Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007994 Camellia sinensis var. sinensis HOM05D004307 ORTHO05D005068 1.8e-110 402.5 195 100.0
CSS0019674 Camellia sinensis var. sinensis HOM05D004307 ORTHO05D005068 7.4e-96 354.0 242 76.0
CSS0043383 Camellia sinensis var. sinensis HOM05D004307 ORTHO05D005068 5.0e-84 314.7 162 96.9
Rhsim04G0099800 Rhododendron simsii HOM05D004307 ORTHO05D005068 3.2e-83 312.0 239 66.9
Actinidia38565 Actinidia chinensis HOM05D004307 ORTHO05D005068 2.1e-82 309.3 239 66.5
Atru.chr1.1037 Acer truncatum HOM05D004307 ORTHO05D005068 2.7e-82 308.9 242 65.7
CSS0046203 Camellia sinensis var. sinensis HOM05D004307 ORTHO05D005068 3.6e-82 308.5 162 94.4
GSVIVG01033325001 Vitis vinifera HOM05D004307 ORTHO05D005068 2.0e-80 302.8 240 65.0
Dinv18082 Davidia involucrata HOM05D004307 ORTHO05D005068 2.6e-80 302.4 240 65.0
Dinv18083 Davidia involucrata HOM05D004307 ORTHO05D005068 4.4e-80 301.6 240 64.6
Nn2g15471 Nelumbo nucifera HOM05D004307 ORTHO05D005068 2.2e-79 299.3 239 64.4
Hma1.2p1_0247F.1_g101890 Hydrangea macrophylla HOM05D004307 ORTHO05D005068 2.8e-79 298.9 239 64.9
TAR623G0503 Trochodendron aralioides HOM05D004307 ORTHO05D005068 1.8e-78 296.2 242 64.0
CiPaw.09G035400 Carya illinoinensis HOM05D004307 ORTHO05D005068 2.4e-78 295.8 242 63.6
QL07p021650 Quercus lobata HOM05D004307 ORTHO05D005068 1.2e-77 293.5 241 62.7
COL.COLO4_28671 Corchorus olitorius HOM05D004307 ORTHO05D005068 3.5e-77 292.0 240 60.4
CSS0003922 Camellia sinensis var. sinensis HOM05D004307 ORTHO05D005068 4.5e-77 291.6 171 88.3
Duzib106G0148 Durio zibethinus HOM05D004307 ORTHO05D005068 4.5e-77 291.6 238 62.6
Nitab4.5_0004660g0040 Nicotiana tabacum HOM05D004307 ORTHO05D005068 4.5e-77 291.6 241 62.2
Thecc.05G161800 Theobroma cacao HOM05D004307 ORTHO05D005068 1.7e-76 289.7 240 61.2
Cpa.g.sc92.12 Carica papaya HOM05D004307 ORTHO05D005068 2.3e-76 289.3 242 61.6
Cpa.g.sc92.13 Carica papaya HOM05D003478 ORTHO05D004196 2.3e-76 289.3 242 61.6
MD12G1066900 Malus domestica HOM05D004307 ORTHO05D005068 2.9e-76 288.9 242 61.6
Phvul.007G255200 Phaseolus vulgaris HOM05D004307 ORTHO05D005068 3.8e-76 288.5 242 60.7
CAN.G77.1 Capsicum annuum HOM05D004307 ORTHO05D005068 8.6e-76 287.3 242 60.7
TWI74G0086 Tripterygium wilfordii HOM05D004307 ORTHO05D005068 8.6e-76 287.3 237 61.2
Glyma.02G181500 Glycine max HOM05D004307 ORTHO05D005068 2.5e-75 285.8 242 60.7
Glyma.10G099700 Glycine max HOM05D004307 ORTHO05D005068 2.5e-75 285.8 242 61.2
MD14G1067400 Malus domestica HOM05D004307 ORTHO05D005068 2.5e-75 285.8 242 60.7
RcHm_v2.0_Chr3g0481191 Rosa chinensis HOM05D004307 ORTHO05D005068 2.5e-75 285.8 242 62.0
Gorai.006G138400 Gossypium raimondii HOM05D004307 ORTHO05D005068 5.5e-75 284.6 239 60.3
Ca_26681_v3 Cicer arietinum L. HOM05D004307 ORTHO05D005068 7.2e-75 284.3 242 60.3
PGR004G0326 Punica granatum HOM05D004307 ORTHO05D005068 7.2e-75 284.3 240 60.4
MSTRG.6447 Avicennia marina HOM05D004307 ORTHO05D005068 9.5e-75 283.9 240 59.6
CiPaw.10G031500 Carya illinoinensis HOM05D004307 ORTHO05D005068 1.2e-74 283.5 242 61.2
Nitab4.5_0002220g0030 Nicotiana tabacum HOM05D004307 ORTHO05D005068 1.6e-74 283.1 239 61.5
Gohir.D09G120900 Gossypium hirsutum HOM05D004307 ORTHO05D005068 2.1e-74 282.7 239 59.8
Potri.006G054800 Populus trichocarpa HOM05D004307 ORTHO05D005068 2.1e-74 282.7 242 61.2
Psat6g126960 Pisum sativum HOM05D004307 ORTHO05D005068 2.8e-74 282.3 240 59.6
PGSC0003DMG400019789 Solanum tuberosum HOM05D004307 ORTHO05D005068 2.8e-74 282.3 242 60.7
FAN02G1024 Fragaria x ananassa HOM05D004307 ORTHO05D005068 3.6e-74 282.0 239 61.9
TWI77G0335 Tripterygium wilfordii HOM05D004307 ORTHO05D005068 4.7e-74 281.6 242 59.1
Eucgr.A02396 Eucalyptus grandis HOM05D004307 ORTHO05D005068 6.1e-74 281.2 235 60.4
TPR.G29928 Trifolium pratense HOM05D004307 ORTHO05D005068 6.1e-74 281.2 240 59.6
FAN05G2241 Fragaria x ananassa HOM05D004307 ORTHO05D005068 8.0e-74 280.8 239 61.5
Medtr1g052730 Medicago truncatula HOM05D004307 ORTHO05D005068 1.4e-73 280.0 240 59.2
Lalb_Chr02g0156371 Lupinus albus HOM05D004307 ORTHO05D005068 1.8e-73 279.6 242 59.1
Ciclev10004353m.g Citrus clementina HOM05D004307 ORTHO05D005068 3.0e-73 278.9 237 59.1
Cc06_g16610 Coffea canephora HOM05D004307 ORTHO05D005068 3.0e-73 278.9 240 61.2
arahy.Tifrunner.gnm1.ann1.6VN1VE Arachis hypogaea HOM05D004307 ORTHO05D005068 5.2e-73 278.1 242 58.3
A09p50490 Brassica napus HOM05D004307 ORTHO05D005068 6.8e-73 277.7 243 58.4
BraA09t40500Z Brassica rapa HOM05D004307 ORTHO05D005068 6.8e-73 277.7 243 58.4
Peaxi162Scf00650g00226 Petunia axillaris HOM05D004307 ORTHO05D005068 6.8e-73 277.7 242 59.9
Thhalv10005794m.g Eutrema salsugineum HOM05D004307 ORTHO05D005068 8.8e-73 277.3 243 58.4
Gohir.A09G124100 Gossypium hirsutum HOM05D004307 ORTHO05D005068 8.8e-73 277.3 239 59.0
BcaC07g40358 Brassica carinata HOM05D004307 ORTHO05D005068 1.2e-72 276.9 243 58.8
Sed0006443 Sechium edule HOM05D004307 ORTHO05D005068 1.2e-72 276.9 242 57.9
Aqoxy1G00236 Aquilegia oxysepala HOM05D004307 ORTHO05D005068 2.6e-72 275.8 239 59.8
THA.LOC104802308 Tarenaya hassleriana HOM05D004307 ORTHO05D005068 4.4e-72 275.0 242 55.8
C08p33190 Brassica napus HOM05D004307 ORTHO05D005068 5.7e-72 274.6 243 58.0
BolC8t50921H Brassica oleracea HOM05D004307 ORTHO05D005068 5.7e-72 274.6 243 58.0
MELO3C009666.2 Cucumis melo HOM05D004307 ORTHO05D005068 7.5e-72 274.2 242 57.0
Solyc03g063750.3 Solanum lycopersicum HOM05D004307 ORTHO05D005068 7.5e-72 274.2 242 59.9
Sopen03g017080 Solanum pennellii HOM05D004307 ORTHO05D005068 7.5e-72 274.2 242 59.5
AL5G39210 Arabidopsis lyrata HOM05D004307 ORTHO05D005068 9.8e-72 273.9 243 57.2
CANSAT80G0325 Cannabis sativa HOM05D004307 ORTHO05D005068 2.8e-71 272.3 238 57.1
AUR62025994 Chenopodium quinoa HOM05D004307 ORTHO05D005068 4.9e-71 271.6 236 59.3
Carub.0005s2447 Capsella rubella HOM05D004307 ORTHO05D005068 1.1e-70 270.4 243 56.8
CsaV3_3G039220 Cucumis sativus L. HOM05D004307 ORTHO05D005068 1.1e-70 270.4 242 56.2
FvH4_6g23260 Fragaria vesca HOM05D004307 ORTHO05D005068 1.1e-70 270.4 239 60.7
HanXRQChr15g0491231 Helianthus annuus HOM05D004307 ORTHO05D005068 2.4e-70 269.2 237 58.6
Sed0010803 Sechium edule HOM05D004307 ORTHO05D005068 2.4e-70 269.2 239 56.9
MBI04_g28751_MAGBIO Magnolia biondii HOM05D004307 ORTHO05D005068 3.1e-70 268.9 234 60.7
AT3G57630 Arabidopsis thaliana HOM05D004307 ORTHO05D005068 4.1e-70 268.5 243 56.4
Sp5g04990 Schrenkiella parvula HOM05D004307 ORTHO05D005068 4.1e-70 268.5 243 56.0
FAN14G1649 Fragaria x ananassa HOM05D004307 ORTHO05D005068 7.0e-70 267.7 232 61.2
Lj5g0012411 Lotus japonicus HOM05D004307 ORTHO05D005068 9.2e-70 267.3 242 57.4
CARHR167930 Cardamine hirsuta HOM05D004307 ORTHO05D005068 1.6e-69 266.5 233 57.9
Ah.04g151900 Amaranthus hybridus HOM05D004307 ORTHO05D005068 2.0e-69 266.2 237 57.4
EL10Ac3g07020 Beta vulgaris HOM05D004307 ORTHO05D005068 3.5e-69 265.4 237 56.5
Sabra06G0038900 Salix brachista HOM05D004307 ORTHO05D005068 2.3e-68 262.7 272 53.3
PSO675G4641 Papaver somniferum HOM05D004307 ORTHO05D005068 2.9e-68 262.3 234 56.4
PSO541G4071 Papaver somniferum HOM05D004307 ORTHO05D005068 3.8e-68 261.9 234 56.4
Aa31LG10G12420 Aethionema arabicum HOM05D004307 ORTHO05D005068 1.9e-67 259.6 238 55.0
SalBow6G2199 Salvia bowleyana HOM05D004307 ORTHO05D005068 1.9e-67 259.6 237 54.9
ECA247G2115 Erigeron canadensis HOM05D003478 ORTHO05D005068 1.6e-66 256.5 238 56.7
Haze_19902 Corylus avellana HOM05D004307 ORTHO05D005068 4.4e-64 248.4 364 41.8
CDE05G2581 Ceratophyllum demersum HOM05D004307 ORTHO05D005068 2.9e-63 245.7 243 53.1
HPP92_020394 Vanilla planifolia HOM05D004307 ORTHO05D005068 3.2e-62 242.3 237 53.6
unitig_578.g15987 Utricularia gibba HOM05D004307 ORTHO05D005068 7.0e-62 241.1 262 49.2
Prupe.7G067200 Prunus persica HOM05D004307 ORTHO05D005068 3.5e-61 238.8 207 60.4
vmacro09093 Vaccinium macrocarpon HOM05D004307 ORTHO05D005068 5.9e-61 238.0 209 60.8
SEGI_15501 Sequoiadendron giganteum HOM05D004307 ORTHO05D005068 1.7e-60 236.5 236 51.7
Lj2C379G3 Lonicera japonica HOM05D004307 ORTHO05D005068 3.9e-60 235.3 208 60.6
Oeu033778.1 Olea europaea HOM05D004307 ORTHO05D005068 3.9e-60 235.3 210 59.5
Oeu008132.1 Olea europaea HOM05D004307 ORTHO05D005068 8.6e-60 234.2 208 60.1
VMungo0720G0406 Vigna mungo HOM05D004307 ORTHO05D005068 8.0e-58 227.6 208 57.2
Manes.09G028900 Manihot esculenta HOM05D004307 ORTHO05D005068 1.4e-57 226.9 201 58.2
ATR0605G138 Amborella trichopoda HOM05D004307 ORTHO05D005068 2.3e-57 226.1 236 50.4
ClCG10G017170 Citrullus lanatus HOM05D004307 ORTHO05D005068 6.8e-57 224.6 209 55.5
DCAR_013583 Daucus carota HOM05D004307 ORTHO05D005068 8.9e-57 224.2 214 56.5
Hund24740 Selenicereus undatus HOM05D004307 ORTHO05D005068 3.4e-56 222.2 206 57.8
AUR62024400 Chenopodium quinoa HOM05D004307 ORTHO05D005068 5.8e-56 221.5 207 57.5
Lsat_1_v5_gn_9_27501 Lactuca sativa HOM05D004307 ORTHO05D005068 3.7e-55 218.8 206 56.8
Zm00001eb402060 Zea mays HOM05D004307 ORTHO05D005068 4.9e-55 218.4 234 50.9
SGA_v2.0_scaffold105G30444 Striga asiatica HOM05D004307 ORTHO05D005068 5.4e-54 214.9 229 50.7
Lalb_Chr05g0213601 Lupinus albus HOM05D004307 ORTHO05D005068 8.1e-50 201.1 220 51.4
SalBow6G4126 Salvia bowleyana HOM05D004307 ORTHO05D005068 8.1e-50 201.1 199 50.8
Pp3c4_26380 Physcomitrium patens HOM05D004307 ORTHO05D005068 5.6e-43 178.3 226 42.5
AagrBONN_evm.TU.Sc2ySwM_344.2396 Anthoceros agrestis HOM05D004307 ORTHO05D005068 1.4e-41 173.7 237 42.6
CSS0038023 Camellia sinensis var. sinensis HOM05D004307 ORTHO05D005068 1.4e-38 163.7 146 62.3
Mapoly0126s0040 Marchantia polymorpha HOM05D004307 ORTHO05D005068 1.8e-33 146.7 219 38.4
SHI29213 Sapria himalayana HOM05D004307 ORTHO05D000001 1.0e-28 131.0 114 59.6
Glyma.03G139300 Glycine max HOM05D004307 ORTHO05D005068 1.5e-27 127.1 148 51.4
Os03g0174300 Oryza sativa ssp. japonica HOM05D004307 ORTHO05D005068 3.1e-25 119.4 143 49.0
TAR627G0211 Trochodendron aralioides HOM05D000885 ORTHO05D008875 6.4e-23 111.7 102 61.8
SMO153G0012 Selaginella moellendorffii HOM05D004307 ORTHO05D005068 1.1e-19 100.9 88 52.3
Ca_26767_v3 Cicer arietinum L. HOM05D004307 ORTHO05D005068 9.6e-19 97.8 63 76.2
Actinidia17248 Actinidia chinensis HOM05D000188 ORTHO05D007437 2.2e-07 60.1 35 77.1
Cfa016853 Carpinus fangiana HOM05D004307 ORTHO05D005068 4.9e-07 58.9 36 77.8


User provided reference genes

Program Settings