Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008003 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 2.5e-111 405.6 227 100.0
CSS0024757 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 7.6e-100 367.5 227 93.8
Actinidia02522 Actinidia chinensis HOM05D000086 ORTHO05D002912 1.1e-21 107.8 106 59.4
Dinv38814 Davidia involucrata HOM05D000086 ORTHO05D002912 3.1e-21 106.3 106 61.3
Cpa.g.sc15.6 Carica papaya HOM05D000086 ORTHO05D002912 2.9e-19 99.8 106 54.7
DCAR_030429 Daucus carota HOM05D000086 ORTHO05D002912 2.9e-19 99.8 106 53.8
GSVIVG01019592001 Vitis vinifera HOM05D000086 ORTHO05D002912 3.8e-19 99.4 106 59.4
Dinv37502 Davidia involucrata HOM05D000086 ORTHO05D002912 5.0e-19 99.0 146 45.9
Eucgr.D01770 Eucalyptus grandis HOM05D000086 ORTHO05D002912 8.6e-19 98.2 108 62.0
Haze_09101 Corylus avellana HOM05D000086 ORTHO05D002912 1.1e-18 97.8 106 55.7
Potri.001G088400 Populus trichocarpa HOM05D000086 ORTHO05D002912 2.5e-18 96.7 109 52.3
Thecc.08G165900 Theobroma cacao HOM05D000086 ORTHO05D002912 7.2e-18 95.1 107 50.5
Manes.02G007100 Manihot esculenta HOM05D000086 ORTHO05D002912 1.6e-17 94.0 106 50.9
Actinidia27309 Actinidia chinensis HOM05D000086 ORTHO05D002912 3.6e-17 92.8 103 53.4
RcHm_v2.0_Chr7g0186121 Rosa chinensis HOM05D000086 ORTHO05D002912 4.7e-17 92.4 106 58.5
Duzib116G0331 Durio zibethinus HOM05D000086 ORTHO05D002912 6.1e-17 92.0 103 52.4
Ciclev10024464m.g Citrus clementina HOM05D000086 ORTHO05D002912 1.0e-16 91.3 107 51.4
Lj2A163T68 Lonicera japonica HOM05D000086 ORTHO05D002912 1.8e-16 90.5 104 53.8
Prupe.5G124100 Prunus persica HOM05D000086 ORTHO05D002912 1.8e-16 90.5 108 51.9
Nn1g00280 Nelumbo nucifera HOM05D000086 ORTHO05D002912 4.0e-16 89.4 106 49.1
PGR031G3866 Punica granatum HOM05D000086 ORTHO05D002912 4.0e-16 89.4 104 51.9
CSS0041085 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 5.2e-16 89.0 106 48.1
Lsat_1_v5_gn_6_71661 Lactuca sativa HOM05D000086 ORTHO05D002912 5.2e-16 89.0 106 50.9
Manes.01G052600 Manihot esculenta HOM05D000086 ORTHO05D002912 5.2e-16 89.0 106 49.1
CANSAT21G1707 Cannabis sativa HOM05D000086 ORTHO05D002912 1.2e-15 87.8 109 47.7
ECA233G6093 Erigeron canadensis HOM05D000086 ORTHO05D002912 1.5e-15 87.4 106 48.1
Sabra01G0064700 Salix brachista HOM05D000086 ORTHO05D002912 1.5e-15 87.4 106 50.9
Nitab4.5_0002367g0040 Nicotiana tabacum HOM05D000086 ORTHO05D002912 2.0e-15 87.0 106 52.8
COL.COLO4_25065 Corchorus olitorius HOM05D000086 ORTHO05D002912 2.6e-15 86.7 103 51.5
CSS0026020 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 4.4e-15 85.9 104 48.1
FvH4_5g11670 Fragaria vesca HOM05D000086 ORTHO05D002912 4.4e-15 85.9 106 51.9
FAN18G1358 Fragaria x ananassa HOM05D000086 ORTHO05D002912 4.4e-15 85.9 106 51.9
FAN18G4267 Fragaria x ananassa HOM05D000086 ORTHO05D002912 4.4e-15 85.9 106 51.9
Peaxi162Scf00074g00527 Petunia axillaris HOM05D000086 ORTHO05D002912 4.4e-15 85.9 106 53.8
Aqoxy7G00064 Aquilegia oxysepala HOM05D000086 ORTHO05D002912 7.5e-15 85.1 107 56.1
Lj6A699T66 Lonicera japonica HOM05D000086 ORTHO05D002912 7.5e-15 85.1 109 58.7
MBI06_g10868_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D002912 7.5e-15 85.1 106 47.2
QL02p029662 Quercus lobata HOM05D000086 ORTHO05D002912 7.5e-15 85.1 106 50.9
AUR62019872 Chenopodium quinoa HOM05D000086 ORTHO05D002912 2.2e-14 83.6 107 49.5
MD06G1111300 Malus domestica HOM05D000086 ORTHO05D002912 2.2e-14 83.6 106 49.1
PSO135G0157 Papaver somniferum HOM05D000086 ORTHO05D002912 2.2e-14 83.6 111 45.9
PSO384G4716 Papaver somniferum HOM05D000086 ORTHO05D002912 2.2e-14 83.6 111 45.9
Potri.003G142600 Populus trichocarpa HOM05D000086 ORTHO05D002912 2.9e-14 83.2 106 49.1
Atru.chr9.1938 Acer truncatum HOM05D000086 ORTHO05D002912 3.7e-14 82.8 109 65.1
Aa31LG6G7220 Aethionema arabicum HOM05D000086 ORTHO05D002912 3.7e-14 82.8 102 51.0
Gorai.004G266400 Gossypium raimondii HOM05D000086 ORTHO05D002912 4.9e-14 82.4 112 48.2
FAN08G2033 Fragaria x ananassa HOM05D000086 ORTHO05D002912 6.4e-14 82.0 98 55.1
Lj4g0025211 Lotus japonicus HOM05D000086 ORTHO05D002912 6.4e-14 82.0 111 47.7
CSS0039652 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 8.3e-14 81.6 104 48.1
FAN13G2692 Fragaria x ananassa HOM05D000086 ORTHO05D002912 1.1e-13 81.3 99 52.5
MBI07_g24778_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D002912 1.4e-13 80.9 106 47.2
A01p15280 Brassica napus HOM05D000086 ORTHO05D002912 1.8e-13 80.5 102 48.0
FAN04G1292 Fragaria x ananassa HOM05D000086 ORTHO05D002912 1.8e-13 80.5 99 55.6
Gohir.D08G249800 Gossypium hirsutum HOM05D000086 ORTHO05D002912 1.8e-13 80.5 106 47.2
Sp7g21970 Schrenkiella parvula HOM05D000086 ORTHO05D002912 1.8e-13 80.5 103 50.5
Glyma.05G218700 Glycine max HOM05D000086 ORTHO05D002912 2.4e-13 80.1 107 45.8
Gohir.A08G229500 Gossypium hirsutum HOM05D000086 ORTHO05D002912 2.4e-13 80.1 113 46.9
EL10Ac5g12948 Beta vulgaris HOM05D000086 ORTHO05D002912 4.1e-13 79.3 105 46.7
Glyma.20G066300 Glycine max HOM05D000086 ORTHO05D002912 5.4e-13 79.0 100 52.0
Glyma.08G024800 Glycine max HOM05D000086 ORTHO05D002912 7.0e-13 78.6 108 46.3
Lj6g0016186 Lotus japonicus HOM05D000086 ORTHO05D002912 9.2e-13 78.2 100 47.0
Solyc08g082680.3 Solanum lycopersicum HOM05D000086 ORTHO05D002912 9.2e-13 78.2 108 49.1
Sopen08g030900 Solanum pennellii HOM05D000086 ORTHO05D002912 9.2e-13 78.2 108 49.1
PGSC0003DMG400012137 Solanum tuberosum HOM05D000086 ORTHO05D002912 9.2e-13 78.2 108 50.0
Oeu022695.1 Olea europaea HOM05D000086 ORTHO05D002912 1.2e-12 77.8 99 47.5
CiPaw.12G080900 Carya illinoinensis HOM05D000086 ORTHO05D002912 1.6e-12 77.4 107 48.6
Thhalv10026391m.g Eutrema salsugineum HOM05D000086 ORTHO05D002912 2.7e-12 76.6 102 45.1
Glyma.13G002800 Glycine max HOM05D000086 ORTHO05D002912 2.7e-12 76.6 100 46.0
MSTRG.10181 Avicennia marina HOM05D002688 ORTHO05D002911 3.5e-12 76.3 104 47.1
BcaNung04249 Brassica carinata HOM05D000086 ORTHO05D002912 3.5e-12 76.3 102 47.1
C07p53290 Brassica napus HOM05D000086 ORTHO05D002912 3.5e-12 76.3 102 47.1
BolC7t45824H Brassica oleracea HOM05D000086 ORTHO05D002912 3.5e-12 76.3 102 47.1
MD14G1132500 Malus domestica HOM05D000086 ORTHO05D002912 4.6e-12 75.9 109 45.9
AL7G29290 Arabidopsis lyrata HOM05D000086 ORTHO05D002912 5.9e-12 75.5 102 45.1
AT4G24015 Arabidopsis thaliana HOM05D000086 ORTHO05D002912 5.9e-12 75.5 102 45.1
arahy.Tifrunner.gnm1.ann1.1IN0XH Arachis hypogaea HOM05D000086 ORTHO05D002912 5.9e-12 75.5 112 45.5
BcaNung01107 Brassica carinata HOM05D000086 ORTHO05D002912 5.9e-12 75.5 102 45.1
BcaC09g50923 Brassica carinata HOM05D000086 ORTHO05D002912 7.8e-12 75.1 103 51.5
C01p19210 Brassica napus HOM05D000086 ORTHO05D002912 7.8e-12 75.1 103 51.5
BolC1t01848H Brassica oleracea HOM05D000086 ORTHO05D002912 7.8e-12 75.1 103 51.5
BraA01t01471Z Brassica rapa HOM05D000086 ORTHO05D002912 1.0e-11 74.7 103 51.5
Cc08_g16350 Coffea canephora HOM05D000086 ORTHO05D002912 1.0e-11 74.7 106 50.0
Sed0026122 Sechium edule HOM05D000086 ORTHO05D002912 1.0e-11 74.7 110 62.7
Oeu030887.1 Olea europaea HOM05D000086 ORTHO05D002912 1.3e-11 74.3 103 43.7
Sed0016681 Sechium edule HOM05D000086 ORTHO05D002912 1.3e-11 74.3 109 55.0
A03p54910 Brassica napus HOM05D000086 ORTHO05D002912 2.3e-11 73.6 102 49.0
BraA03t14556Z Brassica rapa HOM05D000086 ORTHO05D002912 2.3e-11 73.6 102 46.1
CARHR231420 Cardamine hirsuta HOM05D000086 ORTHO05D002912 2.3e-11 73.6 102 45.1
Lalb_Chr16g0390721 Lupinus albus HOM05D000086 ORTHO05D002912 2.3e-11 73.6 110 44.5
VMungo0540G0071 Vigna mungo HOM05D000086 ORTHO05D002912 2.3e-11 73.6 101 51.5
Phvul.002G300500 Phaseolus vulgaris HOM05D000086 ORTHO05D002912 3.0e-11 73.2 107 42.1
Lalb_Chr09g0332221 Lupinus albus HOM05D000086 ORTHO05D002912 3.9e-11 72.8 110 44.5
ClCG01G001780 Citrullus lanatus HOM05D000086 ORTHO05D002912 5.0e-11 72.4 111 62.2
arahy.Tifrunner.gnm1.ann1.60J8GE Arachis hypogaea HOM05D000086 ORTHO05D002912 6.6e-11 72.0 112 44.6
CiPaw.11G117600 Carya illinoinensis HOM05D000086 ORTHO05D002912 8.6e-11 71.6 106 62.3
CSS0007727 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 1.1e-10 71.2 107 51.4
VMungo0251G0743 Vigna mungo HOM05D000086 ORTHO05D002912 1.1e-10 71.2 107 42.1
Lsat_1_v5_gn_6_9501 Lactuca sativa HOM05D000086 ORTHO05D002912 1.5e-10 70.9 99 53.5
CSS0003750 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 1.9e-10 70.5 107 44.9
Hma1.2p1_0440F.1_g153540 Hydrangea macrophylla HOM05D000086 ORTHO05D002912 1.9e-10 70.5 105 45.7
Psat5g108400 Pisum sativum HOM05D000086 ORTHO05D002912 2.5e-10 70.1 100 43.0
Medtr3g081030 Medicago truncatula HOM05D000086 ORTHO05D002912 4.3e-10 69.3 105 43.8
HanXRQChr10g0316891 Helianthus annuus HOM05D000086 ORTHO05D002912 7.3e-10 68.6 97 44.3
Nn3g18960 Nelumbo nucifera HOM05D000086 ORTHO05D002912 9.5e-10 68.2 95 44.2
HanXRQChr07g0190771 Helianthus annuus HOM05D000086 ORTHO05D002912 1.2e-09 67.8 96 46.9
Lalb_Chr05g0223981 Lupinus albus HOM05D000086 ORTHO05D002912 1.6e-09 67.4 110 44.5
SGA_v2.0_scaffold64G22042 Striga asiatica HOM05D000086 ORTHO05D002912 2.1e-09 67.0 99 44.4
MELO3C005760.2 Cucumis melo HOM05D000086 ORTHO05D002912 2.8e-09 66.6 111 60.4
CsaV3_5G001920 Cucumis sativus L. HOM05D000086 ORTHO05D002912 2.8e-09 66.6 111 60.4
Phvul.006G000700 Phaseolus vulgaris HOM05D000086 ORTHO05D002912 3.6e-09 66.2 102 50.0
TPR.G33602 Trifolium pratense HOM05D000086 ORTHO05D002912 4.7e-09 65.9 103 41.7
Medtr4g030070 Medicago truncatula HOM05D000086 ORTHO05D002912 4.4e-07 59.3 88 35.2
Migut.G00009 Erythranthe guttata HOM05D000086 ORTHO05D002912 1.3e-06 57.8 98 60.2
TPR.G4399 Trifolium pratense HOM05D000086 ORTHO05D002912 1.3e-06 57.8 105 34.3
Phvul.011G215400 Phaseolus vulgaris HOM05D000086 ORTHO05D002912 2.2e-06 57.0 88 37.5
Solyc06g064440.3 Solanum lycopersicum HOM05D000086 ORTHO05D002912 2.9e-06 56.6 90 40.0
GSVIVG01037142001 Vitis vinifera HOM05D000086 ORTHO05D002912 2.9e-06 56.6 104 33.7
Dinv29526 Davidia involucrata HOM05D005190 ORTHO05D006183 3.7e-06 56.2 47 63.8
VMungo1127G1869 Vigna mungo HOM05D000086 ORTHO05D002912 3.7e-06 56.2 88 36.4
PGSC0003DMG400033135 Solanum tuberosum HOM05D000086 ORTHO05D002912 4.9e-06 55.8 90 40.0


User provided reference genes

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