Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008051 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 9.2e-34 146.4 76 100.0
Rhsim07G0124700 Rhododendron simsii HOM05D006477 ORTHO05D008311 3.9e-24 114.4 91 69.2
MELO3C020371.2 Cucumis melo HOM05D006477 ORTHO05D008311 5.0e-24 114.0 91 68.1
Rhsim07G0044200 Rhododendron simsii HOM05D006477 ORTHO05D008311 5.0e-24 114.0 91 69.2
Rhsim07G0044700 Rhododendron simsii HOM05D006477 ORTHO05D008311 5.0e-24 114.0 91 69.2
CSS0025225 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 6.6e-24 113.6 91 69.2
EL10Ac6g14607 Beta vulgaris HOM05D006477 ORTHO05D008311 1.1e-23 112.8 91 68.1
CSS0043287 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 1.5e-23 112.5 91 68.1
Cfa003675 Carpinus fangiana HOM05D006477 ORTHO05D008311 2.5e-23 111.7 91 68.1
vmacro13578 Vaccinium macrocarpon HOM05D006477 ORTHO05D008311 2.5e-23 111.7 91 68.1
FvH4_7g07070 Fragaria vesca HOM05D006477 ORTHO05D008311 5.6e-23 110.5 88 68.2
QL05p054895 Quercus lobata HOM05D006477 ORTHO05D008311 7.3e-23 110.2 90 66.7
QL05p056339 Quercus lobata HOM05D006477 ORTHO05D008311 7.3e-23 110.2 90 66.7
FAN10G2338 Fragaria x ananassa HOM05D006477 ORTHO05D008311 9.5e-23 109.8 88 68.2
Cc02_g26330 Coffea canephora HOM05D006477 ORTHO05D008311 1.6e-22 109.0 91 64.8
MBI04_g32195_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 1.6e-22 109.0 91 65.9
AUR62007820 Chenopodium quinoa HOM05D006477 ORTHO05D008311 2.1e-22 108.6 91 64.8
ClCG06G008130 Citrullus lanatus HOM05D006477 ORTHO05D008311 2.1e-22 108.6 91 62.6
Haze_15813 Corylus avellana HOM05D006477 ORTHO05D008311 2.1e-22 108.6 91 65.9
Hma1.2p1_0915F.1_g236330 Hydrangea macrophylla HOM05D006477 ORTHO05D008311 2.8e-22 108.2 91 67.0
RcHm_v2.0_Chr1g0337021 Rosa chinensis HOM05D006477 ORTHO05D008311 2.8e-22 108.2 91 64.8
GSVIVG01001179001 Vitis vinifera HOM05D006477 ORTHO05D008311 2.8e-22 108.2 91 65.9
Duzib128G0861 Durio zibethinus HOM05D006477 ORTHO05D008311 6.2e-22 107.1 91 64.8
Hma1.2p1_2755F.1_g327960 Hydrangea macrophylla HOM05D006477 ORTHO05D008311 8.1e-22 106.7 91 64.8
TWI59G0878 Tripterygium wilfordii HOM05D006477 ORTHO05D008311 8.1e-22 106.7 89 64.0
MD07G1076600 Malus domestica HOM05D006477 ORTHO05D008311 1.1e-21 106.3 91 62.6
Nitab4.5_0004594g0090 Nicotiana tabacum HOM05D006477 ORTHO05D008311 1.1e-21 106.3 90 63.3
Eucgr.E04248 Eucalyptus grandis HOM05D006477 ORTHO05D008311 1.4e-21 105.9 91 62.6
HanXRQChr17g0567251 Helianthus annuus HOM05D006477 ORTHO05D008311 1.4e-21 105.9 88 63.6
Prupe.2G097300 Prunus persica HOM05D006477 ORTHO05D008311 1.4e-21 105.9 91 63.7
Gohir.A12G270700 Gossypium hirsutum HOM05D006477 ORTHO05D008311 2.3e-21 105.1 91 62.6
Gohir.D12G271100 Gossypium hirsutum HOM05D006477 ORTHO05D008311 2.3e-21 105.1 91 62.6
Gorai.008G291500 Gossypium raimondii HOM05D006477 ORTHO05D008311 2.3e-21 105.1 91 62.6
MD02G1240300 Malus domestica HOM05D006477 ORTHO05D008311 2.3e-21 105.1 91 61.5
Thecc.07G155600 Theobroma cacao HOM05D006477 ORTHO05D008311 3.1e-21 104.8 91 64.8
HanXRQChr15g0495711 Helianthus annuus HOM05D006477 ORTHO05D008311 4.0e-21 104.4 91 61.5
HanXRQChr16g0522681 Helianthus annuus HOM05D006477 ORTHO05D008311 4.0e-21 104.4 91 61.5
MBI04_g32196_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 4.0e-21 104.4 89 62.9
FAN06G1803 Fragaria x ananassa HOM05D006477 ORTHO05D008311 5.2e-21 104.0 84 66.7
Nitab4.5_0004800g0020 Nicotiana tabacum HOM05D006477 ORTHO05D008311 5.2e-21 104.0 90 62.2
Manes.06G016700 Manihot esculenta HOM05D006477 ORTHO05D008311 6.8e-21 103.6 90 62.2
Manes.06G016750 Manihot esculenta HOM05D006477 ORTHO05D008311 6.8e-21 103.6 90 62.2
FAN03G3069 Fragaria x ananassa HOM05D006477 ORTHO05D029725 8.9e-21 103.2 84 65.5
Migut.J00830 Erythranthe guttata HOM05D006477 ORTHO05D008311 1.2e-20 102.8 91 58.2
Lsat_1_v5_gn_4_40501 Lactuca sativa HOM05D006477 ORTHO05D008311 1.2e-20 102.8 91 60.4
Actinidia05816 Actinidia chinensis HOM05D006477 ORTHO05D008311 1.5e-20 102.4 89 62.9
CiPaw.03G039600 Carya illinoinensis HOM05D006477 ORTHO05D008311 1.5e-20 102.4 86 64.0
Actinidia31748 Actinidia chinensis HOM05D006477 ORTHO05D008311 2.0e-20 102.1 89 64.0
PGR042G2475 Punica granatum HOM05D006477 ORTHO05D008311 3.4e-20 101.3 91 59.3
ATR0829G122 Amborella trichopoda HOM05D006477 ORTHO05D008311 4.4e-20 100.9 91 61.5
SGA_v2.0_scaffold120G32938 Striga asiatica HOM05D006477 ORTHO05D008311 4.4e-20 100.9 88 59.1
COL.COLO4_15215 Corchorus olitorius HOM05D006477 ORTHO05D008311 5.8e-20 100.5 91 61.5
COL.COLO4_37808 Corchorus olitorius HOM05D006477 ORTHO05D008311 5.8e-20 100.5 91 61.5
SalBow6G6803 Salvia bowleyana HOM05D006477 ORTHO05D008311 1.3e-19 99.4 88 59.1
ECA234G3546 Erigeron canadensis HOM05D006477 ORTHO05D008311 1.7e-19 99.0 91 58.2
Aqoxy7G00962 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 3.7e-19 97.8 89 58.4
ECA234G1029 Erigeron canadensis HOM05D006477 ORTHO05D008311 3.7e-19 97.8 91 58.2
PGSC0003DMG400001789 Solanum tuberosum HOM05D006477 ORTHO05D008311 3.7e-19 97.8 86 61.6
Potri.005G094100 Populus trichocarpa HOM05D006477 ORTHO05D008311 8.3e-19 96.7 86 59.3
Solyc01g081120.2 Solanum lycopersicum HOM05D006477 ORTHO05D008311 1.1e-18 96.3 86 60.5
Sopen01g032730 Solanum pennellii HOM05D006477 ORTHO05D008311 1.1e-18 96.3 86 60.5
Aqoxy6G02884 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 1.9e-18 95.5 89 56.2
CAN.G700.29 Capsicum annuum HOM05D006477 ORTHO05D008311 3.2e-18 94.7 86 57.0
HPP92_026480 Vanilla planifolia HOM05D006477 ORTHO05D008311 4.1e-18 94.4 86 57.0
QL05p056259 Quercus lobata HOM05D006477 ORTHO05D008311 5.4e-18 94.0 82 64.6
arahy.Tifrunner.gnm1.ann1.2E1B03 Arachis hypogaea HOM05D006477 ORTHO05D008311 9.2e-18 93.2 90 56.7
arahy.Tifrunner.gnm1.ann1.B2599V Arachis hypogaea HOM05D006477 ORTHO05D008311 9.2e-18 93.2 90 56.7
QL03p061357 Quercus lobata HOM05D006477 ORTHO05D008311 9.2e-18 93.2 86 61.6
Ciclev10023972m.g Citrus clementina HOM05D006477 ORTHO05D008311 1.2e-17 92.8 88 56.8
Glyma.12G115400 Glycine max HOM05D006477 ORTHO05D008311 1.3e-16 89.4 83 57.8
Glyma.06G291500 Glycine max HOM05D006477 ORTHO05D008311 1.7e-16 89.0 89 56.2
Phvul.010G094300 Phaseolus vulgaris HOM05D006477 ORTHO05D008311 1.7e-16 89.0 83 57.8
TPR.G24136 Trifolium pratense HOM05D006477 ORTHO05D008311 1.7e-16 89.0 86 54.7
Lj1g0022259 Lotus japonicus HOM05D006477 ORTHO05D008311 2.3e-16 88.6 90 54.4
unitig_27.g24761 Utricularia gibba HOM05D006477 ORTHO05D008311 2.3e-16 88.6 87 54.0
Aqoxy7G00965 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 3.0e-16 88.2 83 57.8
TPR.G19239 Trifolium pratense HOM05D006477 ORTHO05D008311 3.9e-16 87.8 86 53.5
Ca_18942_v3 Cicer arietinum L. HOM05D006477 ORTHO05D008311 5.1e-16 87.4 90 54.4
SHI34920 Sapria himalayana HOM05D006477 ORTHO05D008311 8.6e-16 86.7 85 56.5
SEGI_06535 Sequoiadendron giganteum HOM05D006477 ORTHO05D008311 1.1e-15 86.3 88 52.3
Cpa.g.sc53.139 Carica papaya HOM05D006477 ORTHO05D008311 1.5e-15 85.9 83 56.6
Lalb_Chr25g0285311 Lupinus albus HOM05D006477 ORTHO05D008311 1.5e-15 85.9 87 52.9
Aqoxy5G03392 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 3.3e-15 84.7 83 56.6
Phvul.011G119800 Phaseolus vulgaris HOM05D006477 ORTHO05D008311 3.3e-15 84.7 81 55.6
Sabra05G0077900 Salix brachista HOM05D006477 ORTHO05D008311 4.3e-15 84.3 82 56.1
CsaV3_2G011040 Cucumis sativus L. HOM05D006477 ORTHO05D008311 9.5e-15 83.2 74 62.2
Zm00001eb326860 Zea mays HOM05D006477 ORTHO05D008311 9.5e-15 83.2 84 51.2
Medtr4g078485 Medicago truncatula HOM05D006477 ORTHO05D008311 1.6e-14 82.4 82 56.1
Os02g0695700 Oryza sativa ssp. japonica HOM05D006477 ORTHO05D008311 1.6e-14 82.4 83 50.6
Rhsim13G0110700 Rhododendron simsii HOM05D006477 ORTHO05D008311 1.6e-14 82.4 48 87.5
Sc21g0001600 Simmondsia chinensis HOM05D006477 ORTHO05D008311 6.2e-14 80.5 48 81.2
Zm00001eb251360 Zea mays HOM05D006477 ORTHO05D008311 1.1e-13 79.7 84 48.8
Atru.chr3.3240 Acer truncatum HOM05D006477 ORTHO05D008311 1.4e-13 79.3 73 61.6
Pp3c3_2840 Physcomitrium patens HOM05D006477 ORTHO05D008311 2.4e-13 78.6 87 48.3
Peaxi162Scf00592g00428 Petunia axillaris HOM05D000001 ORTHO05D000003 3.1e-13 78.2 47 78.7
PSO017G7014 Papaver somniferum HOM05D006477 ORTHO05D008311 5.8e-12 73.9 71 57.7
THA.LOC104823802 Tarenaya hassleriana HOM05D006477 ORTHO05D008311 7.6e-12 73.6 83 48.2
Mapoly0009s0212 Marchantia polymorpha HOM05D006477 ORTHO05D008311 9.9e-12 73.2 86 47.7
Carub.0002s1025 Capsella rubella HOM05D006477 ORTHO05D008311 2.9e-11 71.6 82 48.8
AL2G19670 Arabidopsis lyrata HOM05D006477 ORTHO05D008311 6.4e-11 70.5 82 47.6
AT1G65032 Arabidopsis thaliana HOM05D006477 ORTHO05D008311 8.4e-11 70.1 82 47.6
Thhalv10019379m.g Eutrema salsugineum HOM05D006477 ORTHO05D008311 1.9e-10 68.9 82 46.3
Sp5g22520 Schrenkiella parvula HOM05D006477 ORTHO05D008311 1.9e-10 68.9 82 46.3
BcaNung05073 Brassica carinata HOM05D006477 ORTHO05D008311 3.2e-10 68.2 82 45.1
A07p34050 Brassica napus HOM05D006477 ORTHO05D008311 4.1e-10 67.8 82 43.9
C06p41870 Brassica napus HOM05D006477 ORTHO05D008311 4.1e-10 67.8 82 43.9
C06p42740 Brassica napus HOM05D006477 ORTHO05D008311 4.1e-10 67.8 82 43.9
C06p42790 Brassica napus HOM05D006477 ORTHO05D008311 4.1e-10 67.8 82 43.9
BolC6t39165H Brassica oleracea HOM05D006477 ORTHO05D008311 4.1e-10 67.8 82 43.9
BolC6t39243H Brassica oleracea HOM05D006477 ORTHO05D008311 4.1e-10 67.8 82 43.9
BraA07t31031Z Brassica rapa HOM05D006477 ORTHO05D008311 4.1e-10 67.8 82 43.9
Os04g0624900 Oryza sativa ssp. japonica HOM05D006477 ORTHO05D008311 4.1e-10 67.8 79 46.8
Thhalv10019610m.g Eutrema salsugineum HOM05D006477 ORTHO05D008311 2.1e-06 55.5 68 45.6
DCAR_024347 Daucus carota HOM05D006477 ORTHO05D008311 6.2e-06 53.9 60 51.7


User provided reference genes

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