Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 1.4e-188 662.9 363 100.0
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 9.2e-124 447.6 338 76.3
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.2e-123 447.2 333 77.2
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 3.9e-122 442.2 331 77.0
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 7.3e-121 438.0 331 74.9
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 6.2e-112 408.3 333 72.7
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 3.1e-111 406.0 334 70.4
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 1.9e-108 396.7 311 72.3
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 1.3e-106 390.6 337 70.0
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 6.6e-106 388.3 341 69.2
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 1.6e-104 383.6 333 69.4
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 1.1e-100 370.9 333 68.2
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 1.5e-97 360.5 354 61.9
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 2.1e-96 356.7 339 65.2
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 4.8e-96 355.5 330 64.2
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 1.1e-95 354.4 327 62.7
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 1.8e-95 353.6 331 64.7
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 6.9e-95 351.7 332 64.5
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 2.0e-94 350.1 334 62.9
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 4.5e-94 349.0 331 65.0
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 1.3e-93 347.4 347 61.1
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 2.2e-93 346.7 339 63.4
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 1.6e-91 340.5 339 64.0
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 1.3e-90 337.4 334 61.4
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 5.6e-89 332.0 337 60.8
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 1.8e-87 327.0 337 59.9
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.8e-87 327.0 335 60.3
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 2.4e-87 326.6 329 58.7
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 2.0e-86 323.6 316 63.0
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 7.6e-86 321.6 335 59.4
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 4.9e-85 318.9 330 57.0
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.1e-84 317.8 341 58.7
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 7.9e-83 311.6 340 58.8
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 8.7e-82 308.1 337 59.3
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 1.5e-81 307.4 337 57.9
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 1.3e-80 304.3 330 56.4
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 4.0e-79 299.3 343 56.3
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 9.0e-79 298.1 342 55.8
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 1.2e-78 297.7 333 56.5
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 1.5e-78 297.4 349 56.4
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 3.4e-78 296.2 333 58.6
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 7.6e-78 295.0 289 60.9
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.0e-77 294.7 336 54.5
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 3.8e-77 292.7 340 55.9
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 4.9e-77 292.4 335 56.1
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 6.5e-77 292.0 329 55.6
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 1.1e-76 291.2 335 56.4
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 9.3e-76 288.1 344 56.4
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 9.3e-76 288.1 356 54.5
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 2.7e-75 286.6 340 55.6
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 3.5e-75 286.2 324 56.5
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 4.6e-75 285.8 345 54.8
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 1.3e-74 284.3 324 56.2
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 1.3e-74 284.3 325 54.8
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.8e-74 283.9 320 57.8
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 3.9e-74 282.7 332 55.7
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 8.7e-74 281.6 327 55.0
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 1.1e-73 281.2 343 54.2
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 2.5e-73 280.0 311 55.6
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 2.5e-73 280.0 339 53.7
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 7.4e-73 278.5 333 54.7
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 1.6e-72 277.3 356 52.2
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 2.2e-72 276.9 340 57.1
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 4.8e-72 275.8 313 57.2
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 4.8e-72 275.8 324 55.6
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 1.4e-71 274.2 343 54.8
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 1.4e-71 274.2 270 61.9
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 3.1e-71 273.1 341 56.6
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 6.9e-71 271.9 342 56.4
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 6.9e-71 271.9 378 48.9
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 6.9e-71 271.9 323 56.0
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 9.0e-71 271.6 343 54.2
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 2.6e-70 270.0 343 52.2
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 5.9e-70 268.9 334 53.9
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 1.0e-69 268.1 341 56.0
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 1.0e-69 268.1 355 51.5
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 1.7e-69 267.3 373 49.6
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 2.9e-69 266.5 353 53.0
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 1.4e-68 264.2 334 53.3
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 1.9e-68 263.8 328 51.8
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 3.2e-68 263.1 297 52.9
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 9.4e-68 261.5 331 51.4
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 4.6e-67 259.2 235 64.3
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 1.0e-66 258.1 327 50.2
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 1.4e-66 257.7 305 56.4
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 1.4e-66 257.7 319 56.1
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 5.1e-66 255.8 337 52.8
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 5.1e-66 255.8 331 51.4
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 6.7e-66 255.4 345 50.7
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 5.7e-65 252.3 384 47.4
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 5.7e-65 252.3 330 50.3
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 7.4e-65 251.9 362 48.9
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 3.7e-64 249.6 340 50.0
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 6.9e-63 245.4 330 50.9
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 6.9e-63 245.4 357 47.6
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 1.5e-62 244.2 350 50.6
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 1.5e-62 244.2 367 47.7
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 2.0e-62 243.8 322 53.4
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 2.6e-62 243.4 357 49.9
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 4.5e-62 242.7 335 52.2
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 5.9e-62 242.3 332 49.1
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 1.0e-61 241.5 354 47.5
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 1.3e-61 241.1 334 52.7
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 3.2e-60 236.5 318 49.7
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 9.4e-60 235.0 322 52.8
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 8.8e-58 228.4 343 47.5
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 1.1e-57 228.0 349 47.0
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 3.3e-57 226.5 294 52.0
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 4.4e-57 226.1 247 56.7
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 4.8e-56 222.6 337 47.5
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 9.1e-55 218.4 329 45.9
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 1.2e-54 218.0 289 52.2
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 7.2e-52 208.8 325 45.8
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 2.7e-51 206.8 350 43.4
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 4.7e-51 206.1 312 43.9
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 1.4e-50 204.5 329 43.8
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 2.6e-49 200.3 318 45.9
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 1.7e-48 197.6 335 43.3
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 3.7e-48 196.4 327 45.6
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 3.7e-48 196.4 345 43.2
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 8.2e-48 195.3 363 42.4
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 2.4e-47 193.7 365 42.5
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 3.1e-47 193.4 317 43.8
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 9.1e-47 191.8 346 41.9
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 2.0e-46 190.7 368 40.5
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 1.7e-45 187.6 262 49.2
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 1.5e-44 184.5 371 40.2
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 2.5e-44 183.7 363 41.9
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 2.5e-44 183.7 363 41.9
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 2.5e-44 183.7 363 41.9
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 2.3e-42 177.2 366 41.8
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 4.0e-26 123.2 180 47.8
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 7.5e-25 119.0 351 32.8
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 1.2e-11 75.1 205 30.7
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 3.6e-11 73.6 196 32.7
Solyc11g069210.2 Solanum lycopersicum HOM05D008415 ORTHO05D010601 3.1e-10 70.5 192 30.7
Sopen11g027940 Solanum pennellii HOM05D008415 ORTHO05D010601 5.2e-10 69.7 192 31.8
PGSC0003DMG400008064 Solanum tuberosum HOM05D008415 ORTHO05D010601 5.2e-10 69.7 192 30.2
CsaV3_6G021730 Cucumis sativus L. HOM05D008415 ORTHO05D010601 3.4e-09 67.0 150 30.0
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 3.4e-09 67.0 188 29.8
TAR375G0593 Trochodendron aralioides HOM05D005535 ORTHO05D006753 3.4e-09 67.0 67 62.7
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 4.4e-09 66.6 112 34.8
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 5.8e-09 66.2 188 31.9
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 1.3e-08 65.1 221 32.6
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 2.2e-08 64.3 139 33.1
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 2.9e-08 63.9 147 31.3
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 2.9e-08 63.9 114 36.8
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 2.9e-08 63.9 139 33.1
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 3.7e-08 63.5 83 36.1
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 4.9e-08 63.2 225 29.3
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 6.4e-08 62.8 114 35.1
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 6.4e-08 62.8 187 29.4
MSTRG.18650 Avicennia marina HOM05D008415 ORTHO05D010601 8.3e-08 62.4 131 32.8
Medtr4g060050 Medicago truncatula HOM05D008415 ORTHO05D010601 1.4e-07 61.6 56 50.0
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 1.9e-07 61.2 94 36.2
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 1.9e-07 61.2 200 31.0
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 2.4e-07 60.8 61 44.3
Rhsim01G0218700 Rhododendron simsii HOM05D008415 ORTHO05D010601 2.4e-07 60.8 93 35.5
MD01G1041800 Malus domestica HOM05D005535 ORTHO05D006753 3.2e-07 60.5 36 80.6
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 3.2e-07 60.5 206 27.7
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 3.2e-07 60.5 154 31.2
Aqoxy2G01080 Aquilegia oxysepala HOM05D008415 ORTHO05D010601 7.0e-07 59.3 119 35.3
Lalb_Chr19g0137361 Lupinus albus HOM05D008415 ORTHO05D010601 9.2e-07 58.9 118 32.2
arahy.Tifrunner.gnm1.ann1.C7LIDW Arachis hypogaea HOM05D008415 ORTHO05D010601 1.2e-06 58.5 144 30.6
CARHR276330 Cardamine hirsuta HOM05D005535 ORTHO05D018759 1.2e-06 58.5 185 34.1
VMungo1127G1728 Vigna mungo HOM05D008415 ORTHO05D010601 1.2e-06 58.5 105 31.4
Cc01_g11390 Coffea canephora HOM05D008415 ORTHO05D010601 2.1e-06 57.8 123 31.7
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 2.7e-06 57.4 118 31.4
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 4.6e-06 56.6 218 28.0
TAR633G1891 Trochodendron aralioides HOM05D008415 ORTHO05D010601 7.8e-06 55.8 235 27.2


User provided reference genes

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