Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008096 Camellia sinensis var. sinensis HOM05D039235 ORTHO05D110491 1.1e-97 360.1 198 100.0
CSS0019805 Camellia sinensis var. sinensis HOM05D039235 ORTHO05D110089 1.6e-37 160.2 154 59.1
CSS0013422 Camellia sinensis var. sinensis HOM05D039235 ORTHO05D109834 9.7e-35 151.0 157 66.2
CSS0018576 Camellia sinensis var. sinensis HOM05D062195 ORTHO05D112451 2.0e-08 63.5 126 46.0
CSS0017079 Camellia sinensis var. sinensis HOM05D000639 ORTHO05D003485 1.3e-07 60.8 77 49.4
Oeu049538.1 Olea europaea HOM05D000639 ORTHO05D003485 1.3e-07 60.8 77 49.4
Oeu052131.2 Olea europaea HOM05D000639 ORTHO05D003485 1.3e-07 60.8 77 49.4
Lj7A672G59 Lonicera japonica HOM05D000639 ORTHO05D003485 1.7e-07 60.5 77 48.1
unitig_749.g14226 Utricularia gibba HOM05D000639 ORTHO05D003485 1.7e-07 60.5 77 48.1
MSTRG.19531 Avicennia marina HOM05D000639 ORTHO05D003485 2.3e-07 60.1 77 46.8
CSS0020528 Camellia sinensis var. sinensis HOM05D000639 ORTHO05D003485 2.3e-07 60.1 77 46.8
CSS0039144 Camellia sinensis var. sinensis HOM05D000639 ORTHO05D003485 2.3e-07 60.1 77 46.8
Rhsim05G0034500 Rhododendron simsii HOM05D000639 ORTHO05D003485 2.3e-07 60.1 77 46.8
Rhsim05G0035500 Rhododendron simsii HOM05D000639 ORTHO05D003485 2.3e-07 60.1 77 46.8
SalBow8G1488 Salvia bowleyana HOM05D000639 ORTHO05D003485 2.3e-07 60.1 77 46.8
vmacro10810 Vaccinium macrocarpon HOM05D000639 ORTHO05D003485 2.3e-07 60.1 77 46.8
Cc06_g11070 Coffea canephora HOM05D000639 ORTHO05D003485 2.9e-07 59.7 77 46.8
Haze_25883 Corylus avellana HOM05D000639 ORTHO05D003485 3.8e-07 59.3 77 48.1
Dinv42294 Davidia involucrata HOM05D000639 ORTHO05D003485 3.8e-07 59.3 77 46.8
Actinidia25269 Actinidia chinensis HOM05D005623 ORTHO05D007130 5.0e-07 58.9 77 48.1
Actinidia39731 Actinidia chinensis HOM05D000639 ORTHO05D003485 5.0e-07 58.9 77 48.1
MSTRG.6041 Avicennia marina HOM05D000639 ORTHO05D003485 5.0e-07 58.9 77 45.5
DCAR_010683 Daucus carota HOM05D000639 ORTHO05D003485 5.0e-07 58.9 77 48.1
DCAR_024066 Daucus carota HOM05D000639 ORTHO05D003485 5.0e-07 58.9 77 45.5
Lj4A310G27 Lonicera japonica HOM05D000639 ORTHO05D003485 5.0e-07 58.9 77 48.1
Potri.018G067200 Populus trichocarpa HOM05D000639 ORTHO05D003485 5.0e-07 58.9 77 46.8
Sabra18G0059900 Salix brachista HOM05D000639 ORTHO05D003485 5.0e-07 58.9 77 46.8
Sed0025603 Sechium edule HOM05D000639 ORTHO05D003485 5.0e-07 58.9 77 46.8
SGA_v2.0_scaffold10G05206 Striga asiatica HOM05D000639 ORTHO05D003485 5.0e-07 58.9 77 46.8
Atru.chr7.1543 Acer truncatum HOM05D000639 ORTHO05D003485 6.6e-07 58.5 77 45.5
ECA234G3716 Erigeron canadensis HOM05D000639 ORTHO05D003485 6.6e-07 58.5 77 48.1
ECA240G2672 Erigeron canadensis HOM05D000639 ORTHO05D003485 6.6e-07 58.5 77 48.1
Migut.J00445 Erythranthe guttata HOM05D000639 ORTHO05D003485 6.6e-07 58.5 77 45.5
Gohir.A06G071100 Gossypium hirsutum HOM05D000639 ORTHO05D003485 6.6e-07 58.5 77 46.8
Gorai.009G030600 Gossypium raimondii HOM05D000639 ORTHO05D003485 6.6e-07 58.5 77 46.8
Hma1.2p1_0798F.1_g219550 Hydrangea macrophylla HOM05D000639 ORTHO05D003485 6.6e-07 58.5 77 46.8
SMO347G0013 Selaginella moellendorffii HOM05D000639 ORTHO05D003485 6.6e-07 58.5 77 46.8
TAR626G0175 Trochodendron aralioides HOM05D000639 ORTHO05D003485 6.6e-07 58.5 77 46.8
Duzib168G0050 Durio zibethinus HOM05D000639 ORTHO05D003485 8.6e-07 58.2 77 46.8
FvH4_1g06990 Fragaria vesca HOM05D000639 ORTHO05D003485 8.6e-07 58.2 77 45.5
FAN26G0954 Fragaria x ananassa HOM05D000639 ORTHO05D003485 8.6e-07 58.2 77 45.5
FAN28G2342 Fragaria x ananassa HOM05D000639 ORTHO05D003485 8.6e-07 58.2 77 45.5
Gohir.A05G028900 Gossypium hirsutum HOM05D000639 ORTHO05D003485 8.6e-07 58.2 77 45.5
Gohir.D05G030400 Gossypium hirsutum HOM05D000639 ORTHO05D003485 8.6e-07 58.2 77 45.5
Gohir.D06G069800 Gossypium hirsutum HOM05D000639 ORTHO05D003485 8.6e-07 58.2 77 45.5
Gohir.D11G158000 Gossypium hirsutum HOM05D000639 ORTHO05D003485 8.6e-07 58.2 77 45.5
Gorai.010G081400 Gossypium raimondii HOM05D000639 ORTHO05D003485 8.6e-07 58.2 77 45.5
HanXRQChr03g0060541 Helianthus annuus HOM05D000639 ORTHO05D003485 8.6e-07 58.2 77 48.1
Lsat_1_v5_gn_7_37861 Lactuca sativa HOM05D000639 ORTHO05D003485 8.6e-07 58.2 77 48.1
Sabra06G0118100 Salix brachista HOM05D000639 ORTHO05D003485 8.6e-07 58.2 77 46.8
Thecc.09G093100 Theobroma cacao HOM05D000639 ORTHO05D003485 8.6e-07 58.2 77 45.5
Lalb_Chr14g0375301 Lupinus albus HOM05D000639 ORTHO05D003485 1.1e-06 57.8 77 44.2
MD15G1203800 Malus domestica HOM05D000639 ORTHO05D003485 1.1e-06 57.8 77 46.8
PSO210G0623 Papaver somniferum HOM05D000639 ORTHO05D003485 1.1e-06 57.8 77 48.1
PSO210G7603 Papaver somniferum HOM05D000639 ORTHO05D003485 1.1e-06 57.8 77 48.1
Potri.006G149400 Populus trichocarpa HOM05D000639 ORTHO05D003485 1.1e-06 57.8 77 45.5
PGR004G2298 Punica granatum HOM05D000639 ORTHO05D003485 1.1e-06 57.8 77 46.8
QL02p063169 Quercus lobata HOM05D000639 ORTHO05D003485 1.1e-06 57.8 77 45.5
RcHm_v2.0_Chr2g0092941 Rosa chinensis HOM05D000639 ORTHO05D003485 1.1e-06 57.8 77 44.2
Hund25846 Selenicereus undatus HOM05D000639 ORTHO05D003485 1.1e-06 57.8 77 46.8
Ciclev10008497m.g Citrus clementina HOM05D000639 ORTHO05D003485 1.5e-06 57.4 77 45.5
CsaV3_1G040200 Cucumis sativus L. HOM05D000639 ORTHO05D003485 1.5e-06 57.4 77 46.8
CsaV3_UNG060470 Cucumis sativus L. HOM05D000639 ORTHO05D003485 1.5e-06 57.4 77 46.8
Aa31LG8G16650 Aethionema arabicum HOM05D000639 ORTHO05D003485 1.9e-06 57.0 77 45.5
Aqoxy7G01263 Aquilegia oxysepala HOM05D000639 ORTHO05D003485 1.9e-06 57.0 77 44.2
AT2G19670 Arabidopsis thaliana HOM05D000639 ORTHO05D003485 1.9e-06 57.0 77 45.5
BcaB03g16750 Brassica carinata HOM05D000639 ORTHO05D003485 1.9e-06 57.0 77 45.5
A07p01050 Brassica napus HOM05D000639 ORTHO05D003485 1.9e-06 57.0 77 45.5
C07p02210 Brassica napus HOM05D000639 ORTHO05D003485 1.9e-06 57.0 77 45.5
BolC7t40630H Brassica oleracea HOM05D000639 ORTHO05D003485 1.9e-06 57.0 77 45.5
BraA07t27906Z Brassica rapa HOM05D000639 ORTHO05D003485 1.9e-06 57.0 77 45.5
Carub.0003s3396 Capsella rubella HOM05D000639 ORTHO05D003485 1.9e-06 57.0 77 45.5
Carub.0007s1104 Capsella rubella HOM05D000639 ORTHO05D003485 1.9e-06 57.0 77 45.5
CAN.G1241.15 Capsicum annuum HOM05D000639 ORTHO05D003485 1.9e-06 57.0 77 45.5
ClCG03G015810 Citrullus lanatus HOM05D000639 ORTHO05D003485 1.9e-06 57.0 77 45.5
FAN19G0832 Fragaria x ananassa HOM05D000639 ORTHO05D003485 1.9e-06 57.0 80 43.8
FAN23G1511 Fragaria x ananassa HOM05D000639 ORTHO05D003485 1.9e-06 57.0 80 43.8
FAN26G2110 Fragaria x ananassa HOM05D000639 ORTHO05D003485 1.9e-06 57.0 80 43.8
Gohir.D01G144700 Gossypium hirsutum HOM05D000639 ORTHO05D003485 1.9e-06 57.0 163 30.1
HanXRQChr10g0319121 Helianthus annuus HOM05D000639 ORTHO05D003485 1.9e-06 57.0 77 45.5
Manes.03G030998 Manihot esculenta HOM05D000639 ORTHO05D003485 1.9e-06 57.0 77 45.5
Manes.03G031500 Manihot esculenta HOM05D000639 ORTHO05D003485 1.9e-06 57.0 77 45.5
Nitab4.5_0000713g0160 Nicotiana tabacum HOM05D000639 ORTHO05D003485 1.9e-06 57.0 77 45.5
Nitab4.5_0007297g0020 Nicotiana tabacum HOM05D000639 ORTHO05D003485 1.9e-06 57.0 77 45.5
Peaxi162Scf00498g00126 Petunia axillaris HOM05D000639 ORTHO05D003485 1.9e-06 57.0 77 45.5
Solyc12g008760.3 Solanum lycopersicum HOM05D000639 ORTHO05D003485 1.9e-06 57.0 77 45.5
Sopen12g003690 Solanum pennellii HOM05D000639 ORTHO05D003485 1.9e-06 57.0 77 45.5
PGSC0003DMG400000343 Solanum tuberosum HOM05D000639 ORTHO05D003485 1.9e-06 57.0 77 45.5
AL3G48570 Arabidopsis lyrata HOM05D000639 ORTHO05D003485 2.5e-06 56.6 77 44.2
arahy.Tifrunner.gnm1.ann1.HP0LAG Arachis hypogaea HOM05D000639 ORTHO05D003485 2.5e-06 56.6 77 44.2
BcaC06g36608 Brassica carinata HOM05D000639 ORTHO05D003485 2.5e-06 56.6 77 45.5
CARHR110120 Cardamine hirsuta HOM05D000639 ORTHO05D003485 2.5e-06 56.6 77 44.2
Glyma.01G003800 Glycine max HOM05D000639 ORTHO05D003485 2.5e-06 56.6 77 44.2
Glyma.07G128100 Glycine max HOM05D000639 ORTHO05D003485 2.5e-06 56.6 77 44.2
Lj2g0017649 Lotus japonicus HOM05D000639 ORTHO05D003485 2.5e-06 56.6 77 45.5
MD02G1074300 Malus domestica HOM05D000639 ORTHO05D003485 2.5e-06 56.6 77 45.5
Manes.16G104100 Manihot esculenta HOM05D000639 ORTHO05D003485 2.5e-06 56.6 77 44.2
Os09g0359800 Oryza sativa ssp. japonica HOM05D000639 ORTHO05D003485 2.5e-06 56.6 77 45.5
Peaxi162Scf00045g00323 Petunia axillaris HOM05D000639 ORTHO05D003485 2.5e-06 56.6 77 44.2
Phvul.004G172200 Phaseolus vulgaris HOM05D000639 ORTHO05D003485 2.5e-06 56.6 77 44.2
Prupe.7G213600 Prunus persica HOM05D000639 ORTHO05D003485 2.5e-06 56.6 77 45.5
Sp3g33020 Schrenkiella parvula HOM05D000639 ORTHO05D003485 2.5e-06 56.6 77 44.2
TWI32G0718 Tripterygium wilfordii HOM05D000639 ORTHO05D003485 2.5e-06 56.6 77 41.6
TWI63G1300 Tripterygium wilfordii HOM05D000639 ORTHO05D003485 2.5e-06 56.6 77 41.6
CANSAT56G2938 Cannabis sativa HOM05D000639 ORTHO05D003485 3.3e-06 56.2 77 44.2
CiPaw.03G218900 Carya illinoinensis HOM05D000639 ORTHO05D003485 3.3e-06 56.2 77 45.5
MELO3C015447.2 Cucumis melo HOM05D000639 ORTHO05D003485 3.3e-06 56.2 77 45.5
Eucgr.C03665 Eucalyptus grandis HOM05D000639 ORTHO05D003485 3.3e-06 56.2 77 45.5
TAR383G0926 Trochodendron aralioides HOM05D000639 ORTHO05D003485 3.3e-06 56.2 77 45.5
TAR624G0250 Trochodendron aralioides HOM05D000639 ORTHO05D003485 3.3e-06 56.2 77 46.8
Cfa003117 Carpinus fangiana HOM05D000639 ORTHO05D003485 4.3e-06 55.8 77 45.5
Sc14g0000780 Simmondsia chinensis HOM05D000639 ORTHO05D003485 4.3e-06 55.8 77 44.2
THA.LOC104820028 Tarenaya hassleriana HOM05D000639 ORTHO05D003485 4.3e-06 55.8 77 45.5
Aa31LG2G20970 Aethionema arabicum HOM05D000639 ORTHO05D003485 5.6e-06 55.5 77 44.2
AL7G22890 Arabidopsis lyrata HOM05D000639 ORTHO05D003485 5.6e-06 55.5 77 44.2
AT4G29510 Arabidopsis thaliana HOM05D000639 ORTHO05D003485 5.6e-06 55.5 77 44.2
BcaC09g51738 Brassica carinata HOM05D000639 ORTHO05D003485 5.6e-06 55.5 77 44.2
A01p08530 Brassica napus HOM05D000639 ORTHO05D003485 5.6e-06 55.5 77 44.2
C01p09960 Brassica napus HOM05D000639 ORTHO05D003485 5.6e-06 55.5 77 44.2
BolC1t00958H Brassica oleracea HOM05D000639 ORTHO05D003485 5.6e-06 55.5 77 44.2
BraA01t00802Z Brassica rapa HOM05D000639 ORTHO05D003485 5.6e-06 55.5 77 44.2
CARHR237340 Cardamine hirsuta HOM05D000639 ORTHO05D003485 5.6e-06 55.5 77 44.2
Cpa.g.sc7.249 Carica papaya HOM05D000639 ORTHO05D003485 5.6e-06 55.5 77 44.2
Thhalv10026945m.g Eutrema salsugineum HOM05D000639 ORTHO05D003485 5.6e-06 55.5 77 44.2
Lalb_Chr22g0349761 Lupinus albus HOM05D000639 ORTHO05D003485 5.6e-06 55.5 77 42.9
Manes.03G030932 Manihot esculenta HOM05D000639 ORTHO05D003485 5.6e-06 55.5 77 44.2
Manes.03G031196 Manihot esculenta HOM05D000639 ORTHO05D003485 5.6e-06 55.5 77 44.2
Sp7g27370 Schrenkiella parvula HOM05D000639 ORTHO05D003485 5.6e-06 55.5 77 44.2
Sopen07g015900 Solanum pennellii HOM05D000639 ORTHO05D003485 5.6e-06 55.5 77 44.2
PGSC0003DMG400008431 Solanum tuberosum HOM05D000639 ORTHO05D003485 5.6e-06 55.5 77 44.2
THA.LOC104814604 Tarenaya hassleriana HOM05D000639 ORTHO05D003485 5.6e-06 55.5 77 44.2
HPP92_009167 Vanilla planifolia HOM05D000639 ORTHO05D003485 5.6e-06 55.5 79 39.2
GSVIVG01015236001 Vitis vinifera HOM05D000639 ORTHO05D003485 5.6e-06 55.5 77 45.5
BcaC09g51739 Brassica carinata HOM05D000639 ORTHO05D003485 7.3e-06 55.1 77 42.9
A03p58960 Brassica napus HOM05D000639 ORTHO05D003485 7.3e-06 55.1 77 42.9
BolC7t46170H Brassica oleracea HOM05D000639 ORTHO05D003485 7.3e-06 55.1 77 42.9
BraA03t14956Z Brassica rapa HOM05D000639 ORTHO05D003485 7.3e-06 55.1 77 42.9
MBI01_g02266_MAGBIO Magnolia biondii HOM05D000639 ORTHO05D003485 7.3e-06 55.1 77 46.8
Mapoly0078s0032 Marchantia polymorpha HOM05D000639 ORTHO05D003485 7.3e-06 55.1 77 44.2
SHI02817 Sapria himalayana HOM05D000639 ORTHO05D003485 7.3e-06 55.1 76 44.7
A08p19630 Brassica napus HOM05D000639 ORTHO05D003485 9.5e-06 54.7 79 41.8
Thhalv10002025m.g Eutrema salsugineum HOM05D000639 ORTHO05D003485 9.5e-06 54.7 142 30.3
Solyc07g032240.3 Solanum lycopersicum HOM05D000639 ORTHO05D003485 9.5e-06 54.7 77 44.2
unitig_78.g29620 Utricularia gibba HOM05D000639 ORTHO05D003485 9.5e-06 54.7 72 47.2
VMungo0464G2028 Vigna mungo HOM05D000639 ORTHO05D003485 9.5e-06 54.7 77 42.9


User provided reference genes

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