Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 4.6e-42 175.6 247 100.0
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 1.4e-30 137.5 248 90.7
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.1e-26 123.6 244 90.2
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 2.1e-26 123.6 258 77.5
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 1.8e-25 120.6 259 62.9
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 5.1e-25 119.0 281 70.8
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 1.6e-23 114.0 247 83.0
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 1.1e-22 111.3 254 79.1
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.5e-21 107.5 120 95.0
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 7.6e-21 105.1 120 93.3
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 7.6e-21 105.1 120 93.3
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 1.3e-20 104.4 120 90.0
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 1.3e-20 104.4 120 94.2
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.2e-20 103.6 120 94.2
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 2.2e-20 103.6 120 93.3
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 2.9e-20 103.2 120 92.5
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 3.8e-20 102.8 118 94.1
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 3.8e-20 102.8 239 79.9
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 3.8e-20 102.8 118 94.9
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 4.9e-20 102.4 120 91.7
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 4.9e-20 102.4 118 94.1
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 6.5e-20 102.1 118 93.2
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 6.5e-20 102.1 120 91.7
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 1.1e-19 101.3 258 76.0
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 1.1e-19 101.3 120 91.7
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 1.4e-19 100.9 118 93.2
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.4e-19 100.9 118 94.1
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 1.4e-19 100.9 120 92.5
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.9e-19 100.5 118 93.2
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 2.5e-19 100.1 120 90.8
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 3.2e-19 99.8 118 92.4
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 3.2e-19 99.8 118 92.4
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 3.2e-19 99.8 120 90.8
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 3.2e-19 99.8 118 90.7
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 4.2e-19 99.4 120 90.0
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 4.2e-19 99.4 118 93.2
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 4.2e-19 99.4 120 80.8
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 5.5e-19 99.0 118 90.7
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 7.1e-19 98.6 120 91.7
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 7.1e-19 98.6 118 92.4
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 7.1e-19 98.6 118 91.5
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 1.2e-18 97.8 118 92.4
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 1.2e-18 97.8 118 89.8
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 1.2e-18 97.8 120 90.8
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 1.6e-18 97.4 118 91.5
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 1.6e-18 97.4 118 91.5
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 1.6e-18 97.4 118 91.5
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 1.6e-18 97.4 118 89.8
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 2.1e-18 97.1 118 92.4
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 2.1e-18 97.1 118 92.4
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 2.1e-18 97.1 118 89.8
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 2.7e-18 96.7 118 90.7
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 2.7e-18 96.7 118 91.5
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 2.7e-18 96.7 118 89.0
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 2.7e-18 96.7 120 88.3
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 2.7e-18 96.7 120 90.0
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 2.7e-18 96.7 118 89.8
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 3.5e-18 96.3 118 89.8
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 4.6e-18 95.9 129 68.2
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.6e-18 95.9 118 90.7
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 4.6e-18 95.9 118 91.5
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 4.6e-18 95.9 118 91.5
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 4.6e-18 95.9 118 91.5
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 6.0e-18 95.5 120 90.0
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 6.0e-18 95.5 118 90.7
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 6.0e-18 95.5 118 90.7
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 6.0e-18 95.5 118 89.8
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 6.0e-18 95.5 118 90.7
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 7.9e-18 95.1 120 88.3
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 1.0e-17 94.7 117 91.5
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.0e-17 94.7 118 89.8
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.0e-17 94.7 118 92.4
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.0e-17 94.7 118 90.7
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.0e-17 94.7 118 90.7
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 1.3e-17 94.4 118 91.5
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.3e-17 94.4 118 92.4
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 1.8e-17 94.0 118 89.8
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 1.8e-17 94.0 118 89.8
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 1.8e-17 94.0 118 89.8
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.8e-17 94.0 118 89.8
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 3.0e-17 93.2 118 90.7
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.9e-17 92.8 118 89.8
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 3.9e-17 92.8 118 90.7
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 5.1e-17 92.4 118 89.0
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 5.1e-17 92.4 118 91.5
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 6.7e-17 92.0 120 86.7
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 8.7e-17 91.7 117 88.9
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.5e-16 90.9 118 87.3
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 1.5e-16 90.9 120 85.8
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.9e-16 90.5 118 66.9
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 1.9e-16 90.5 118 87.3
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 2.5e-16 90.1 118 89.8
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 3.3e-16 89.7 118 86.4
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 3.3e-16 89.7 118 86.4
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 3.3e-16 89.7 118 88.1
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 4.3e-16 89.4 120 86.7
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 5.7e-16 89.0 120 55.0
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 7.4e-16 88.6 118 86.4
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 1.3e-15 87.8 120 87.5
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 1.3e-15 87.8 118 87.3
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.6e-15 87.4 120 85.0
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 8.2e-15 85.1 118 84.7
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 1.8e-14 84.0 243 75.3
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 3.1e-14 83.2 117 86.3
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 3.1e-14 83.2 117 86.3
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 3.1e-14 83.2 117 87.2
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 3.1e-14 83.2 117 87.2
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 3.1e-14 83.2 117 87.2
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 3.1e-14 83.2 117 87.2
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 3.1e-14 83.2 117 86.3
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 3.1e-14 83.2 117 86.3
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 3.1e-14 83.2 117 86.3
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 3.1e-14 83.2 117 86.3
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 4.1e-14 82.8 41 95.1
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 5.3e-14 82.4 118 84.7
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 9.0e-14 81.6 41 92.7
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 1.2e-13 81.3 118 85.6
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 1.2e-13 81.3 239 50.6
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.2e-13 81.3 41 90.2
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 1.5e-13 80.9 118 85.6
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 2.0e-13 80.5 118 85.6
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 2.6e-13 80.1 121 84.3
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 4.5e-13 79.3 162 72.8
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 1.0e-12 78.2 245 80.8
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.3e-12 77.8 120 84.2
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 2.2e-12 77.0 118 81.4
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 3.8e-12 76.3 41 82.9
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 5.0e-12 75.9 118 82.2
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.1e-11 74.7 118 82.2
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 1.9e-11 73.9 41 87.8
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 2.5e-11 73.6 38 89.5
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.2e-11 72.8 118 78.0
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.2e-11 72.8 118 78.8
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 4.2e-11 72.8 118 78.8
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 5.5e-11 72.4 38 89.5
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 1.2e-10 71.2 40 82.5
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 1.2e-10 71.2 41 75.6
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 1.6e-10 70.9 41 87.8
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 2.1e-10 70.5 41 73.2
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 2.7e-10 70.1 120 80.8
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 7.9e-10 68.6 125 76.8
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 1.0e-09 68.2 120 80.0
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 1.0e-09 68.2 167 81.4
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 1.3e-09 67.8 41 85.4
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 3.0e-09 66.6 41 70.7
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 8.7e-09 65.1 118 82.2
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 8.7e-09 65.1 38 78.9
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 1.1e-08 64.7 35 82.9
SEGI_01859 Sequoiadendron giganteum HOM05D003751 ORTHO05D017703 1.5e-08 64.3 38 76.3
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.9e-08 63.9 32 90.6
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.5e-08 63.5 118 63.6
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.5e-08 63.5 118 63.6
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 3.3e-08 63.2 41 65.9
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 4.3e-08 62.8 120 79.2
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 7.4e-08 62.0 35 80.0
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 7.4e-08 62.0 118 78.8
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 9.7e-08 61.6 120 79.2
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 9.7e-08 61.6 118 78.8
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 3.7e-07 59.7 120 80.8
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 6.3e-07 58.9 70 51.4
MELO3C030015.2 Cucumis melo HOM05D019030 ORTHO05D017703 1.1e-06 58.2 35 77.1
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 2.4e-06 57.0 44 63.6
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 6.9e-06 55.5 118 78.0


User provided reference genes

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