Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008098 Camellia sinensis var. sinensis HOM05D007045 ORTHO05D008872 8.1e-59 230.3 127 100.0
Actinidia34304 Actinidia chinensis HOM05D007045 ORTHO05D008872 6.9e-42 174.1 127 74.0
TAR375G0210 Trochodendron aralioides HOM05D007045 ORTHO05D008872 4.9e-40 167.9 127 69.3
Actinidia08743 Actinidia chinensis HOM05D007045 ORTHO05D008872 1.6e-38 162.9 127 71.7
Dinv29160 Davidia involucrata HOM05D007045 ORTHO05D008872 1.9e-36 156.0 103 80.6
QL09p024203 Quercus lobata HOM05D007045 ORTHO05D008872 1.6e-35 152.9 126 66.7
QL09p024468 Quercus lobata HOM05D007045 ORTHO05D008872 1.6e-35 152.9 126 66.7
Nn1g01937 Nelumbo nucifera HOM05D007045 ORTHO05D008872 4.0e-34 148.3 127 63.0
Glyma.05G000800 Glycine max HOM05D007045 ORTHO05D008872 2.9e-32 142.1 127 64.6
Hma1.2p1_1680F.1_g297210 Hydrangea macrophylla HOM05D007045 ORTHO05D008872 2.9e-32 142.1 151 56.3
TPR.G25217 Trifolium pratense HOM05D007045 ORTHO05D008872 2.9e-32 142.1 127 62.2
Oeu041498.1 Olea europaea HOM05D007045 ORTHO05D008872 4.9e-32 141.4 103 72.8
Cfa015871 Carpinus fangiana HOM05D007045 ORTHO05D008872 6.4e-32 141.0 124 62.9
CiPaw.05G239000 Carya illinoinensis HOM05D007045 ORTHO05D008872 2.4e-31 139.0 127 61.4
GSVIVG01024412001 Vitis vinifera HOM05D007045 ORTHO05D008872 3.2e-31 138.7 130 61.5
Eucgr.K00089 Eucalyptus grandis HOM05D007045 ORTHO05D008872 4.2e-31 138.3 133 63.9
Sopen03g027710 Solanum pennellii HOM05D007045 ORTHO05D008872 4.2e-31 138.3 130 62.3
Solyc03g096960.3 Solanum lycopersicum HOM05D007045 ORTHO05D008872 1.2e-30 136.7 130 63.1
Ca_04126_v3 Cicer arietinum L. HOM05D007045 ORTHO05D008872 3.5e-30 135.2 129 62.0
Medtr6g004010 Medicago truncatula HOM05D007045 ORTHO05D008872 4.6e-30 134.8 128 60.2
Hund09789 Selenicereus undatus HOM05D007045 ORTHO05D008872 4.6e-30 134.8 128 65.6
MSTRG.26931 Avicennia marina HOM05D007045 ORTHO05D008872 6.0e-30 134.4 127 63.0
Phvul.004G000900 Phaseolus vulgaris HOM05D007045 ORTHO05D008872 7.9e-30 134.0 127 60.6
Lsat_1_v5_gn_9_47440 Lactuca sativa HOM05D007045 ORTHO05D008872 1.8e-29 132.9 128 58.6
vmacro10189 Vaccinium macrocarpon HOM05D007045 ORTHO05D008872 2.3e-29 132.5 78 88.5
vmacro23523 Vaccinium macrocarpon HOM05D007045 ORTHO05D008872 2.3e-29 132.5 78 88.5
HanXRQChr05g0141731 Helianthus annuus HOM05D007045 ORTHO05D008872 5.1e-29 131.3 127 59.8
Manes.08G162500 Manihot esculenta HOM05D007045 ORTHO05D008872 6.7e-29 131.0 129 59.7
ECA232G1212 Erigeron canadensis HOM05D007045 ORTHO05D008872 1.5e-28 129.8 133 57.9
Psat1g052360 Pisum sativum HOM05D007045 ORTHO05D008872 1.5e-28 129.8 130 61.5
arahy.Tifrunner.gnm1.ann1.X2XK4P Arachis hypogaea HOM05D007045 ORTHO05D008872 4.3e-28 128.3 133 63.9
PSO063G7366 Papaver somniferum HOM05D007045 ORTHO05D008872 5.6e-28 127.9 133 57.9
PSO782G4413 Papaver somniferum HOM05D007045 ORTHO05D008872 5.6e-28 127.9 133 57.9
SGA_v2.0_scaffold44G16886 Striga asiatica HOM05D007045 ORTHO05D008872 5.6e-28 127.9 130 56.2
VMungo0464G1228 Vigna mungo HOM05D007045 ORTHO05D008872 5.6e-28 127.9 127 60.6
THA.LOC104805790 Tarenaya hassleriana HOM05D007045 ORTHO05D008872 9.6e-28 127.1 131 58.8
Glyma.19G000800 Glycine max HOM05D007045 ORTHO05D008872 1.3e-27 126.7 103 67.0
Prupe.2G325600 Prunus persica HOM05D007045 ORTHO05D008872 1.6e-27 126.3 132 58.3
DCAR_020406 Daucus carota HOM05D007045 ORTHO05D008872 3.7e-27 125.2 103 66.0
PGR142G4292 Punica granatum HOM05D007045 ORTHO05D008872 3.7e-27 125.2 136 57.4
THA.LOC104821194 Tarenaya hassleriana HOM05D007045 ORTHO05D008872 3.7e-27 125.2 132 58.3
arahy.Tifrunner.gnm1.ann1.X6PR1P Arachis hypogaea HOM05D007045 ORTHO05D008872 6.2e-27 124.4 119 63.0
Duzib168G0464 Durio zibethinus HOM05D007045 ORTHO05D008872 6.2e-27 124.4 134 57.5
Lj2g0018633 Lotus japonicus HOM05D007045 ORTHO05D008872 1.4e-26 123.2 130 58.5
PGSC0003DMG400000566 Solanum tuberosum HOM05D007045 ORTHO05D008872 1.4e-26 123.2 130 60.0
Atru.chr12.1972 Acer truncatum HOM05D007045 ORTHO05D008872 3.1e-26 122.1 98 65.3
Ciclev10022834m.g Citrus clementina HOM05D007045 ORTHO05D008872 3.1e-26 122.1 133 55.6
HPP92_009021 Vanilla planifolia HOM05D007045 ORTHO05D008872 4.0e-26 121.7 126 54.8
SalBow4G0316 Salvia bowleyana HOM05D007045 ORTHO05D008872 9.0e-26 120.6 127 54.3
Nitab4.5_0011930g0010 Nicotiana tabacum HOM05D007045 ORTHO05D008872 2.6e-25 119.0 106 66.0
Sc15g0002300 Simmondsia chinensis HOM05D007045 ORTHO05D008872 2.6e-25 119.0 103 61.2
Migut.F00099 Erythranthe guttata HOM05D007045 ORTHO05D008872 3.4e-25 118.6 125 56.8
Nitab4.5_0000021g0510 Nicotiana tabacum HOM05D007045 ORTHO05D008872 4.5e-25 118.2 125 56.8
TWI34G0185 Tripterygium wilfordii HOM05D007045 ORTHO05D008872 4.5e-25 118.2 128 54.7
COL.COLO4_25316 Corchorus olitorius HOM05D007045 ORTHO05D008872 5.8e-25 117.9 128 57.8
Sp1g07240 Schrenkiella parvula HOM05D007045 ORTHO05D008872 5.8e-25 117.9 127 55.1
Aqoxy3G02091 Aquilegia oxysepala HOM05D007045 ORTHO05D008872 1.3e-24 116.7 132 54.5
EL10Ac3g05081 Beta vulgaris HOM05D007045 ORTHO05D008872 1.3e-24 116.7 129 58.1
Thhalv10009120m.g Eutrema salsugineum HOM05D007045 ORTHO05D008872 4.9e-24 114.8 127 53.5
Aa31sc20G150 Aethionema arabicum HOM05D007045 ORTHO05D008872 8.4e-24 114.0 131 55.0
CDE03G0192 Ceratophyllum demersum HOM05D007045 ORTHO05D008872 8.4e-24 114.0 103 60.2
AUR62002059 Chenopodium quinoa HOM05D007045 ORTHO05D008872 8.4e-24 114.0 127 54.3
AT1G08580 Arabidopsis thaliana HOM05D007045 ORTHO05D008872 1.4e-23 113.2 127 52.0
unitig_92.g28229 Utricularia gibba HOM05D007045 ORTHO05D008872 1.4e-23 113.2 127 54.3
A06p05570 Brassica napus HOM05D007045 ORTHO05D008872 2.5e-23 112.5 127 50.4
BraA06t23765Z Brassica rapa HOM05D007045 ORTHO05D008872 2.5e-23 112.5 127 50.4
Thecc.09G264800 Theobroma cacao HOM05D007045 ORTHO05D008872 3.2e-23 112.1 134 55.2
CAN.G303.80 Capsicum annuum HOM05D007045 ORTHO05D008872 4.2e-23 111.7 127 53.5
Cc02_g00300 Coffea canephora HOM05D007045 ORTHO05D008872 4.2e-23 111.7 140 55.0
Potri.019G049300 Populus trichocarpa HOM05D007045 ORTHO05D008872 4.2e-23 111.7 128 56.2
FvH4_7g33930 Fragaria vesca HOM05D007045 ORTHO05D008872 5.5e-23 111.3 132 51.5
FAN01G0253 Fragaria x ananassa HOM05D007045 ORTHO05D008872 5.5e-23 111.3 132 51.5
MD07G1308400 Malus domestica HOM05D007045 ORTHO05D008872 5.5e-23 111.3 108 61.1
Peaxi162Scf00745g00819 Petunia axillaris HOM05D007045 ORTHO05D008872 5.5e-23 111.3 126 51.6
FAN03G1405 Fragaria x ananassa HOM05D007045 ORTHO05D008872 9.3e-23 110.5 130 53.1
RcHm_v2.0_Chr1g0384121 Rosa chinensis HOM05D007045 ORTHO05D008872 9.3e-23 110.5 129 53.5
Sabra19G0058900 Salix brachista HOM05D007045 ORTHO05D008872 9.3e-23 110.5 127 55.9
BcaC07g41937 Brassica carinata HOM05D007045 ORTHO05D008872 1.2e-22 110.2 127 48.8
C08p49930 Brassica napus HOM05D007045 ORTHO05D008872 1.2e-22 110.2 127 48.8
BolC8t52521H Brassica oleracea HOM05D007045 ORTHO05D008872 1.2e-22 110.2 127 48.8
Ah.04g156750 Amaranthus hybridus HOM05D007045 ORTHO05D008872 2.1e-22 109.4 98 62.2
BraA09t41928Z Brassica rapa HOM05D007045 ORTHO05D008872 2.7e-22 109.0 127 48.0
Gohir.A09G104600 Gossypium hirsutum HOM05D007045 ORTHO05D008872 2.7e-22 109.0 137 53.3
Gorai.006G118700 Gossypium raimondii HOM05D007045 ORTHO05D008872 2.7e-22 109.0 133 53.4
BcaB07g34101 Brassica carinata HOM05D007045 ORTHO05D008872 3.5e-22 108.6 128 49.2
C05p06680 Brassica napus HOM05D007045 ORTHO05D008872 3.5e-22 108.6 128 49.2
BolC5t29428H Brassica oleracea HOM05D007045 ORTHO05D008872 3.5e-22 108.6 128 49.2
MD01G1235600 Malus domestica HOM05D007045 ORTHO05D008872 3.5e-22 108.6 76 73.7
Gohir.D09G101300 Gossypium hirsutum HOM05D007045 ORTHO05D008872 4.6e-22 108.2 137 53.3
AUR62028173 Chenopodium quinoa HOM05D007045 ORTHO05D008872 6.0e-22 107.8 128 55.5
A09p65840 Brassica napus HOM05D007045 ORTHO05D008872 7.9e-22 107.5 127 47.2
SalBow4G2109 Salvia bowleyana HOM05D007045 ORTHO05D008872 1.3e-21 106.7 159 44.0
CANSAT56G0844 Cannabis sativa HOM05D007045 ORTHO05D008872 8.7e-21 104.0 86 66.3
CANSAT56G3248 Cannabis sativa HOM05D007045 ORTHO05D008872 8.7e-21 104.0 77 70.1
FAN10G3708 Fragaria x ananassa HOM05D007045 ORTHO05D008872 8.7e-21 104.0 99 56.6
AL1G19010 Arabidopsis lyrata HOM05D007045 ORTHO05D008872 1.1e-20 103.6 127 52.8
CDE06G1066 Ceratophyllum demersum HOM05D007045 ORTHO05D008872 3.3e-20 102.1 81 65.4
ATR0829G056 Amborella trichopoda HOM05D007045 ORTHO05D008872 4.8e-19 98.2 133 49.6
Sed0010546 Sechium edule HOM05D007045 ORTHO05D008872 1.1e-18 97.1 128 48.4
CARHR008480 Cardamine hirsuta HOM05D007045 ORTHO05D008872 1.8e-18 96.3 127 47.2
CsaV3_3G015710 Cucumis sativus L. HOM05D007045 ORTHO05D008872 2.0e-17 92.8 127 48.0
Potri.013G091200 Populus trichocarpa HOM05D007045 ORTHO05D008872 2.0e-17 92.8 81 61.7
Os02g0604100 Oryza sativa ssp. japonica HOM05D007045 ORTHO05D008872 4.5e-17 91.7 130 46.2
MELO3C006770.2 Cucumis melo HOM05D007045 ORTHO05D008872 1.0e-16 90.5 127 47.2
Zm00001eb246550 Zea mays HOM05D007045 ORTHO05D008872 2.7e-14 82.4 130 42.3
Carub.0001s0794 Capsella rubella HOM05D007045 ORTHO05D008872 2.3e-13 79.3 70 60.0
ClCG05G007020 Citrullus lanatus HOM05D007045 ORTHO05D008872 3.3e-12 75.5 103 44.7
MELO3C032558.2 Cucumis melo HOM05D007045 ORTHO05D008872 9.7e-12 73.9 77 55.8
Mapoly0084s0018 Marchantia polymorpha HOM05D007045 ORTHO05D008872 4.5e-09 65.1 131 34.4
TAR362G1004 Trochodendron aralioides HOM05D007045 ORTHO05D008872 7.2e-07 57.8 54 57.4
Pp3c13_5290 Physcomitrium patens HOM05D007045 ORTHO05D008872 7.9e-06 54.3 142 35.9


User provided reference genes

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