Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007990 Camellia sinensis var. sinensis HOM05D000615 ORTHO05D000447 9.4e-40 166.4 83 100.0
CSS0024865 Camellia sinensis var. sinensis HOM05D000615 ORTHO05D000447 2.2e-17 92.0 82 56.1
CSS0025978 Camellia sinensis var. sinensis HOM05D000615 ORTHO05D000447 3.6e-15 84.7 82 58.5
CSS0034200 Camellia sinensis var. sinensis HOM05D000615 ORTHO05D000447 3.6e-15 84.7 82 58.5
vmacro16162 Vaccinium macrocarpon HOM05D000615 ORTHO05D000447 1.7e-12 75.9 80 50.0
Dinv11040 Davidia involucrata HOM05D000615 ORTHO05D000447 1.1e-11 73.2 83 51.8
Rhsim10G0033800 Rhododendron simsii HOM05D000615 ORTHO05D000447 1.8e-11 72.4 80 46.2
Rhsim05G0212300 Rhododendron simsii HOM05D000615 ORTHO05D000447 5.4e-11 70.9 80 48.8
Potri.008G183200 Populus trichocarpa HOM05D000615 ORTHO05D000447 7.0e-11 70.5 82 43.9
Manes.12G020100 Manihot esculenta HOM05D000615 ORTHO05D000447 9.1e-11 70.1 80 46.2
Manes.15G153300 Manihot esculenta HOM05D000615 ORTHO05D000447 1.6e-10 69.3 83 48.2
Ciclev10030843m.g Citrus clementina HOM05D000615 ORTHO05D000447 2.7e-10 68.6 80 45.0
Rhsim10G0037900 Rhododendron simsii HOM05D000615 ORTHO05D000447 2.7e-10 68.6 80 45.0
Actinidia37453 Actinidia chinensis HOM05D000615 ORTHO05D000447 4.5e-10 67.8 84 44.0
Lj6C815T6 Lonicera japonica HOM05D000615 ORTHO05D000447 7.7e-10 67.0 80 47.5
Manes.13G020500 Manihot esculenta HOM05D000615 ORTHO05D000447 7.7e-10 67.0 83 45.8
Actinidia15117 Actinidia chinensis HOM05D000615 ORTHO05D000447 1.0e-09 66.6 81 44.4
Rhsim10G0038000 Rhododendron simsii HOM05D000615 ORTHO05D000447 1.0e-09 66.6 87 41.4
Hma1.2p1_0079F.1_g041185 Hydrangea macrophylla HOM05D000615 ORTHO05D000447 1.3e-09 66.2 84 46.4
Potri.010G050501 Populus trichocarpa HOM05D000615 ORTHO05D000447 1.7e-09 65.9 84 45.2
Potri.010G050300 Populus trichocarpa HOM05D000615 ORTHO05D000447 2.2e-09 65.5 84 45.2
Ah.02g130320 Amaranthus hybridus HOM05D000615 ORTHO05D000447 2.9e-09 65.1 80 41.2
EL10As2g23171 Beta vulgaris HOM05D000615 ORTHO05D000447 2.9e-09 65.1 80 45.0
Ciclev10019109m.g Citrus clementina HOM05D000615 ORTHO05D000447 6.5e-09 63.9 80 45.0
Aqoxy3G01292 Aquilegia oxysepala HOM05D000615 ORTHO05D000447 1.1e-08 63.2 81 45.7
PGR102G1000 Punica granatum HOM05D000615 ORTHO05D000447 1.5e-08 62.8 80 43.8
Sopen05g008800 Solanum pennellii HOM05D000615 ORTHO05D000447 1.5e-08 62.8 80 43.8
GSVIVG01000577001 Vitis vinifera HOM05D000615 ORTHO05D000447 1.5e-08 62.8 85 43.5
Solyc05g013850.2 Solanum lycopersicum HOM05D000615 ORTHO05D000447 1.9e-08 62.4 80 43.8
Sopen05g008770 Solanum pennellii HOM05D000615 ORTHO05D000447 1.9e-08 62.4 80 43.8
Cfa009250 Carpinus fangiana HOM05D000615 ORTHO05D000447 2.5e-08 62.0 80 42.5
Rhsim10G0033600 Rhododendron simsii HOM05D000615 ORTHO05D000447 2.5e-08 62.0 80 41.2
Atru.chr11.2179 Acer truncatum HOM05D000615 ORTHO05D000447 3.2e-08 61.6 80 42.5
Cc11_g16080 Coffea canephora HOM05D000615 ORTHO05D000447 3.2e-08 61.6 80 41.2
Haze_12346 Corylus avellana HOM05D000615 ORTHO05D000447 3.2e-08 61.6 79 41.8
Manes.17G109600 Manihot esculenta HOM05D000615 ORTHO05D000447 3.2e-08 61.6 83 44.6
AUR62005519 Chenopodium quinoa HOM05D000615 ORTHO05D000447 4.2e-08 61.2 80 43.8
AUR62024223 Chenopodium quinoa HOM05D000615 ORTHO05D000447 4.2e-08 61.2 80 41.2
Manes.17G109700 Manihot esculenta HOM05D000615 ORTHO05D000447 4.2e-08 61.2 83 44.6
vmacro19273 Vaccinium macrocarpon HOM05D000615 ORTHO05D000447 4.2e-08 61.2 80 45.0
GSVIVG01032348001 Vitis vinifera HOM05D000615 ORTHO05D000447 4.2e-08 61.2 82 45.1
GSVIVG01032353001 Vitis vinifera HOM05D000615 ORTHO05D000447 4.2e-08 61.2 82 45.1
GSVIVG01032357001 Vitis vinifera HOM05D000615 ORTHO05D000447 4.2e-08 61.2 82 45.1
GSVIVG01032359001 Vitis vinifera HOM05D000615 ORTHO05D000447 4.2e-08 61.2 82 45.1
GSVIVG01032360001 Vitis vinifera HOM05D000615 ORTHO05D000447 5.5e-08 60.8 81 46.9
Ciclev10019128m.g Citrus clementina HOM05D000615 ORTHO05D000447 7.2e-08 60.5 80 41.2
Sopen04g013790 Solanum pennellii HOM05D000615 ORTHO05D000447 7.2e-08 60.5 80 42.5
QL02p073720 Quercus lobata HOM05D000615 ORTHO05D000447 9.4e-08 60.1 80 46.2
Solyc04g026020.3 Solanum lycopersicum HOM05D000615 ORTHO05D000447 9.4e-08 60.1 80 42.5
PSO063G0386 Papaver somniferum HOM05D000615 ORTHO05D000447 1.2e-07 59.7 82 43.9
PSO067G0095 Papaver somniferum HOM05D000615 ORTHO05D000447 1.2e-07 59.7 82 43.9
PGSC0003DMG400016967 Solanum tuberosum HOM05D000615 ORTHO05D000447 1.2e-07 59.7 80 42.5
CiPaw.03G047200 Carya illinoinensis HOM05D000615 ORTHO05D000447 1.6e-07 59.3 77 48.1
Hma1.2p1_0279F.1_g111970 Hydrangea macrophylla HOM05D000615 ORTHO05D000447 1.6e-07 59.3 82 37.8
Sabra10G0019300 Salix brachista HOM05D000615 ORTHO05D000447 1.6e-07 59.3 84 41.7
Sabra16G0220500 Salix brachista HOM05D000615 ORTHO05D000447 1.6e-07 59.3 83 45.8
Potri.001G340400 Populus trichocarpa HOM05D000615 ORTHO05D000447 2.1e-07 58.9 83 44.6
Potri.001G340500 Populus trichocarpa HOM05D000615 ORTHO05D000447 2.1e-07 58.9 83 44.6
Potri.001G340600 Populus trichocarpa HOM05D000615 ORTHO05D000447 2.1e-07 58.9 83 44.6
Rhsim08G0180700 Rhododendron simsii HOM05D000615 ORTHO05D000447 2.1e-07 58.9 80 42.5
Aqoxy5G03658 Aquilegia oxysepala HOM05D000615 ORTHO05D000447 2.7e-07 58.5 80 45.0
Duzib068G0484 Durio zibethinus HOM05D000615 ORTHO05D000447 2.7e-07 58.5 80 43.8
Peaxi162Scf00128g00544 Petunia axillaris HOM05D000615 ORTHO05D000447 2.7e-07 58.5 85 42.4
Actinidia07904 Actinidia chinensis HOM05D000615 ORTHO05D000447 3.6e-07 58.2 81 40.7
Dinv33410 Davidia involucrata HOM05D000615 ORTHO05D000447 3.6e-07 58.2 82 39.0
TAR629G2170 Trochodendron aralioides HOM05D000615 ORTHO05D000447 3.6e-07 58.2 80 42.5
TAR629G3134 Trochodendron aralioides HOM05D000615 ORTHO05D000447 3.6e-07 58.2 80 42.5
GSVIVG01032352001 Vitis vinifera HOM05D000615 ORTHO05D000447 3.6e-07 58.2 82 42.7
COL.COLO4_29199 Corchorus olitorius HOM05D000615 ORTHO05D000447 4.7e-07 57.8 86 38.4
GSVIVG01007594001 Vitis vinifera HOM05D000615 ORTHO05D000447 4.7e-07 57.8 80 43.8
TAR622G1288 Trochodendron aralioides HOM05D000615 ORTHO05D000447 6.1e-07 57.4 80 45.0
Sabra16G0220400 Salix brachista HOM05D000615 ORTHO05D000447 8.0e-07 57.0 83 42.2
Thecc.03G118300 Theobroma cacao HOM05D000615 ORTHO05D000447 8.0e-07 57.0 80 40.0
Thecc.04G022200 Theobroma cacao HOM05D000615 ORTHO05D000447 8.0e-07 57.0 82 36.6
Aa31LG1G1660 Aethionema arabicum HOM05D000615 ORTHO05D000447 1.4e-06 56.2 80 37.5
CiPaw.03G047300 Carya illinoinensis HOM05D000615 ORTHO05D000447 1.4e-06 56.2 82 37.8
Dinv38501 Davidia involucrata HOM05D000615 ORTHO05D000447 1.4e-06 56.2 81 43.2
Sabra16G0221000 Salix brachista HOM05D000615 ORTHO05D000447 1.4e-06 56.2 83 44.6
vmacro18300 Vaccinium macrocarpon HOM05D000615 ORTHO05D000447 1.4e-06 56.2 82 39.0
CAN.G43.23 Capsicum annuum HOM05D000615 ORTHO05D000447 1.8e-06 55.8 80 38.8
TWI12G0679 Tripterygium wilfordii HOM05D000615 ORTHO05D000447 1.8e-06 55.8 85 40.0
COL.COLO4_19797 Corchorus olitorius HOM05D000615 ORTHO05D000447 2.3e-06 55.5 80 40.0
Dinv27420 Davidia involucrata HOM05D000615 ORTHO05D000447 2.3e-06 55.5 82 37.8
QL03p056352 Quercus lobata HOM05D000615 ORTHO05D000447 2.3e-06 55.5 84 41.7
CiPaw.04G031000 Carya illinoinensis HOM05D000615 ORTHO05D000447 3.0e-06 55.1 84 36.9
Potri.001G340200 Populus trichocarpa HOM05D000615 ORTHO05D000447 3.0e-06 55.1 83 43.4
Lj5A133T94 Lonicera japonica HOM05D000615 ORTHO05D000447 4.0e-06 54.7 80 45.0
Eucgr.I01713 Eucalyptus grandis HOM05D000615 ORTHO05D000447 5.2e-06 54.3 80 37.5
Gorai.003G107900 Gossypium raimondii HOM05D000615 ORTHO05D000447 5.2e-06 54.3 80 37.5
Cpa.g.sc130.60 Carica papaya HOM05D000615 ORTHO05D000447 6.8e-06 53.9 83 41.0
CSS0035093 Camellia sinensis var. sinensis HOM05D000615 ORTHO05D000447 8.8e-06 53.5 82 35.4
CiPaw.04G030800 Carya illinoinensis HOM05D000615 ORTHO05D000447 8.8e-06 53.5 84 35.7
CiPaw.04G030900 Carya illinoinensis HOM05D000615 ORTHO05D000447 8.8e-06 53.5 83 37.3
CDE08G0947 Ceratophyllum demersum HOM05D000615 ORTHO05D000447 8.8e-06 53.5 80 40.0
Dinv16547 Davidia involucrata HOM05D000615 ORTHO05D000447 8.8e-06 53.5 82 39.0
Dinv25714 Davidia involucrata HOM05D000615 ORTHO05D000447 8.8e-06 53.5 80 40.0
Eucgr.B03241 Eucalyptus grandis HOM05D000615 ORTHO05D000447 8.8e-06 53.5 80 43.8
Lj7A603T65 Lonicera japonica HOM05D000615 ORTHO05D000447 8.8e-06 53.5 80 38.8


User provided reference genes

Program Settings