Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 2223.4 1113 100.0
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1983.0 1128 88.8
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1981.1 1126 88.9
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1951.4 1126 87.2
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1874.8 1125 83.3
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1873.6 1124 83.0
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1869.7 1126 82.5
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1854.0 1120 82.6
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1852.4 1129 82.1
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 1851.3 1130 81.9
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 1850.5 1126 82.3
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1850.5 1126 82.4
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1850.5 1126 81.9
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 1849.3 1133 81.8
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 1847.8 1130 81.7
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 1838.5 1128 81.7
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1838.5 1124 82.7
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1837.0 1126 81.7
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1834.7 1124 81.2
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1833.2 1097 83.9
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1831.6 1151 79.3
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1831.2 1124 81.3
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1829.7 1126 80.8
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1825.4 1126 80.7
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1824.3 1130 81.2
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1823.5 1122 81.1
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1823.5 1317 73.7
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1822.4 1126 80.6
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1821.2 1129 80.4
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1815.8 1141 80.4
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1815.0 1126 80.7
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1814.3 1127 81.1
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1803.5 1141 79.9
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1798.9 1126 79.8
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1794.2 1126 79.8
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1793.9 1124 80.8
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1793.5 1127 79.2
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1792.7 1077 83.1
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1792.3 1146 80.5
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1790.4 1126 79.8
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1790.0 1126 79.6
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1789.6 1124 79.9
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1788.5 1124 79.4
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1786.2 1126 79.5
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 1785.8 1126 79.5
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1785.4 1187 76.7
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1784.2 1129 78.8
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1783.8 1126 78.8
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1783.8 1126 79.2
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 1782.3 1127 79.4
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 1781.9 1126 78.7
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 1780.8 1129 79.0
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1776.9 1163 78.1
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 1775.4 1126 78.1
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1771.5 1197 75.9
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1770.0 1128 78.4
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1760.7 1124 77.8
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1759.6 1124 78.2
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 1752.6 1080 81.6
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1751.5 1113 78.9
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1750.3 1124 77.8
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1749.2 1126 78.8
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 1739.9 1122 78.2
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1736.9 1125 78.0
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1734.2 1124 77.2
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 1730.7 1124 77.3
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1729.9 1119 78.0
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1722.2 1164 77.8
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1710.7 1128 76.5
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 1696.8 1037 81.7
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1694.9 1076 79.0
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 1691.8 1190 73.1
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1681.8 1121 75.6
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1671.8 1114 76.7
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 1656.7 1124 74.0
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1652.9 1124 73.9
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1647.9 1256 69.4
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1640.9 1124 73.6
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1634.4 1125 73.3
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 1628.6 1125 73.2
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1618.2 1128 72.4
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 1611.7 1124 72.5
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1610.9 1124 72.4
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1604.3 1143 71.1
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1596.3 1124 72.2
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 1595.1 1124 72.1
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1547.3 1155 68.7
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1523.1 953 80.2
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1515.7 1122 68.2
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1507.3 1122 67.4
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1505.7 1126 67.1
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1497.6 1162 68.1
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1496.9 1095 70.5
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 1493.8 1121 68.7
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1460.7 841 86.4
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1454.9 837 86.5
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1421.0 872 80.7
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1371.3 980 72.8
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1328.5 857 76.5
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1244.2 1129 60.2
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1200.3 783 76.9
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 0.0e+00 1191.0 821 71.7
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1147.9 688 83.9
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 0.0e+00 1088.6 1142 50.7
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 6.8e-303 1044.3 1529 42.6
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 2.5e-289 999.2 1124 48.6
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 7.6e-286 987.6 1153 47.2
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.1e-283 979.5 572 87.8
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 4.9e-269 931.8 1148 44.9
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 1.6e-267 926.8 532 87.6
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 1.9e-257 893.3 724 64.4
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 4.5e-254 882.1 668 65.7
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 2.2e-253 879.8 1382 38.1
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 8.7e-250 867.8 659 68.6
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 4.9e-208 729.2 604 63.4
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 2.9e-205 719.9 435 82.8
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 4.6e-198 696.0 450 76.9
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 2.5e-172 610.5 434 69.1
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.3e-168 598.2 590 52.2
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 3.9e-149 533.5 451 60.5
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 2.7e-134 484.2 378 70.1
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 1.7e-128 464.9 333 74.8
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 5.3e-122 443.4 312 72.8
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 3.2e-103 380.9 1111 29.1
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 6.8e-85 320.1 294 61.6
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 3.5e-81 307.8 781 30.2
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 6.0e-81 307.0 184 79.3
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 2.3e-80 305.1 311 52.7
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 4.3e-79 300.8 231 70.1
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 3.4e-76 291.2 191 72.8
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 1.1e-74 286.2 1456 21.5
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 6.2e-70 270.4 199 76.4
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 1.5e-63 249.2 185 64.3
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 1.3e-59 236.1 323 37.8
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 5.4e-58 230.7 212 59.9
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 2.2e-51 208.8 189 57.1
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 1.7e-48 199.1 212 56.6
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 2.1e-46 192.2 126 76.2
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 3.6e-46 191.4 212 53.8
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 2.4e-45 188.7 329 42.6
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 9.0e-45 186.8 252 42.9
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.3e-43 183.0 585 31.1
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.6e-38 166.0 193 53.4
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 4.6e-33 147.9 87 85.1
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 3.0e-32 145.2 724 23.6
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 1.1e-31 143.3 87 81.6
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 1.0e-27 130.2 85 77.6
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 4.9e-27 127.9 85 67.1
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 4.2e-26 124.8 162 46.9
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 1.3e-24 119.8 152 47.4
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 3.3e-23 115.2 65 83.1
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 7.4e-23 114.0 74 71.6
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 2.6e-20 105.5 67 70.1
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 2.1e-17 95.9 60 80.0
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 6.1e-17 94.4 80 65.0
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 5.1e-16 91.3 64 70.3
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 4.3e-15 88.2 88 55.7
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 1.3e-14 86.7 67 64.2
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.7e-14 86.3 43 93.0
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 3.7e-14 85.1 59 71.2
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 8.2e-14 84.0 56 71.4
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 8.2e-14 84.0 45 84.4
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 8.5e-11 73.9 56 62.5
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 3.2e-10 72.0 49 67.3
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 7.2e-10 70.9 48 70.8
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 9.4e-10 70.5 34 82.4
arahy.Tifrunner.gnm1.ann1.19V8U8 Arachis hypogaea HOM05D000005 ORTHO05D000012 1.4e-08 66.6 71 50.7
arahy.Tifrunner.gnm1.ann1.RG0L3L Arachis hypogaea HOM05D004297 ORTHO05D085181 8.8e-08 63.9 69 43.5
Rhsim06G0128800 Rhododendron simsii HOM05D000263 ORTHO05D000213 2.6e-07 62.4 42 69.0
Nn1g01614 Nelumbo nucifera HOM05D004297 ORTHO05D005213 4.4e-07 61.6 41 65.9
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 5.7e-07 61.2 34 76.5


User provided reference genes

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