Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 1.2e-75 286.6 161 100.0
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 1.6e-59 233.0 157 88.5
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 2.5e-57 225.7 157 77.1
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 5.6e-49 198.0 157 70.1
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 2.8e-48 195.7 157 68.2
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 8.1e-48 194.1 150 72.0
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 3.1e-47 192.2 156 67.3
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 4.0e-47 191.8 155 68.4
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 1.5e-46 189.9 154 72.7
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 4.5e-46 188.3 156 66.0
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 9.9e-46 187.2 155 67.7
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 1.9e-44 183.0 155 66.5
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 9.3e-44 180.6 158 64.6
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 9.3e-44 180.6 156 66.7
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 1.2e-43 180.3 156 64.7
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 1.6e-43 179.9 154 68.8
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 1.3e-42 176.8 158 63.9
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 6.7e-42 174.5 158 62.7
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 7.4e-41 171.0 155 58.7
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 7.4e-41 171.0 164 58.5
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 2.8e-40 169.1 162 57.4
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 2.8e-40 169.1 162 57.4
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 4.8e-40 168.3 159 60.4
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 4.0e-39 165.2 160 61.9
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 6.9e-39 164.5 156 58.3
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 2.6e-38 162.5 155 58.1
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 4.5e-38 161.8 154 52.6
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 7.6e-38 161.0 158 59.5
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 7.6e-38 161.0 159 58.5
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 1.0e-37 160.6 154 59.7
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 1.0e-37 160.6 156 60.9
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 2.5e-36 156.0 155 56.8
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.5e-36 156.0 152 61.2
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 2.5e-36 156.0 167 54.5
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 9.3e-36 154.1 151 59.6
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 2.1e-35 152.9 152 60.5
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.1e-35 152.9 152 60.5
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 2.1e-35 152.9 160 58.8
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 1.8e-34 149.8 149 55.7
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 2.3e-34 149.4 159 55.3
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 3.9e-34 148.7 154 58.4
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 6.7e-34 147.9 149 55.0
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 6.7e-34 147.9 152 57.2
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 4.3e-33 145.2 157 57.3
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 7.4e-33 144.4 154 53.9
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 1.3e-32 143.7 147 57.1
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 1.6e-32 143.3 158 52.5
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 1.6e-32 143.3 158 53.8
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 2.8e-32 142.5 154 56.5
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 3.7e-32 142.1 157 57.3
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 4.8e-32 141.7 158 54.4
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 1.4e-31 140.2 154 55.2
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 4.1e-31 138.7 158 53.8
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 4.1e-31 138.7 159 52.2
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 5.3e-31 138.3 153 49.0
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 5.3e-31 138.3 153 49.0
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 9.0e-31 137.5 151 50.3
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 4.5e-30 135.2 148 52.0
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 4.5e-30 135.2 148 52.0
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 5.9e-30 134.8 156 53.2
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.7e-29 133.3 161 51.6
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.2e-29 132.9 157 52.2
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 2.2e-29 132.9 156 51.3
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 8.5e-29 131.0 150 52.0
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 8.5e-29 131.0 154 51.3
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 2.5e-28 129.4 152 50.7
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 4.2e-28 128.6 155 49.7
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 2.7e-27 125.9 150 50.0
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 4.6e-27 125.2 149 49.0
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 1.0e-26 124.0 156 46.2
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 6.7e-26 121.3 179 44.7
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 6.7e-26 121.3 152 49.3
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 1.5e-25 120.2 149 48.3
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 1.5e-25 120.2 152 49.3
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 1.9e-25 119.8 158 53.2
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 2.5e-25 119.4 156 48.1
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 3.3e-25 119.0 153 48.4
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 3.3e-25 119.0 154 46.8
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 3.3e-25 119.0 131 49.6
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 4.3e-25 118.6 150 44.7
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 5.7e-25 118.2 139 46.8
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 7.4e-25 117.9 159 47.2
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 2.8e-24 115.9 183 42.6
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 5.3e-23 111.7 159 45.3
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 2.6e-22 109.4 155 43.2
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 5.9e-22 108.2 178 38.2
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.0e-21 107.5 123 44.7
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.3e-21 107.1 132 50.8
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 1.3e-21 107.1 123 48.8
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 5.0e-21 105.1 153 45.1
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 2.5e-20 102.8 126 45.2
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.2e-20 102.1 160 43.1
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 7.2e-20 101.3 126 45.2
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 7.2e-20 101.3 155 41.9
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 1.2e-19 100.5 153 42.5
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 3.0e-18 95.9 126 43.7
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 6.7e-18 94.7 145 44.1
CiPaw.02G059100 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.5e-17 93.6 106 52.8
QL06p009834 Quercus lobata HOM05D003565 ORTHO05D003943 2.0e-17 93.2 155 41.3
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 1.3e-16 90.5 148 40.5
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 1.3e-16 90.5 178 39.3
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.3e-16 90.5 154 42.2
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 1.3e-16 90.5 146 43.8
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 2.2e-16 89.7 152 42.1
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 3.7e-16 89.0 148 39.9
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 3.7e-16 89.0 149 42.3
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.7e-16 89.0 153 41.2
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 3.7e-16 89.0 153 41.2
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 4.8e-16 88.6 154 39.6
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 8.2e-16 87.8 161 46.6
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 1.1e-15 87.4 156 39.1
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.4e-15 87.0 153 41.2
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.4e-15 87.0 155 40.6
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 2.4e-15 86.3 149 40.3
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 4.1e-15 85.5 147 44.2
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 5.3e-15 85.1 147 44.2
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.9e-15 84.7 161 46.0
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 9.1e-15 84.3 155 41.9
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 1.2e-14 84.0 155 41.9
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 1.2e-14 84.0 155 41.9
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 2.0e-14 83.2 106 46.2
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 2.6e-14 82.8 139 43.9
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 4.5e-14 82.0 158 38.0
A01p37640 Brassica napus HOM05D003565 ORTHO05D003943 4.5e-14 82.0 120 47.5
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 4.5e-14 82.0 120 47.5
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 4.5e-14 82.0 155 41.3
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 4.5e-14 82.0 120 46.7
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 5.9e-14 81.6 167 39.5
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 7.7e-14 81.3 155 40.0
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 1.3e-13 80.5 105 44.8
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 1.7e-13 80.1 160 34.4
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.2e-13 79.7 149 41.6
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.2e-13 79.7 151 40.4
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 2.2e-13 79.7 155 40.0
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 2.2e-13 79.7 155 40.0
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 2.9e-13 79.3 159 36.5
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 5.0e-13 78.6 160 33.8
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 6.5e-13 78.2 176 37.5
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 8.5e-13 77.8 155 39.4
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 1.1e-12 77.4 155 39.4
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 1.1e-12 77.4 155 38.7
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 1.9e-12 76.6 96 47.9
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 1.9e-12 76.6 155 40.0
CsaV3_3G014760 Cucumis sativus L. HOM05D003565 ORTHO05D003943 7.2e-12 74.7 105 41.9
QL06p009884 Quercus lobata HOM05D003565 ORTHO05D003943 7.2e-12 74.7 145 37.2
CsaV3_3G014770 Cucumis sativus L. HOM05D003565 ORTHO05D003943 3.6e-11 72.4 160 35.0
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 6.1e-11 71.6 157 35.0
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 1.8e-10 70.1 145 33.8
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 6.7e-10 68.2 141 34.8
BraA01t03783Z Brassica rapa HOM05D003565 ORTHO05D003943 4.4e-09 65.5 173 30.1
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 7.4e-09 64.7 149 32.9
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 1.7e-08 63.5 147 31.3
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 1.7e-08 63.5 148 33.1
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 2.8e-08 62.8 173 29.5
BcaC09g48665 Brassica carinata HOM05D003565 ORTHO05D003943 3.7e-08 62.4 173 30.1
C01p47150 Brassica napus HOM05D003565 ORTHO05D003943 3.7e-08 62.4 173 30.1
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 3.7e-08 62.4 152 35.5
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.8e-08 62.0 161 32.3
BolC1t04684H Brassica oleracea HOM05D003565 ORTHO05D003943 1.1e-07 60.8 173 30.1
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.1e-07 60.8 161 36.6
QL06p009948 Quercus lobata HOM05D003565 ORTHO05D003943 1.4e-07 60.5 145 33.8
FAN07G1512 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.4e-07 59.7 70 58.6
Hma1.2p1_0078F.1_g040470 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 5.3e-07 58.5 155 36.8
Nitab4.5_0000493g0080 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.0e-06 56.6 158 34.8


User provided reference genes

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