORTHO05D005494 5.6e-18 93.6 53 94.3
HanXRQChr11g0326881 Helianthus annuus HOM05D004570 ORTHO05D005494 5.6e-18 93.6 53 94.3
HanXRQCPg0580091 Helianthus annuus HOM05D004570 ORTHO05D005494 5.6e-18 93.6 53 94.3
PGR111G0035 Punica granatum HOM05D004570 ORTHO05D005494 5.6e-18 93.6 53 94.3
Sed0017454 Sechium edule HOM05D004570 ORTHO05D005494 5.6e-18 93.6 53 94.3
HanXRQChr04g0095121 Helianthus annuus HOM05D004570 ORTHO05D005494 7.3e-18 93.2 53 92.5
CAN.G1148.10 Capsicum annuum HOM05D004570 ORTHO05D005494 9.5e-18 92.8 53 92.5
CAN.G1314.4 Capsicum annuum HOM05D004570 ORTHO05D005494 9.5e-18 92.8 53 92.5
CAN.G2018.14 Capsicum annuum HOM05D004570 ORTHO05D005494 9.5e-18 92.8 53 92.5
CAN.G2018.6 Capsicum annuum HOM05D004570 ORTHO05D005494 9.5e-18 92.8 53 92.5
CAN.G3365.4 Capsicum annuum HOM05D004570 ORTHO05D005494 9.5e-18 92.8 53 92.5
CAN.G438.84 Capsicum annuum HOM05D004570 ORTHO05D005494 9.5e-18 92.8 53 92.5
Ciclev10003202m.g Citrus clementina HOM05D004570 ORTHO05D005494 9.5e-18 92.8 53 90.6
Solyc00g500022.1 Solanum lycopersicum HOM05D004570 ORTHO05D005494 9.5e-18 92.8 53 92.5
Sopen07g012410 Solanum pennellii HOM05D004570 ORTHO05D005494 9.5e-18 92.8 53 92.5
PGSC0003DMG400044817 Solanum tuberosum HOM05D004570 ORTHO05D005494 9.5e-18 92.8 53 92.5
PGSC0003DMG400045454 Solanum tuberosum HOM05D004570 ORTHO05D005494 9.5e-18 92.8 53 92.5
PGSC0003DMG401022617 Solanum tuberosum HOM05D004570 ORTHO05D005494 9.5e-18 92.8 53 92.5
HanXRQChr04g0094281 Helianthus annuus HOM05D004570 ORTHO05D005494 1.6e-17 92.0 53 92.5
Glyma.15G238900 Glycine max HOM05D004570 ORTHO05D005494 2.1e-17 91.7 53 92.5
ATCG00650 Arabidopsis thaliana HOM05D004570 ORTHO05D005494 2.8e-17 91.3 53 90.6
BNapus_Darmor_BZH_scaffold_287p00190 Brassica napus HOM05D004570 ORTHO05D005494 2.8e-17 91.3 53 90.6
C02p43580 Brassica napus HOM05D004570 ORTHO05D005494 2.8e-17 91.3 53 90.6
C06p22960 Brassica napus HOM05D004570 ORTHO05D005494 2.8e-17 91.3 53 90.6
BolSC29t60476H Brassica oleracea HOM05D004570 ORTHO05D005494 2.8e-17 91.3 53 90.6
BolSC29t60597H Brassica oleracea HOM05D004570 ORTHO05D005494 2.8e-17 91.3 53 90.6
BolSC35t60657H Brassica oleracea HOM05D004570 ORTHO05D005494 2.8e-17 91.3 53 90.6
BolSC46t61008H Brassica oleracea HOM05D004570 ORTHO05D005494 2.8e-17 91.3 53 90.6
BolSC47t61087H Brassica oleracea HOM05D004570 ORTHO05D005494 2.8e-17 91.3 53 90.6
BolSC49t61173H Brassica oleracea HOM05D004570 ORTHO05D005494 2.8e-17 91.3 53 90.6
BraA06t25415Z Brassica rapa HOM05D004570 ORTHO05D005494 2.8e-17 91.3 53 90.6
BraSC138t45566Z Brassica rapa HOM05D004570 ORTHO05D005494 2.8e-17 91.3 53 90.6
BraSC25t45856Z Brassica rapa HOM05D004570 ORTHO05D005494 2.8e-17 91.3 53 90.6
BraSC58t46431Z Brassica rapa HOM05D004570 ORTHO05D005494 2.8e-17 91.3 53 90.6
CARHR282160 Cardamine hirsuta HOM05D004570 ORTHO05D005494 2.8e-17 91.3 53 90.6
Glyma.12G232200 Glycine max HOM05D004570 ORTHO05D005494 2.8e-17 91.3 53 92.5
Phvul.002G090511 Phaseolus vulgaris HOM05D004570 ORTHO05D005494 2.8e-17 91.3 53 90.6
AL2G21620 Arabidopsis lyrata HOM05D004570 ORTHO05D005494 4.7e-17 90.5 53 90.6
Lj1g0020553 Lotus japonicus HOM05D004570 ORTHO05D005494 4.7e-17 90.5 54 92.6
LjContig00318g0015790 Lotus japonicus HOM05D004570 ORTHO05D005494 4.7e-17 90.5 54 92.6
arahy.Tifrunner.gnm1.ann1.0J98KG Arachis hypogaea HOM05D004570 ORTHO05D005494 6.2e-17 90.1 51 94.1
arahy.Tifrunner.gnm1.ann1.JZHZ2W Arachis hypogaea HOM05D004570 ORTHO05D005494 6.2e-17 90.1 51 94.1
C02p28720 Brassica napus HOM05D004570 ORTHO05D005494 8.1e-17 89.7 53 88.7
C06p23030 Brassica napus HOM05D004570 ORTHO05D005494 8.1e-17 89.7 53 88.7
BolC2t08922H Brassica oleracea HOM05D004570 ORTHO05D005494 8.1e-17 89.7 53 88.7
CAN.G561.9 Capsicum annuum HOM05D004570 ORTHO05D005494 1.4e-16 89.0 53 86.8
Lalb_Chr23g0274801 Lupinus albus HOM05D004570 ORTHO05D005494 1.8e-16 88.6 53 90.6
Eucgr.E01044 Eucalyptus grandis HOM05D004570 ORTHO05D005494 3.1e-16 87.8 53 90.6
Gorai.001G063400 Gossypium raimondii HOM05D004570 ORTHO05D005494 4.0e-16 87.4 53 88.7
Gorai.001G196600 Gossypium raimondii HOM05D004570 ORTHO05D005494 6.8e-16 86.7 53 88.7
Gohir.A01G178208 Gossypium hirsutum HOM05D004570 ORTHO05D005494 8.9e-16 86.3 53 86.8
GSVIVG01023557001 Vitis vinifera HOM05D000092 ORTHO05D000042 1.2e-15 85.9 48 95.8
Gohir.D06G113675 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.0e-15 85.1 50 92.0
BolC6t36198H Brassica oleracea HOM05D004570 ORTHO05D005494 5.8e-15 83.6 53 84.9
Lj2P1237T61 Lonicera japonica HOM05D004570 ORTHO05D005494 5.8e-15 83.6 53 83.0
Lj2P1239T137 Lonicera japonica HOM05D004570 ORTHO05D005494 5.8e-15 83.6 53 83.0
Hund04053 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund07983 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund08573 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund08807 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund20237 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund22775 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund27463 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund27482 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund27573 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund27596 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund27877 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund27896 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund27980 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund28050 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund28104 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund28263 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund28454 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund28470 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund28489 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund28514 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund28525 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund28627 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund28673 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund28719 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund28741 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund28753 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund28842 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund28891 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund29139 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund29177 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund29360 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund29465 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund29622 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund29704 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund29708 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund29718 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund29725 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund29808 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund29832 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund29833 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund29856 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund29864 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund29940 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund30026 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund30252 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund30318 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund30479 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund30523 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Hund30577 Selenicereus undatus HOM05D004570 ORTHO05D005494 5.8e-15 83.6 52 84.6
Zm00001eb435160 Zea mays HOM05D004570 ORTHO05D005494 5.8e-15 83.6 61 75.4
Zm00001eb437170 Zea mays HOM05D004570 ORTHO05D005494 5.8e-15 83.6 61 75.4
Gohir.A09G109900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.3e-14 82.4 53 84.9
Os01g0523401 Oryza sativa ssp. japonica HOM05D004570 ORTHO05D005494 2.2e-14 81.6 61 73.8
Gohir.A01G178244 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.9e-14 81.3 53 83.0
Lalb_Chr23g0274341 Lupinus albus HOM05D004570 ORTHO05D005494 2.9e-14 81.3 54 87.0
CAN.G1753.2 Capsicum annuum HOM05D004570 ORTHO05D005494 3.7e-14 80.9 53 79.2
Gorai.006G063400 Gossypium raimondii HOM05D004570 ORTHO05D005494 1.1e-13 79.3 45 95.6
Hund15803 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.4e-13 79.0 52 80.8
Gohir.A04G042801 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.4e-13 78.2 47 89.4
Solyc01g017085.1 Solanum lycopersicum HOM05D004570 ORTHO05D005494 2.4e-13 78.2 53 75.5
Medtr4g051350 Medicago truncatula HOM05D004570 ORTHO05D009532 3.0e-11 71.2 61 67.2
arahy.Tifrunner.gnm1.ann1.RCVY9V Arachis hypogaea HOM05D000540 ORTHO05D000681 1.1e-10 69.3 42 88.1
BraSC103t45456Z Brassica rapa HOM05D004570 ORTHO05D005494 1.7e-06 55.5 37 86.5


User provided reference genes

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