Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 1.1e-113 413.3 216 100.0
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 1.1e-113 413.3 216 100.0
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 3.8e-109 398.3 216 96.3
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 2.1e-107 392.5 216 93.5
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 2.1e-107 392.5 216 94.4
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 4.7e-107 391.3 216 93.1
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 1.8e-106 389.4 216 91.7
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 2.3e-106 389.0 215 92.1
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 3.0e-106 388.7 216 93.1
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 3.9e-106 388.3 216 94.0
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 3.9e-106 388.3 216 92.6
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 6.7e-106 387.5 216 91.7
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 6.7e-106 387.5 216 92.6
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 8.8e-106 387.1 216 93.5
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 1.5e-105 386.3 216 91.2
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 2.6e-105 385.6 216 91.2
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 2.6e-105 385.6 216 91.2
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 2.6e-105 385.6 216 91.7
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 2.6e-105 385.6 216 91.2
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 5.7e-105 384.4 216 91.2
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 5.7e-105 384.4 216 91.2
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 5.7e-105 384.4 215 92.6
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 7.4e-105 384.0 216 91.2
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 7.4e-105 384.0 216 92.1
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 7.4e-105 384.0 216 91.2
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 9.7e-105 383.6 216 91.2
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 1.3e-104 383.3 214 91.6
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 2.2e-104 382.5 216 91.2
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 2.2e-104 382.5 216 91.2
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 3.7e-104 381.7 216 93.1
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 3.7e-104 381.7 216 90.7
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 4.8e-104 381.3 216 90.7
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 4.8e-104 381.3 216 90.7
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 4.8e-104 381.3 216 90.7
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 4.8e-104 381.3 216 90.7
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 4.8e-104 381.3 216 90.7
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 6.3e-104 380.9 216 91.7
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 6.3e-104 380.9 216 90.3
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 8.2e-104 380.6 216 89.8
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 8.2e-104 380.6 216 90.3
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 1.1e-103 380.2 216 89.8
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 1.4e-103 379.8 216 90.7
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 1.4e-103 379.8 216 91.2
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 1.8e-103 379.4 216 90.7
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 1.8e-103 379.4 216 90.3
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 2.4e-103 379.0 216 90.3
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 2.4e-103 379.0 216 91.2
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 3.1e-103 378.6 216 90.3
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 3.1e-103 378.6 216 90.3
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 3.1e-103 378.6 216 89.8
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 4.1e-103 378.3 216 89.8
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 7.0e-103 377.5 216 90.7
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 7.0e-103 377.5 227 88.5
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 7.0e-103 377.5 216 91.2
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 9.1e-103 377.1 216 89.8
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.2e-102 376.7 216 89.8
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 1.2e-102 376.7 216 88.9
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 1.6e-102 376.3 216 88.9
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 2.0e-102 375.9 216 89.8
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 2.0e-102 375.9 216 87.5
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 3.5e-102 375.2 216 90.3
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 5.9e-102 374.4 216 89.4
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 5.9e-102 374.4 216 87.0
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 88.9
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 89.4
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 1.3e-101 373.2 216 88.4
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 2.2e-101 372.5 216 88.9
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 2.2e-101 372.5 220 89.1
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 2.9e-101 372.1 216 86.6
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 2.9e-101 372.1 216 86.6
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 2.9e-101 372.1 216 87.0
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 2.9e-101 372.1 216 87.0
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 86.6
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 3.8e-101 371.7 215 87.9
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 6.5e-101 370.9 216 86.1
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 6.5e-101 370.9 216 86.1
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 6.5e-101 370.9 216 86.6
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 6.5e-101 370.9 216 86.6
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 6.5e-101 370.9 216 86.6
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 6.5e-101 370.9 216 88.4
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 86.1
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 86.1
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 86.1
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 1.1e-100 370.2 216 88.0
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 1.9e-100 369.4 216 88.4
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 2.5e-100 369.0 216 87.5
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 3.2e-100 368.6 216 86.1
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 4.2e-100 368.2 216 85.2
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 4.2e-100 368.2 216 85.2
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 4.2e-100 368.2 216 85.2
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 1.2e-99 366.7 216 84.7
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 1.2e-99 366.7 216 84.7
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 2.1e-99 365.9 216 87.0
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 2.1e-99 365.9 221 86.0
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 2.7e-99 365.5 216 85.2
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 2.7e-99 365.5 216 87.0
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 4.7e-99 364.8 217 86.6
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 8.0e-99 364.0 216 86.6
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.0e-98 362.1 216 86.6
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 3.0e-98 362.1 215 86.0
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 4.0e-98 361.7 216 86.1
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 4.0e-98 361.7 199 95.0
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 5.2e-98 361.3 216 83.8
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 8.8e-98 360.5 216 86.1
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.5e-97 359.8 216 86.1
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 3.3e-97 358.6 216 89.4
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 3.3e-97 358.6 216 86.6
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 2.4e-95 352.4 221 82.8
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 3.5e-94 348.6 216 81.5
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 4.5e-94 348.2 216 80.1
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 1.0e-93 347.1 216 85.6
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 3.2e-92 342.0 221 81.4
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 1.2e-91 340.1 216 83.3
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 1.0e-90 337.0 216 82.4
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 1.0e-90 337.0 216 82.4
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 2.6e-89 332.4 216 80.1
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 3.4e-89 332.0 218 78.9
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 1.3e-88 330.1 216 80.6
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 6.3e-88 327.8 216 77.3
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 8.3e-88 327.4 216 77.3
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 1.4e-87 326.6 214 79.4
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 2.4e-87 325.9 216 77.3
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 4.1e-87 325.1 215 81.4
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 9.1e-87 323.9 216 80.6
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 2.0e-86 322.8 216 76.9
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 2.0e-86 322.8 216 74.1
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 1.7e-85 319.7 165 95.8
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 4.2e-84 315.1 165 96.4
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 3.6e-83 312.0 165 95.2
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 6.1e-83 311.2 276 64.1
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 6.8e-82 307.8 216 76.9
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 9.2e-79 297.4 216 75.5
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 1.6e-78 296.6 216 74.5
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 3.5e-78 295.4 216 75.0
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 1.3e-77 293.5 216 74.5
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 8.0e-75 284.3 217 69.1
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 1.8e-74 283.1 216 72.7
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 2.3e-74 282.7 203 76.4
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 8.9e-74 280.8 180 87.2
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 2.0e-73 279.6 216 68.5
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 3.4e-73 278.9 353 50.1
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 4.4e-73 278.5 217 68.7
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 5.0e-69 265.0 165 82.4
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 1.4e-66 256.9 217 67.3
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 5.2e-66 255.0 144 82.6
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 3.6e-59 232.3 217 57.1
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 1.5e-57 226.9 273 56.8
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 6.4e-56 221.5 233 53.2
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 7.6e-49 198.0 136 80.1
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 2.2e-48 196.4 108 83.3
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 2.2e-48 196.4 108 83.3
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 5.1e-45 185.3 177 57.6
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 2.1e-43 179.9 214 48.1
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.8e-42 176.8 135 72.6
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 3.8e-40 169.1 114 79.8
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 5.4e-39 165.2 85 92.9
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 7.8e-38 161.4 106 75.5
HPP92_023929 Vanilla planifolia HOM05D001880 ORTHO05D005098 2.5e-36 156.4 84 84.5
Zm00001eb036010 Zea mays HOM05D001880 ORTHO05D005098 1.3e-35 154.1 101 84.2
Zm00001eb052320 Zea mays HOM05D001880 ORTHO05D005098 1.3e-35 154.1 101 84.2
Zm00001eb071380 Zea mays HOM05D001880 ORTHO05D005098 1.3e-35 154.1 101 84.2
Zm00001eb291550 Zea mays HOM05D001880 ORTHO05D005098 1.3e-35 154.1 101 84.2
Zm00001eb391830 Zea mays HOM05D001880 ORTHO05D005098 1.3e-35 154.1 101 84.2
Sabra06G0189300 Salix brachista HOM05D001880 ORTHO05D005098 2.1e-35 153.3 81 88.9
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 1.8e-34 150.2 81 85.2
Cc00_g34580 Coffea canephora HOM05D001880 ORTHO05D005098 4.0e-26 122.5 71 74.6
CSS0036439 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 2.7e-22 109.8 63 93.7
Gorai.011G178000 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.3e-19 100.9 74 77.0
Gorai.012G085200 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.5e-17 94.0 68 76.5
Gorai.011G118500 Gossypium raimondii HOM05D001880 ORTHO05D013650 4.8e-11 72.4 39 82.1
Gorai.002G175500 Gossypium raimondii HOM05D001035 ORTHO05D013650 1.8e-10 70.5 39 79.5
SalBow5G0200 Salvia bowleyana HOM05D001880 ORTHO05D355852 1.7e-08 63.9 48 66.7
SalBow8G1849 Salvia bowleyana HOM05D001880 ORTHO05D363534 1.7e-08 63.9 48 66.7
SalBow8G2043 Salvia bowleyana HOM05D001880 ORTHO05D356500 1.7e-08 63.9 48 66.7
SalBow6G5594 Salvia bowleyana HOM05D001880 ORTHO05D357349 6.5e-08 62.0 48 64.6


User provided reference genes

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