Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008152 Camellia sinensis var. sinensis HOM05D007718 ORTHO05D009752 1.2e-32 142.5 71 100.0
Actinidia04142 Actinidia chinensis HOM05D007718 ORTHO05D009752 3.4e-22 107.8 64 79.7
Dinv22108 Davidia involucrata HOM05D007718 ORTHO05D009752 2.2e-21 105.1 65 73.8
TWI18G0705 Tripterygium wilfordii HOM05D007718 ORTHO05D009752 8.3e-21 103.2 63 73.0
CANSAT21G0081 Cannabis sativa HOM05D007718 ORTHO05D009752 5.4e-20 100.5 58 75.9
CANSAT21G2143 Cannabis sativa HOM05D007718 ORTHO05D009752 5.4e-20 100.5 58 75.9
Manes.02G201400 Manihot esculenta HOM05D007718 ORTHO05D009752 7.0e-20 100.1 66 68.2
Manes.02G205384 Manihot esculenta HOM05D007718 ORTHO05D009752 7.0e-20 100.1 66 68.2
Manes.02G221600 Manihot esculenta HOM05D007718 ORTHO05D009752 7.0e-20 100.1 66 68.2
Phvul.008G126000 Phaseolus vulgaris HOM05D007718 ORTHO05D009752 9.2e-20 99.8 65 69.2
Lalb_Chr03g0041731 Lupinus albus HOM05D007718 ORTHO05D009752 1.6e-19 99.0 65 67.7
Manes.02G201100 Manihot esculenta HOM05D007718 ORTHO05D009752 3.5e-19 97.8 66 66.7
Peaxi162Scf00048g00419 Petunia axillaris HOM05D007718 ORTHO05D009752 3.5e-19 97.8 56 75.0
Ca_07513_v3 Cicer arietinum L. HOM05D007718 ORTHO05D009752 4.6e-19 97.4 65 66.2
Ciclev10022933m.g Citrus clementina HOM05D007718 ORTHO05D009752 4.6e-19 97.4 69 68.1
Potri.019G071800 Populus trichocarpa HOM05D007718 ORTHO05D009752 6.0e-19 97.1 66 68.2
Thecc.08G178100 Theobroma cacao HOM05D007718 ORTHO05D009752 7.8e-19 96.7 58 72.4
vmacro13123 Vaccinium macrocarpon HOM05D007718 ORTHO05D009752 7.8e-19 96.7 63 69.8
TPR.G23283 Trifolium pratense HOM05D007718 ORTHO05D009752 1.3e-18 95.9 65 64.6
Glyma.08G353800 Glycine max HOM05D007718 ORTHO05D009752 2.3e-18 95.1 65 64.6
RcHm_v2.0_Chr6g0251251 Rosa chinensis HOM05D007718 ORTHO05D009752 2.3e-18 95.1 65 70.8
PSO170G0967 Papaver somniferum HOM05D007718 ORTHO05D009752 3.0e-18 94.7 66 65.2
Rhsim01G0004700 Rhododendron simsii HOM05D007718 ORTHO05D009752 3.0e-18 94.7 63 66.7
FvH4_2g00852 Fragaria vesca HOM05D007718 ORTHO05D009752 5.1e-18 94.0 58 70.7
Aqoxy5G00833 Aquilegia oxysepala HOM05D007718 ORTHO05D009752 6.6e-18 93.6 65 64.6
COL.COLO4_05200 Corchorus olitorius HOM05D007718 ORTHO05D009752 6.6e-18 93.6 58 70.7
Prupe.8G007200 Prunus persica HOM05D007718 ORTHO05D009752 6.6e-18 93.6 66 65.2
FAN27G3322 Fragaria x ananassa HOM05D007718 ORTHO05D009752 8.6e-18 93.2 58 70.7
PSO017G4737 Papaver somniferum HOM05D007718 ORTHO05D009752 8.6e-18 93.2 69 62.3
GSVIVG01036292001 Vitis vinifera HOM05D007718 ORTHO05D009752 8.6e-18 93.2 57 71.9
Atru.chr13.2493 Acer truncatum HOM05D007718 ORTHO05D009752 1.1e-17 92.8 58 67.2
CDE04G1586 Ceratophyllum demersum HOM05D007718 ORTHO05D009752 1.1e-17 92.8 58 69.0
TAR383G0451 Trochodendron aralioides HOM05D007718 ORTHO05D009752 1.1e-17 92.8 65 66.2
Medtr7g057760 Medicago truncatula HOM05D007718 ORTHO05D009752 1.5e-17 92.4 66 65.2
Duzib177G0547 Durio zibethinus HOM05D007718 ORTHO05D009752 1.9e-17 92.0 53 75.5
Gohir.A08G230000 Gossypium hirsutum HOM05D007718 ORTHO05D009752 1.9e-17 92.0 50 78.0
Gohir.D08G250400 Gossypium hirsutum HOM05D007718 ORTHO05D009752 1.9e-17 92.0 50 78.0
Gorai.004G267100 Gossypium raimondii HOM05D007718 ORTHO05D009752 1.9e-17 92.0 50 78.0
Nn5g31449 Nelumbo nucifera HOM05D007718 ORTHO05D009752 1.9e-17 92.0 65 64.6
AT2G21195 Arabidopsis thaliana HOM05D007718 ORTHO05D009752 2.5e-17 91.7 56 71.4
arahy.Tifrunner.gnm1.ann1.KNF5LM Arachis hypogaea HOM05D007718 ORTHO05D009752 2.5e-17 91.7 65 61.5
Nn5g27289 Nelumbo nucifera HOM05D007718 ORTHO05D009752 2.5e-17 91.7 65 63.1
AL4G10300 Arabidopsis lyrata HOM05D007718 ORTHO05D009752 3.3e-17 91.3 56 69.6
Atru.chr13.2505 Acer truncatum HOM05D007718 ORTHO05D009752 4.3e-17 90.9 57 66.7
C04p50420 Brassica napus HOM05D007718 ORTHO05D009752 5.6e-17 90.5 56 67.9
BolC4t26639H Brassica oleracea HOM05D007718 ORTHO05D009752 5.6e-17 90.5 56 67.9
CARHR112060 Cardamine hirsuta HOM05D007718 ORTHO05D009752 9.5e-17 89.7 56 66.1
QL08p027549 Quercus lobata HOM05D007718 ORTHO05D009752 9.5e-17 89.7 50 76.0
Carub.0004s0023 Capsella rubella HOM05D007718 ORTHO05D009752 1.2e-16 89.4 56 67.9
arahy.Tifrunner.gnm1.ann1.NNV5AG Arachis hypogaea HOM05D007718 ORTHO05D009752 2.1e-16 88.6 65 60.0
Thhalv10000395m.g Eutrema salsugineum HOM05D007718 ORTHO05D009752 2.1e-16 88.6 56 67.9
Ah.05g170340 Amaranthus hybridus HOM05D007718 ORTHO05D009752 2.8e-16 88.2 65 60.0
BraA04t17231Z Brassica rapa HOM05D007718 ORTHO05D009752 2.8e-16 88.2 56 66.1
A04p15950 Brassica napus HOM05D007718 ORTHO05D009752 3.6e-16 87.8 56 64.3
EL10Ac1g01266 Beta vulgaris HOM05D007718 ORTHO05D009752 6.2e-16 87.0 49 71.4
MELO3C022171.2 Cucumis melo HOM05D007718 ORTHO05D009752 8.1e-16 86.7 49 73.5
THA.LOC104807782 Tarenaya hassleriana HOM05D007718 ORTHO05D009752 8.1e-16 86.7 55 65.5
ClCG08G001110 Citrullus lanatus HOM05D007718 ORTHO05D009752 1.1e-15 86.3 49 73.5
Migut.C01378 Erythranthe guttata HOM05D007718 ORTHO05D009752 1.1e-15 86.3 57 61.4
Lsat_1_v5_gn_3_36061 Lactuca sativa HOM05D007718 ORTHO05D009752 1.4e-15 85.9 61 62.3
FAN20G0290 Fragaria x ananassa HOM05D005243 ORTHO05D009752 1.8e-15 85.5 66 65.2
MD05G1004000 Malus domestica HOM05D007718 ORTHO05D009752 1.8e-15 85.5 56 66.1
SGA_v2.0_scaffold24G10646 Striga asiatica HOM05D007718 ORTHO05D009752 4.0e-15 84.3 48 72.9
MSTRG.1597 Avicennia marina HOM05D007718 ORTHO05D009752 5.2e-15 84.0 59 61.0
Sed0001698 Sechium edule HOM05D007718 ORTHO05D009752 5.2e-15 84.0 49 71.4
CiPaw.04G009400 Carya illinoinensis HOM05D007718 ORTHO05D009752 8.9e-15 83.2 47 72.3
HPP92_012514 Vanilla planifolia HOM05D007718 ORTHO05D009752 1.2e-14 82.8 65 58.5
unitig_26.g9859 Utricularia gibba HOM05D007718 ORTHO05D009752 1.5e-14 82.4 56 60.7
HanXRQChr09g0267041 Helianthus annuus HOM05D007718 ORTHO05D009752 2.6e-14 81.6 57 63.2
Os07g0265100 Oryza sativa ssp. japonica HOM05D007718 ORTHO05D009752 2.6e-14 81.6 48 64.6
ECA232G2296 Erigeron canadensis HOM05D005243 ORTHO05D006670 1.7e-13 79.0 52 63.5
ATR1089G029 Amborella trichopoda HOM05D007718 ORTHO05D009752 3.2e-12 74.7 65 50.8
SEGI_14522 Sequoiadendron giganteum HOM05D007718 ORTHO05D009752 3.2e-12 74.7 54 57.4
Zm00001eb304750 Zea mays HOM05D007718 ORTHO05D009752 5.4e-12 73.9 52 53.8
AagrBONN_evm.TU.Sc2ySwM_344.3280 Anthoceros agrestis HOM05D007718 ORTHO05D009752 3.0e-10 68.2 63 49.2
BcaC02g08810 Brassica carinata HOM05D007718 ORTHO05D009752 3.0e-10 68.2 38 73.7
Oeu020544.1 Olea europaea HOM05D007718 ORTHO05D009752 1.1e-09 66.2 39 71.8
AUR62038531 Chenopodium quinoa HOM05D007718 ORTHO05D009752 2.5e-09 65.1 35 74.3
Aa31LG7G15310 Aethionema arabicum HOM05D007718 ORTHO05D009752 3.3e-09 64.7 38 76.3
CSS0003383 Camellia sinensis var. sinensis HOM05D007718 ORTHO05D009752 4.3e-09 64.3 36 77.8
Mapoly0002s0003 Marchantia polymorpha HOM05D007718 ORTHO05D009752 5.6e-09 63.9 51 52.9
Aa31sc115G10 Aethionema arabicum HOM05D007718 ORTHO05D009752 7.3e-09 63.5 35 77.1
SalBow7G2847 Salvia bowleyana HOM05D007718 ORTHO05D009752 9.5e-09 63.2 46 60.9
VMungo1383G3332 Vigna mungo HOM05D000479 ORTHO05D001285 9.5e-09 63.2 44 63.6
Lj1g0018023 Lotus japonicus HOM05D007718 ORTHO05D009752 3.6e-08 61.2 35 71.4
Psat3g145480 Pisum sativum HOM05D007718 ORTHO05D009752 8.1e-08 60.1 35 65.7
Cc10_g08650 Coffea canephora HOM05D007718 ORTHO05D009752 1.5e-06 55.8 36 55.6


User provided reference genes

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