Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008102 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 3.3e-186 654.8 318 100.0
Rhsim13G0136400 Rhododendron simsii HOM05D006345 ORTHO05D007428 1.2e-119 433.7 248 85.9
CiPaw.01G263700 Carya illinoinensis HOM05D006345 ORTHO05D007428 3.9e-118 428.7 246 84.6
QL08p052794 Quercus lobata HOM05D006345 ORTHO05D007428 3.6e-116 422.2 250 82.8
Dinv19690 Davidia involucrata HOM05D006345 ORTHO05D007428 2.4e-115 419.5 249 81.9
Duzib212G0272 Durio zibethinus HOM05D006345 ORTHO05D007428 3.8e-113 412.1 250 80.0
Nn3g17198 Nelumbo nucifera HOM05D006345 ORTHO05D007428 4.9e-113 411.8 249 79.5
TAR624G0710 Trochodendron aralioides HOM05D006345 ORTHO05D007428 6.4e-113 411.4 249 81.5
Aqoxy7G02153 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 4.6e-111 405.2 249 77.1
Ciclev10016345m.g Citrus clementina HOM05D006345 ORTHO05D007428 1.3e-110 403.7 248 80.2
ClCG02G007550 Citrullus lanatus HOM05D006345 ORTHO05D007428 3.9e-110 402.1 246 78.5
CiPaw.14G048700 Carya illinoinensis HOM05D006345 ORTHO05D007428 1.5e-109 400.2 234 82.1
Thecc.04G283900 Theobroma cacao HOM05D006345 ORTHO05D007428 4.3e-109 398.7 249 77.1
Ca_19950_v3 Cicer arietinum L. HOM05D006345 ORTHO05D007428 7.3e-109 397.9 247 78.1
FvH4_3g13390 Fragaria vesca HOM05D006345 ORTHO05D007428 7.3e-109 397.9 248 78.6
Manes.16G061100 Manihot esculenta HOM05D006345 ORTHO05D007428 7.3e-109 397.9 249 78.3
Sabra01G0052000 Salix brachista HOM05D006345 ORTHO05D007428 7.3e-109 397.9 249 77.5
Cpa.g.sc12.137 Carica papaya HOM05D006345 ORTHO05D007428 9.6e-109 397.5 249 78.7
Prupe.4G121300 Prunus persica HOM05D006345 ORTHO05D007428 1.6e-108 396.7 242 81.0
FAN21G0075 Fragaria x ananassa HOM05D006345 ORTHO05D007428 2.1e-108 396.4 248 78.2
Lalb_Chr07g0189941 Lupinus albus HOM05D006345 ORTHO05D007428 2.8e-108 396.0 247 78.1
MELO3C018575.2 Cucumis melo HOM05D006345 ORTHO05D007428 4.7e-108 395.2 246 76.8
FAN11G3812 Fragaria x ananassa HOM05D006345 ORTHO05D007428 4.7e-108 395.2 248 78.2
CsaV3_7G007230 Cucumis sativus L. HOM05D006345 ORTHO05D007428 6.2e-108 394.8 246 76.8
Sed0017834 Sechium edule HOM05D006345 ORTHO05D007428 6.2e-108 394.8 246 78.5
RcHm_v2.0_Chr5g0022101 Rosa chinensis HOM05D006345 ORTHO05D007428 1.1e-107 394.0 248 78.2
Sed0021159 Sechium edule HOM05D006345 ORTHO05D007428 1.1e-107 394.0 245 78.4
Gohir.A10G163600 Gossypium hirsutum HOM05D006345 ORTHO05D007428 1.4e-107 393.7 249 75.9
Glyma.03G027700 Glycine max HOM05D006345 ORTHO05D007428 2.4e-107 392.9 247 76.9
Gorai.011G189500 Gossypium raimondii HOM05D006345 ORTHO05D007428 2.4e-107 392.9 249 75.9
Phvul.003G037201 Phaseolus vulgaris HOM05D006345 ORTHO05D007428 3.1e-107 392.5 246 77.6
Potri.001G073700 Populus trichocarpa HOM05D006345 ORTHO05D007428 3.1e-107 392.5 248 77.4
FAN16G3736 Fragaria x ananassa HOM05D006345 ORTHO05D007428 4.0e-107 392.1 248 78.2
MD05G1242200 Malus domestica HOM05D006345 ORTHO05D007428 3.4e-106 389.0 242 78.9
FAN25G2350 Fragaria x ananassa HOM05D006345 ORTHO05D007428 4.4e-106 388.7 248 77.4
Psat7g230920 Pisum sativum HOM05D006345 ORTHO05D007428 9.9e-106 387.5 246 76.4
MSTRG.21400 Avicennia marina HOM05D006345 ORTHO05D007428 3.8e-105 385.6 249 75.9
DCAR_001254 Daucus carota HOM05D006345 ORTHO05D007428 3.8e-105 385.6 251 73.3
Glyma.01G139633 Glycine max HOM05D006345 ORTHO05D007428 3.8e-105 385.6 247 76.5
Gohir.D10G170000 Gossypium hirsutum HOM05D006345 ORTHO05D007428 3.8e-105 385.6 249 73.9
MBI16_g30839_MAGBIO Magnolia biondii HOM05D006345 ORTHO05D007428 4.9e-105 385.2 246 76.0
COL.COLO4_13882 Corchorus olitorius HOM05D006345 ORTHO05D007428 1.1e-104 384.0 250 75.2
Nitab4.5_0001925g0110 Nicotiana tabacum HOM05D006345 ORTHO05D007428 1.1e-104 384.0 218 82.6
Cc09_g04580 Coffea canephora HOM05D006345 ORTHO05D007428 5.4e-104 381.7 249 73.5
arahy.Tifrunner.gnm1.ann1.P3RVZQ Arachis hypogaea HOM05D006345 ORTHO05D007428 7.1e-104 381.3 249 74.7
arahy.Tifrunner.gnm1.ann1.G9BQRV Arachis hypogaea HOM05D006345 ORTHO05D007428 9.3e-104 380.9 249 74.3
Medtr4g024860 Medicago truncatula HOM05D000001 ORTHO05D000003 1.2e-103 380.6 245 75.5
Lj3g0013440 Lotus japonicus HOM05D006345 ORTHO05D007428 2.1e-103 379.8 245 75.9
Nitab4.5_0008647g0020 Nicotiana tabacum HOM05D006345 ORTHO05D007428 2.1e-103 379.8 218 81.7
PSO675G7514 Papaver somniferum HOM05D006345 ORTHO05D007428 2.1e-103 379.8 255 74.1
TPR.G7580 Trifolium pratense HOM05D006345 ORTHO05D007428 2.1e-103 379.8 248 75.0
VMungo1383G2204 Vigna mungo HOM05D006345 ORTHO05D007428 2.1e-103 379.8 247 73.7
PGR042G3945 Punica granatum HOM05D006345 ORTHO05D007428 6.0e-103 378.3 249 74.7
Cc06_g02140 Coffea canephora HOM05D006345 ORTHO05D007428 1.3e-102 377.1 249 72.7
PGSC0003DMG400023836 Solanum tuberosum HOM05D006345 ORTHO05D007428 1.3e-102 377.1 231 77.1
arahy.Tifrunner.gnm1.ann1.S1VR06 Arachis hypogaea HOM05D006345 ORTHO05D007428 2.3e-102 376.3 249 73.5
TWI53G2073 Tripterygium wilfordii HOM05D006345 ORTHO05D007428 2.3e-102 376.3 249 73.5
Sc05g0003040 Simmondsia chinensis HOM05D006345 ORTHO05D007428 3.9e-102 375.6 250 74.0
Peaxi162Scf00062g10131 Petunia axillaris HOM05D006345 ORTHO05D007428 5.1e-102 375.2 231 77.1
arahy.Tifrunner.gnm1.ann1.W97VC3 Arachis hypogaea HOM05D006345 ORTHO05D007428 8.7e-102 374.4 249 73.1
ECA238G2485 Erigeron canadensis HOM05D006345 ORTHO05D007428 8.7e-102 374.4 248 71.8
Lalb_Chr13g0291791 Lupinus albus HOM05D006345 ORTHO05D007428 8.7e-102 374.4 246 73.6
Oeu012935.1 Olea europaea HOM05D006345 ORTHO05D007428 1.5e-101 373.6 218 80.7
HanXRQChr14g0447431 Helianthus annuus HOM05D006345 ORTHO05D007428 2.5e-101 372.9 248 70.2
Eucgr.F03783 Eucalyptus grandis HOM05D006345 ORTHO05D007428 3.3e-101 372.5 253 71.5
THA.LOC104822694 Tarenaya hassleriana HOM05D006345 ORTHO05D007428 5.6e-101 371.7 251 73.3
PSO541G0968 Papaver somniferum HOM05D006345 ORTHO05D007428 9.6e-101 370.9 255 72.9
CAN.G575.62 Capsicum annuum HOM05D006345 ORTHO05D007428 3.6e-100 369.0 231 75.3
Aqoxy3G02382 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 6.2e-100 368.2 218 79.4
SalBow7G0027 Salvia bowleyana HOM05D006345 ORTHO05D007428 8.1e-100 367.9 250 70.8
Sopen12g034690 Solanum pennellii HOM05D006345 ORTHO05D007428 3.1e-99 365.9 231 74.9
Oeu017184.1 Olea europaea HOM05D006345 ORTHO05D007428 1.5e-98 363.6 218 79.4
Migut.D00572 Erythranthe guttata HOM05D006345 ORTHO05D007428 3.4e-98 362.5 230 73.9
CANSAT11G1250 Cannabis sativa HOM05D006345 ORTHO05D007428 1.3e-97 360.5 216 78.7
Aa31LG8G650 Aethionema arabicum HOM05D006345 ORTHO05D007428 2.2e-97 359.8 254 67.7
PSO782G3410 Papaver somniferum HOM05D006345 ORTHO05D007428 2.9e-97 359.4 221 80.5
Lsat_1_v5_gn_3_103240 Lactuca sativa HOM05D006345 ORTHO05D007428 4.9e-97 358.6 230 75.2
SalBow2G1193 Salvia bowleyana HOM05D006345 ORTHO05D007428 1.2e-95 354.0 250 68.0
EL10Ac3g05939 Beta vulgaris HOM05D006345 ORTHO05D007428 2.7e-95 352.8 219 76.3
Ah.07g202050 Amaranthus hybridus HOM05D006345 ORTHO05D007428 3.9e-94 349.0 249 68.3
AL3G25340 Arabidopsis lyrata HOM05D006345 ORTHO05D007428 4.3e-93 345.5 218 75.7
SGA_v2.0_scaffold8G04616 Striga asiatica HOM05D006345 ORTHO05D007428 4.3e-93 345.5 214 74.3
AT3G13440 Arabidopsis thaliana HOM05D006345 ORTHO05D007428 7.4e-93 344.7 223 73.1
CARHR088090 Cardamine hirsuta HOM05D006345 ORTHO05D007428 3.7e-92 342.4 218 74.8
Thhalv10021414m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 4.8e-92 342.0 224 72.3
AUR62015383 Chenopodium quinoa HOM05D006345 ORTHO05D007428 1.8e-91 340.1 249 67.9
unitig_52.g17581 Utricularia gibba HOM05D006345 ORTHO05D007428 4.0e-91 339.0 250 65.2
Carub.0006s3398 Capsella rubella HOM05D006345 ORTHO05D007428 5.3e-91 338.6 226 70.8
Carub.0003s1288 Capsella rubella HOM05D006345 ORTHO05D007428 6.9e-91 338.2 216 75.0
BcaB04g21015 Brassica carinata HOM05D006345 ORTHO05D007428 9.9e-90 334.3 228 70.6
Sp3g11640 Schrenkiella parvula HOM05D006345 ORTHO05D007428 9.9e-90 334.3 230 70.0
Ah.15g099610 Amaranthus hybridus HOM05D006345 ORTHO05D007428 2.2e-89 333.2 250 66.4
BcaC09g48312 Brassica carinata HOM05D006345 ORTHO05D007428 2.9e-89 332.8 223 70.9
C01p51620 Brassica napus HOM05D006345 ORTHO05D007428 2.9e-89 332.8 223 70.9
BolC1t05105H Brassica oleracea HOM05D006345 ORTHO05D007428 2.9e-89 332.8 223 70.9
BraA05t22416Z Brassica rapa HOM05D002140 ORTHO05D007428 1.1e-88 330.9 229 67.7
Lsat_1_v5_gn_2_63801 Lactuca sativa HOM05D006345 ORTHO05D007428 3.2e-88 329.3 250 62.8
ATR0561G247 Amborella trichopoda HOM05D006345 ORTHO05D007428 4.2e-88 328.9 247 65.6
CDE04G1044 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 5.5e-88 328.6 216 70.4
A01p40130 Brassica napus HOM05D006345 ORTHO05D007428 7.1e-88 328.2 223 70.0
CDE06G0136 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 7.1e-88 328.2 216 70.4
BraA01t04054Z Brassica rapa HOM05D006345 ORTHO05D007428 1.2e-87 327.4 223 69.5
BcaC05g29179 Brassica carinata HOM05D002140 ORTHO05D007428 1.6e-87 327.0 229 66.4
C05p54470 Brassica napus HOM05D002140 ORTHO05D007428 1.6e-87 327.0 229 66.4
BolC5t34114H Brassica oleracea HOM05D002140 ORTHO05D007428 1.6e-87 327.0 229 66.4
A05p36090 Brassica napus HOM05D002140 ORTHO05D007428 7.9e-87 324.7 229 65.9
SHI16738 Sapria himalayana HOM05D006345 ORTHO05D007428 6.7e-86 321.6 209 74.6
HPP92_018755 Vanilla planifolia HOM05D006345 ORTHO05D007428 1.3e-84 317.4 210 70.0
Mapoly0069s0066 Marchantia polymorpha HOM05D006345 ORTHO05D007428 1.4e-83 313.9 246 62.6
Os03g0824200 Oryza sativa ssp. japonica HOM05D006345 ORTHO05D007428 1.4e-83 313.9 244 62.3
Pp3c9_17440 Physcomitrium patens HOM05D006345 ORTHO05D007428 1.1e-80 304.3 249 60.2
Zm00001eb211470 Zea mays HOM05D006345 ORTHO05D007428 2.5e-80 303.1 209 68.9
Solyc12g100070.3 Solanum lycopersicum HOM05D006345 ORTHO05D007428 1.6e-79 300.4 180 76.7
SMO358G0200 Selaginella moellendorffii HOM05D006345 ORTHO05D007428 1.9e-77 293.5 210 66.2
Thhalv10009961m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 1.3e-76 290.8 223 65.5
CBR_g45447 Chara braunii HOM05D006345 ORTHO05D007428 2.4e-75 286.6 230 59.6
AUR62002307 Chenopodium quinoa HOM05D006345 ORTHO05D007428 1.7e-73 280.4 249 60.2
AagrBONN_evm.TU.Sc2ySwM_117.4015 Anthoceros agrestis HOM05D006345 ORTHO05D007428 2.2e-73 280.0 237 55.7
CSS0000171 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 3.3e-69 266.2 131 97.7
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 2.9e-65 253.1 185 66.5
SEGI_21458 Sequoiadendron giganteum HOM05D006345 ORTHO05D007428 4.8e-60 235.7 163 70.6
CAN.G1126.44 Capsicum annuum HOM05D006345 ORTHO05D007428 1.2e-47 194.5 151 64.2
Zm00001eb141630 Zea mays HOM05D006345 ORTHO05D007428 6.7e-46 188.7 144 64.6
Cre01.g036750 Chlamydomonas reinhardtii HOM05D006345 ORTHO05D007428 8.8e-46 188.3 213 44.6
Potri.003G157201 Populus trichocarpa HOM05D006345 ORTHO05D007428 8.5e-41 171.8 114 72.8
Sabra03G0114100 Salix brachista HOM05D000029 ORTHO05D000854 1.3e-33 147.9 191 43.5
MCO02G297 Micromonas commoda HOM05D006345 ORTHO05D007428 1.8e-30 137.5 170 42.4
Zm00001eb356470 Zea mays HOM05D006345 ORTHO05D007428 8.9e-30 135.2 98 67.3
ATR0006G036 Amborella trichopoda HOM05D006345 ORTHO05D007428 1.2e-13 81.6 48 75.0
Lj1P1152T38 Lonicera japonica HOM05D006345 ORTHO05D007428 2.2e-12 77.4 46 71.7
GSVIVG01023955001 Vitis vinifera HOM05D000593 ORTHO05D000562 7.3e-08 62.4 40 70.0
Cfa025913 Carpinus fangiana HOM05D006345 ORTHO05D007428 2.1e-07 60.8 227 26.9
Aa31LG1G17780 Aethionema arabicum HOM05D006002 ORTHO05D007651 6.8e-06 55.8 133 33.1


User provided reference genes

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